UHGV-2010330

Genome information

Genome length 36,519 bps

CDS count 66

Completeness 99.90% (high-quality)

geNomad score 0.9470

Prediction confidence Confident

Genome information
Genome ID	UHGV-2010330
vOTU ID	vOTU-069103
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029071\|Ga0169228_10003\|provirus_131933_168451
BioSample	SAMEA2579962
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9470
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.66
Jumbo phage	No

Genome content
Genome length	36,519 bps
GC content	34.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	91.71%
Average CDS length	510.41 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2010330_3	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-2010330_3	UniRef90	UniRef90_UPI001D093EF2	ORF6C domain-containing protein	NA
UHGV-2010330_3	eggNOG-mapper	1232446.BAIE02000011_gene1630	ORF6C domain	NA
UHGV-2010330_3	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-2010330_3	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-2010330_3	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2010330_3	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-2010330_5	PHROG	phrog_585	NA	unknown function
UHGV-2010330_5	UniRef90	UniRef90_UPI000E471944	NA	NA
UHGV-2010330_5	eggNOG-mapper	1159488.SEQMU2_04590	NA	NA
UHGV-2010330_5	Pfam	PF10711	NA	DUF2513
UHGV-2010330_5	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-2010330_9	PHROG	phrog_7445	NA	unknown function
UHGV-2010330_9	UniRef90	UniRef90_UPI001C2C3882	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-2010330_9	eggNOG-mapper	1122989.KB898582_gene1853	PcfK-like protein	NA
UHGV-2010330_9	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-2010330_10	PHROG	phrog_8470	NA	unknown function
UHGV-2010330_10	UniRef90	UniRef90_UPI000E4E20B7	PcfJ domain-containing protein	NA
UHGV-2010330_10	eggNOG-mapper	1232446.BAIE02000011_gene1624	PcfJ-like protein	NA
UHGV-2010330_10	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2010330_10	Structural annotation	PF14284, NF008072	NA	NA
UHGV-2010330_14	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2010330_14	PHROG	phrog_216	integrase	integration and excision
UHGV-2010330_14	UniRef90	UniRef90_G9R0Z2	Tyr recombinase domain-containing protein	NA
UHGV-2010330_14	eggNOG-mapper	1232446.BAIE02000002_gene805	Integrase	NA
UHGV-2010330_14	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2010330_14	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2010330_14	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-2010330_16	PHROG	phrog_5051	NA	unknown function
UHGV-2010330_19	eggNOG-mapper	1232446.BAIE02000002_gene811	NA	NA
UHGV-2010330_21	UniRef90	UniRef90_A0A7U9CJ41	Phosphagen kinase N-terminal domain-containing protein	NA
UHGV-2010330_23	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-2010330_23	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-2010330_23	eggNOG-mapper	1232446.BAIE02000002_gene815	NA	NA
UHGV-2010330_23	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-2010330_24	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2010330_24	UniRef90	UniRef90_UPI000497F8A6	helix-turn-helix domain-containing protein	NA
UHGV-2010330_24	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-2010330_24	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2010330_24	Structural annotation	PF01978, MF_01909, TIGR04176, COG3355	NA	NA
UHGV-2010330_25	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2010330_25	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2010330_25	UniRef90	UniRef90_G9R103	SF4 helicase domain-containing protein	NA
UHGV-2010330_25	eggNOG-mapper	1232446.BAIE02000002_gene817	Participates in initiation and elongation during chromosome replication	NA
UHGV-2010330_25	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2010330_25	COG	COG0305	Replicative DNA helicase	NA
UHGV-2010330_25	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2010330_27	Structural annotation	PF04545, PF01920, TIGR01636	NA	NA
UHGV-2010330_28	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2010330_28	UniRef90	UniRef90_A0A3E3ADS4	HNH endonuclease	NA
UHGV-2010330_28	eggNOG-mapper	1232446.BAIE02000002_gene820	HNH nucleases	NA
UHGV-2010330_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2010330_30	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-2010330_30	UniRef90	UniRef90_A0A3E3ADK1	Terminase	NA
UHGV-2010330_30	eggNOG-mapper	1232446.BAIE02000002_gene822	Phage terminase, small subunit	NA
UHGV-2010330_30	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2010330_30	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2010330_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2010330_31	UniRef90	UniRef90_A0A3E3ADF9	Terminase large subunit	NA
UHGV-2010330_31	eggNOG-mapper	1232446.BAIE02000002_gene823	Phage Terminase	NA
UHGV-2010330_31	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2010330_31	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2010330_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2010330_31	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-2010330_32	PHROG	phrog_12	portal protein	head and packaging
UHGV-2010330_32	UniRef90	UniRef90_A0A3E3AEZ3	Phage portal protein	NA
UHGV-2010330_32	eggNOG-mapper	1232446.BAIE02000002_gene824	Phage portal protein, HK97 family	NA
UHGV-2010330_32	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2010330_32	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2010330_32	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2010330_32	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-2010330_33	KOfam	K06904	NA	NA
UHGV-2010330_33	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2010330_33	UniRef90	UniRef90_A0A3E3AEE5	HK97 family phage prohead protease	NA
UHGV-2010330_33	eggNOG-mapper	1232446.BAIE02000002_gene825	Phage prohead protease, HK97 family	NA
UHGV-2010330_33	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2010330_33	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2010330_33	COG	COG3740	Phage head maturation protease	NA
UHGV-2010330_33	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2010330_34	PHROG	phrog_10	major head protein	head and packaging
UHGV-2010330_34	UniRef90	UniRef90_A0A3E3ACQ3	Phage major capsid protein	NA
UHGV-2010330_34	eggNOG-mapper	1232446.BAIE02000002_gene826	phage major capsid protein, HK97 family	NA
UHGV-2010330_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2010330_34	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2010330_34	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2010330_34	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2010330_35	PHROG	phrog_2550	NA	unknown function
UHGV-2010330_35	UniRef90	UniRef90_R5V091	Phage related protein	NA
UHGV-2010330_35	eggNOG-mapper	1232446.BAIE02000002_gene827	NA	NA
UHGV-2010330_35	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2010330_35	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2010330_36	PHROG	phrog_19734	NA	unknown function
UHGV-2010330_36	UniRef90	UniRef90_A0A3E3ACV2	Head-tail adaptor protein	NA
UHGV-2010330_36	eggNOG-mapper	1232446.BAIE02000002_gene828	NA	NA
UHGV-2010330_36	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2010330_37	PHROG	phrog_78	tail terminator	connector
UHGV-2010330_37	eggNOG-mapper	1232446.BAIE02000002_gene829	NA	NA
UHGV-2010330_37	Structural annotation	PF05657	NA	NA
UHGV-2010330_38	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-2010330_38	eggNOG-mapper	1232446.BAIE02000002_gene830	NA	NA
UHGV-2010330_38	Structural annotation	TIGR01725	NA	NA
UHGV-2010330_39	PHROG	phrog_88	major tail protein	tail
UHGV-2010330_39	UniRef90	UniRef90_A0A3E3ACS6	Phage tail protein	NA
UHGV-2010330_39	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-2010330_39	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2010330_39	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2010330_40	eggNOG-mapper	1235798.C817_04591	NA	NA
UHGV-2010330_42	PHROG	phrog_23464	NA	unknown function
UHGV-2010330_42	eggNOG-mapper	1232446.BAIE02000002_gene834	tape measure	NA
UHGV-2010330_42	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2010330_42	Structural annotation	PF20155	NA	NA
UHGV-2010330_43	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2010330_43	UniRef90	UniRef90_A0A3E3AF06	Phage tail protein	NA
UHGV-2010330_43	eggNOG-mapper	1232446.BAIE02000002_gene835	phage tail	NA
UHGV-2010330_43	COG	COG4722	Phage-related protein YomH	NA
UHGV-2010330_43	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2010330_44	PHROG	phrog_13289	tail protein	tail
UHGV-2010330_44	UniRef90	UniRef90_A0A3E3AEF9	Peptidase S74 domain-containing protein	NA
UHGV-2010330_44	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-2010330_44	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2010330_44	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2010330_44	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2010330_44	COG	COG4926	Phage-related protein	NA
UHGV-2010330_44	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2010330_45	eggNOG-mapper	999413.HMPREF1094_01998	NA	NA
UHGV-2010330_46	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-2010330_46	PHROG	phrog_11157	NA	unknown function
UHGV-2010330_46	UniRef90	UniRef90_G9R125	Big_13 domain-containing protein	NA
UHGV-2010330_46	eggNOG-mapper	1232446.BAIE02000011_gene1582	NA	NA
UHGV-2010330_46	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-2010330_46	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-2010330_46	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-2010330_47	PHROG	phrog_32322	NA	unknown function
UHGV-2010330_47	UniRef90	UniRef90_G9R126	Ig-like_bact domain-containing protein	NA
UHGV-2010330_47	eggNOG-mapper	1232446.BAIE02000011_gene1581	NA	NA
UHGV-2010330_47	Pfam	PF13754	NA	Big_3_4
UHGV-2010330_47	Structural annotation	PF13754	NA	NA
UHGV-2010330_48	eggNOG-mapper	411461.DORFOR_01184	NA	NA
UHGV-2010330_48	Structural annotation	PF07703, TIGR02657, COG2372	NA	NA
UHGV-2010330_51	PHROG	phrog_24267	NA	unknown function
UHGV-2010330_51	UniRef90	UniRef90_A0A173T301	Phage-related holin (Lysis protein)	NA
UHGV-2010330_51	eggNOG-mapper	658655.HMPREF0988_00525	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-2010330_51	COG	COG4675	Phage tail collar domain	NA
UHGV-2010330_51	Structural annotation	COG4675	NA	NA
UHGV-2010330_56	eggNOG-mapper	1230342.CTM_17037	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-2010330_57	PHROG	phrog_1129	holin	lysis
UHGV-2010330_57	UniRef90	UniRef90_A0A0J8Z1S7	Holin protein	NA
UHGV-2010330_57	eggNOG-mapper	1123075.AUDP01000020_gene1532	Phage holin family Hol44, in holin superfamily V	NA
UHGV-2010330_57	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2010330_57	Structural annotation	PF06946	NA	NA
UHGV-2010330_58	PHROG	phrog_4105	NA	unknown function
UHGV-2010330_58	eggNOG-mapper	1121105.ATXL01000027_gene760	NA	NA
UHGV-2010330_59	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2010330_59	PHROG	phrog_1794	amidase	lysis
UHGV-2010330_59	UniRef90	UniRef90_A0A3E3E9Q5	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-2010330_59	eggNOG-mapper	1286171.EAL2_c06030	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-2010330_59	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2010330_59	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-2010330_59	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-2010330_59	Structural annotation	PF01510, PF18342, MF_04111, NF008758, NF040670, COG5632	NA	NA
UHGV-2010330_61	KOfam	K14059	int; integrase	NA
UHGV-2010330_61	PHROG	phrog_1	integrase	integration and excision
UHGV-2010330_61	UniRef90	UniRef90_UPI000E4D01BB	site-specific integrase	NA
UHGV-2010330_61	eggNOG-mapper	1232446.BAIE02000002_gene793	Phage integrase family	NA
UHGV-2010330_61	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2010330_61	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2010330_61	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4974	NA	NA
UHGV-2010330_64	UniRef90	UniRef90_UPI00067F15F5	helix-turn-helix domain-containing protein	NA
UHGV-2010330_64	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA