UHGV-2010714

Genome information

Genome length 40,710 bps

CDS count 61

Completeness 99.90% (high-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-2010714
vOTU ID	vOTU-007691
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300023502\|Ga0257054_100505\|provirus_2_40711
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.97
Jumbo phage	No

Genome content
Genome length	40,710 bps
GC content	55.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	91.06%
Average CDS length	611.56 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2010714_1	eggNOG-mapper	1519439.JPJG01000033_gene1666	NA	NA
UHGV-2010714_1	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-2010714_2	eggNOG-mapper	1519439.JPJG01000033_gene1667	NA	NA
UHGV-2010714_3	eggNOG-mapper	1519439.JPJG01000033_gene1668	NA	NA
UHGV-2010714_4	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-2010714_4	PHROG	phrog_894	endolysin	lysis
UHGV-2010714_4	UniRef90	UniRef90_UPI00164EB83A	D-Ala-D-Ala carboxypeptidase family metallohydrolase	NA
UHGV-2010714_4	eggNOG-mapper	657322.FPR_27200	Peptidase M15A	NA
UHGV-2010714_4	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-2010714_4	COG	COG3108	NA	NA
UHGV-2010714_4	Structural annotation	PF05951, COG3108	NA	NA
UHGV-2010714_5	PHROG	phrog_18955	NA	unknown function
UHGV-2010714_5	UniRef90	UniRef90_UPI00164D2830	phosphodiester glycosidase family protein	NA
UHGV-2010714_5	eggNOG-mapper	1007096.BAGW01000013_gene2392	Phage lysozyme	NA
UHGV-2010714_5	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-2010714_5	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-2010714_5	Structural annotation	PF09992, COG4632	NA	NA
UHGV-2010714_7	PHROG	phrog_199	holin	lysis
UHGV-2010714_7	UniRef90	UniRef90_UPI00164E96DB	phage holin family protein	NA
UHGV-2010714_7	eggNOG-mapper	693746.OBV_20230	Bacteriophage holin family	NA
UHGV-2010714_7	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2010714_7	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2010714_7	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2010714_9	PHROG	phrog_18725	NA	unknown function
UHGV-2010714_9	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-2010714_10	PHROG	phrog_13879	NA	unknown function
UHGV-2010714_10	eggNOG-mapper	693746.OBV_18210	NA	NA
UHGV-2010714_10	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-2010714_11	PHROG	phrog_1194	NA	unknown function
UHGV-2010714_11	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-2010714_11	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2010714_12	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2010714_12	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-2010714_12	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-2010714_12	COG	COG1511	NA	NA
UHGV-2010714_12	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-2010714_13	PHROG	phrog_706	NA	unknown function
UHGV-2010714_13	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-2010714_13	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-2010714_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2010714_13	Structural annotation	PF06854	NA	NA
UHGV-2010714_14	PHROG	phrog_11299	NA	unknown function
UHGV-2010714_14	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-2010714_14	Structural annotation	PF10666	NA	NA
UHGV-2010714_15	PHROG	phrog_3099	NA	unknown function
UHGV-2010714_15	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-2010714_15	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-2010714_16	PHROG	phrog_3266	tail completion	connector
UHGV-2010714_16	eggNOG-mapper	693746.OBV_18140	NA	NA
UHGV-2010714_16	Structural annotation	PF08873	NA	NA
UHGV-2010714_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2010714_17	UniRef90	UniRef90_UPI00164EC49A	minor capsid protein	NA
UHGV-2010714_17	eggNOG-mapper	33035.JPJF01000106_gene3128	NA	NA
UHGV-2010714_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2010714_17	Structural annotation	PF11114	NA	NA
UHGV-2010714_18	Structural annotation	PF20536, MF_01370, TIGR02126	NA	NA
UHGV-2010714_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2010714_19	eggNOG-mapper	693746.OBV_18110	NA	NA
UHGV-2010714_20	UniRef90	UniRef90_UPI00164D7D74	C2H2-type zinc finger protein	NA
UHGV-2010714_20	Pfam	PF00096	Zinc finger, C2H2 type	zf-C2H2
UHGV-2010714_20	Structural annotation	PF05605	NA	NA
UHGV-2010714_21	PHROG	phrog_422	major head protein	head and packaging
UHGV-2010714_21	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-2010714_21	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-2010714_21	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2010714_22	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2010714_22	UniRef90	UniRef90_UPI00164D9F94	phage scaffolding protein	NA
UHGV-2010714_22	eggNOG-mapper	693746.OBV_18080	COG NOG36366 non supervised orthologous group	NA
UHGV-2010714_22	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2010714_22	Structural annotation	PF06810	NA	NA
UHGV-2010714_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2010714_23	UniRef90	UniRef90_UPI0006814CA4	phage minor capsid protein	NA
UHGV-2010714_23	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-2010714_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2010714_23	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-2010714_23	COG	COG2369	NA	NA
UHGV-2010714_23	Structural annotation	PF06152	NA	NA
UHGV-2010714_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-2010714_24	UniRef90	UniRef90_UPI000680A1DB	phage portal protein	NA
UHGV-2010714_24	eggNOG-mapper	693746.OBV_18040	NA	NA
UHGV-2010714_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2010714_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2010714_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2010714_26	UniRef90	UniRef90_UPI00164D9352	PBSX family phage terminase large subunit	NA
UHGV-2010714_26	eggNOG-mapper	665956.HMPREF1032_02957	Phage terminase, large subunit, PBSX family	NA
UHGV-2010714_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2010714_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2010714_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2010714_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-2010714_26	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2010714_27	PHROG	phrog_2412	NA	unknown function
UHGV-2010714_27	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-2010714_28	UniRef90	UniRef90_A0A4R2LRL5	Putative DNA-binding protein YlxM (UPF0122 family)	NA
UHGV-2010714_28	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-2010714_28	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-2010714_28	Structural annotation	PF08281, MF_00245, TIGR03001, NF001073, COG2739	NA	NA
UHGV-2010714_30	UniRef90	UniRef90_UPI001C00E0A9	helix-turn-helix domain-containing protein	NA
UHGV-2010714_30	eggNOG-mapper	1235797.C816_02163	Helix-turn-helix domain	NA
UHGV-2010714_30	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2010714_30	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-2010714_32	PHROG	phrog_38832	NA	unknown function
UHGV-2010714_32	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-2010714_33	PHROG	phrog_23490	NA	unknown function
UHGV-2010714_33	UniRef90	UniRef90_R6RLI7	YoqE	NA
UHGV-2010714_33	eggNOG-mapper	1122918.KB907248_gene4513	NA	NA
UHGV-2010714_35	PHROG	phrog_474	phosphofructokinase	other
UHGV-2010714_35	UniRef90	UniRef90_A0A2V2EHL9	NA	NA
UHGV-2010714_35	eggNOG-mapper	1203606.HMPREF1526_00237	NA	NA
UHGV-2010714_35	Pfam	PF19905	NA	DUF6378
UHGV-2010714_35	Structural annotation	PF19905	NA	NA
UHGV-2010714_38	PHROG	phrog_3777	NA	unknown function
UHGV-2010714_38	UniRef90	UniRef90_UPI0019572B07	NA	NA
UHGV-2010714_38	eggNOG-mapper	767817.Desgi_3545	NA	NA
UHGV-2010714_38	Pfam	PF12957	NA	DUF3846
UHGV-2010714_38	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-2010714_39	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2010714_39	eggNOG-mapper	1226322.HMPREF1545_00290	sulfate reduction	NA
UHGV-2010714_39	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2010714_39	Structural annotation	PF01507, MF_01161, NF006327, COG0175	NA	NA
UHGV-2010714_42	UniRef90	UniRef90_A0A1C6D177	Myb-like DNA-binding domain	NA
UHGV-2010714_42	eggNOG-mapper	445972.ANACOL_00160	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-2010714_43	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2010714_43	UniRef90	UniRef90_UPI00042422E9	SANT/Myb-like DNA-binding domain-containing protein	NA
UHGV-2010714_43	eggNOG-mapper	445972.ANACOL_00160	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-2010714_45	PHROG	phrog_824	NA	unknown function
UHGV-2010714_45	UniRef90	UniRef90_UPI00164D35CF	VRR-NUC domain-containing protein	NA
UHGV-2010714_45	eggNOG-mapper	742738.HMPREF9460_02501	VRR_NUC	NA
UHGV-2010714_45	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2010714_45	Structural annotation	PF08774	NA	NA
UHGV-2010714_46	UniRef90	UniRef90_UPI0011773349	resolvase	NA
UHGV-2010714_47	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-2010714_47	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2010714_47	UniRef90	UniRef90_UPI00164D082B	DEAD/DEAH box helicase	NA
UHGV-2010714_47	eggNOG-mapper	742738.HMPREF9460_02499	helicase superfamily c-terminal domain	NA
UHGV-2010714_47	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2010714_47	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2010714_47	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2010714_47	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2010714_47	Structural annotation	PF04851, PF16203, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-2010714_48	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-2010714_48	UniRef90	UniRef90_UPI00164DBC57	NA	NA
UHGV-2010714_48	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-2010714_48	Pfam	PF06048	NA	DUF927
UHGV-2010714_48	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-2010714_48	COG	COG5519	NA	NA
UHGV-2010714_48	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-2010714_49	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-2010714_49	PHROG	phrog_11992	NA	unknown function
UHGV-2010714_49	UniRef90	UniRef90_UPI00164D8540	CHC2 zinc finger domain-containing protein	NA
UHGV-2010714_49	eggNOG-mapper	742738.HMPREF9460_02494	CHC2 zinc finger	NA
UHGV-2010714_49	PADLOC	drt-cluster192	DRT	DRT
UHGV-2010714_49	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-2010714_49	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-2010714_49	Structural annotation	PF01807	NA	NA
UHGV-2010714_50	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2010714_50	UniRef90	UniRef90_UPI00164E5A62	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-2010714_50	eggNOG-mapper	1007096.BAGW01000023_gene152	NA	NA
UHGV-2010714_50	Pfam	PF12684	NA	DUF3799
UHGV-2010714_50	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-2010714_50	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-2010714_51	PHROG	phrog_21613	NA	unknown function
UHGV-2010714_51	eggNOG-mapper	1007096.BAGW01000023_gene153	NA	NA
UHGV-2010714_53	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-2010714_53	PHROG	phrog_1499	NA	unknown function
UHGV-2010714_53	UniRef90	UniRef90_UPI00164CEF4D	AAA family ATPase	NA
UHGV-2010714_53	eggNOG-mapper	1007096.BAGW01000023_gene155	DNA recombination	NA
UHGV-2010714_53	Pfam	PF13476	AAA domain	AAA_23
UHGV-2010714_53	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-2010714_53	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-2010714_54	PHROG	phrog_1029	NA	unknown function
UHGV-2010714_54	eggNOG-mapper	1203606.HMPREF1526_01890	NA	NA
UHGV-2010714_54	Structural annotation	PF10065, COG5532	NA	NA
UHGV-2010714_55	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-2010714_55	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-2010714_55	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-2010714_56	PHROG	phrog_22529	NA	unknown function
UHGV-2010714_56	UniRef90	UniRef90_UPI00164E6E61	3D domain-containing protein	NA
UHGV-2010714_56	eggNOG-mapper	1007096.BAGW01000031_gene115	3D domain	NA
UHGV-2010714_56	Pfam	PF06725	3D domain	3D
UHGV-2010714_56	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-2010714_58	UniRef90	UniRef90_UPI00164D0CB8	helix-turn-helix domain-containing protein	NA
UHGV-2010714_58	eggNOG-mapper	1540257.JQMW01000013_gene774	NA	NA
UHGV-2010714_58	Pfam	PF05339	NA	DUF739
UHGV-2010714_59	UniRef90	UniRef90_UPI001A9B62BF	helix-turn-helix domain-containing protein	NA
UHGV-2010714_59	eggNOG-mapper	469609.HMPREF0847_02166	NA	NA
UHGV-2010714_59	Pfam	PF20432	Antitoxin Xre-like helix-turn-helix domain	Xre-like-HTH
UHGV-2010714_59	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-2010714_60	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2010714_60	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2010714_60	UniRef90	UniRef90_UPI00164EA9BB	helix-turn-helix domain-containing protein	NA
UHGV-2010714_60	eggNOG-mapper	1140001.I571_01121	Peptidase S24-like	NA
UHGV-2010714_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2010714_60	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2010714_60	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2010714_61	KOfam	K14059	int; integrase	NA
UHGV-2010714_61	PHROG	phrog_1	integrase	integration and excision
UHGV-2010714_61	UniRef90	UniRef90_UPI0019572115	tyrosine-type recombinase/integrase	NA
UHGV-2010714_61	eggNOG-mapper	1007096.BAGW01000023_gene159	Phage integrase family	NA
UHGV-2010714_61	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2010714_61	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2010714_61	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA