UHGV-2010847

Genome information

Genome length 35,527 bps

CDS count 40

Completeness 94.77% (high-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-2010847
vOTU ID	vOTU-007501
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029039\|Ga0169649_100298\|provirus_8588_44114
BioSample	SAMEA2580068
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.77% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.41
Jumbo phage	No

Genome content
Genome length	35,527 bps
GC content	40.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	93.06%
Average CDS length	830.18 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2010847_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2010847_1	PHROG	phrog_670	endolysin	lysis
UHGV-2010847_1	UniRef90	UniRef90_A0A352SK06	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-2010847_1	eggNOG-mapper	411490.ANACAC_00703	Ami_2	NA
UHGV-2010847_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2010847_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-2010847_1	Structural annotation	PF01510, PF08239, MF_04111, NF008758, COG5632	NA	NA
UHGV-2010847_2	PHROG	phrog_1048	NA	unknown function
UHGV-2010847_2	UniRef90	UniRef90_A0A352P8A0	NA	NA
UHGV-2010847_2	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-2010847_2	Pfam	PF11195	NA	DUF2829
UHGV-2010847_2	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-2010847_2	Structural annotation	PF11195	NA	NA
UHGV-2010847_3	PHROG	phrog_199	holin	lysis
UHGV-2010847_3	UniRef90	UniRef90_R7CBJ9	Toxin secretion/phage lysis holin	NA
UHGV-2010847_3	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-2010847_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2010847_3	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2010847_3	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2010847_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2010847_4	PHROG	phrog_22978	NA	unknown function
UHGV-2010847_4	UniRef90	UniRef90_A0A352SFR2	MuF_C domain-containing protein (Fragment)	NA
UHGV-2010847_4	eggNOG-mapper	748224.HMPREF9436_01406	NA	NA
UHGV-2010847_5	PHROG	phrog_22978	NA	unknown function
UHGV-2010847_5	eggNOG-mapper	1235794.C811_00559	NA	NA
UHGV-2010847_5	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-2010847_5	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-2010847_6	eggNOG-mapper	1226322.HMPREF1545_00786	NA	NA
UHGV-2010847_8	KOfam	K10062	COLEC12; collectin sub-family member 12	NA
UHGV-2010847_8	PHROG	phrog_5073	tail fiber protein	tail
UHGV-2010847_8	UniRef90	UniRef90_UPI001A9A7986	collagen-like protein	NA
UHGV-2010847_8	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2010847_9	KOfam	K13884	MARCO; macrophage receptor with collagenous structure	NA
UHGV-2010847_9	PHROG	phrog_819	tail protein	tail
UHGV-2010847_9	UniRef90	UniRef90_A0A416C6Q4	Collagen-like protein	NA
UHGV-2010847_9	eggNOG-mapper	908340.HMPREF9406_2567	NA	NA
UHGV-2010847_9	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2010847_10	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-2010847_10	eggNOG-mapper	718252.FP2_29250	NA	NA
UHGV-2010847_10	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-2010847_11	PHROG	phrog_12105	NA	unknown function
UHGV-2010847_12	PHROG	phrog_15239	NA	unknown function
UHGV-2010847_12	eggNOG-mapper	1507.HMPREF0262_03462	NA	NA
UHGV-2010847_13	PHROG	phrog_1357	major head protein	head and packaging
UHGV-2010847_13	UniRef90	UniRef90_A0A173SHX1	Major capsid protein, N4-gp56 family	NA
UHGV-2010847_13	eggNOG-mapper	748224.HMPREF9436_02545	NA	NA
UHGV-2010847_13	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-2010847_13	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2010847_14	PHROG	phrog_13908	NA	unknown function
UHGV-2010847_14	UniRef90	UniRef90_UPI0012DFC3C8	ribosomal-processing cysteine protease Prp	NA
UHGV-2010847_14	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-2010847_15	KOfam	K07584	NA	NA
UHGV-2010847_15	PHROG	phrog_4478	peptidase	other
UHGV-2010847_15	UniRef90	UniRef90_A0A3R6MZF6	Ribosomal-processing cysteine protease Prp	NA
UHGV-2010847_15	eggNOG-mapper	484019.THA_1315	Cysteine protease Prp	NA
UHGV-2010847_15	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-2010847_15	COG	COG2868	NA	NA
UHGV-2010847_15	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-2010847_16	PHROG	phrog_156	portal protein	head and packaging
UHGV-2010847_16	UniRef90	UniRef90_A0A8D9UH10	Portal protein	NA
UHGV-2010847_16	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-2010847_16	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-2010847_17	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2010847_17	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-2010847_17	UniRef90	UniRef90_UPI001EE1BE37	phage terminase large subunit	NA
UHGV-2010847_17	eggNOG-mapper	411483.FAEPRAA2165_01044	Terminase-like family	NA
UHGV-2010847_17	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2010847_17	COG	COG1783	Phage terminase large subunit	NA
UHGV-2010847_17	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2010847_18	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-2010847_18	UniRef90	UniRef90_A0A0A7RTX1	Terminase small subunit	NA
UHGV-2010847_18	eggNOG-mapper	1567014.A0A0A7RTX1_9VIRU	NA	NA
UHGV-2010847_18	Structural annotation	PF07141	NA	NA
UHGV-2010847_19	PHROG	phrog_19695	NA	unknown function
UHGV-2010847_19	eggNOG-mapper	411462.DORLON_00772	NA	NA
UHGV-2010847_21	eggNOG-mapper	1235800.C819_02253	NA	NA
UHGV-2010847_22	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-2010847_22	PHROG	phrog_28876	metal-dependent phosphohydrolase	other
UHGV-2010847_22	UniRef90	UniRef90_A0A373LVX6	HD domain-containing protein	NA
UHGV-2010847_22	eggNOG-mapper	97139.C824_00737	PFAM HD domain	NA
UHGV-2010847_22	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-2010847_22	Structural annotation	PF07514, MF_01427, NF010007, COG3481	NA	NA
UHGV-2010847_23	UniRef90	UniRef90_UPI0011072322	NA	NA
UHGV-2010847_23	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-2010847_24	PHROG	phrog_874	NA	unknown function
UHGV-2010847_24	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-2010847_24	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-2010847_26	eggNOG-mapper	476272.RUMHYD_03338	NA	NA
UHGV-2010847_27	PHROG	phrog_31107	NA	unknown function
UHGV-2010847_31	PHROG	phrog_959	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2010847_31	UniRef90	UniRef90_R7CC66	NUMOD4 domain-containing protein	NA
UHGV-2010847_31	eggNOG-mapper	1410650.JHWL01000037_gene604	NA	NA
UHGV-2010847_31	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-2010847_31	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-2010847_31	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-2010847_32	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2010847_32	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2010847_32	UniRef90	UniRef90_R7CB61	Chromosome partitioning protein ParB family	NA
UHGV-2010847_32	eggNOG-mapper	411461.DORFOR_01144	Belongs to the ParB family	NA
UHGV-2010847_32	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2010847_32	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-2010847_32	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2010847_32	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-2010847_34	PHROG	phrog_7566	NA	unknown function
UHGV-2010847_34	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-2010847_34	eggNOG-mapper	411902.CLOBOL_05695	NA	NA
UHGV-2010847_35	COG	COG0328	Ribonuclease HI	NA
UHGV-2010847_35	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2010847_36	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2010847_36	UniRef90	UniRef90_A0A1I5LZL1	Relaxase/Mobilisation nuclease domain-containing protein	NA
UHGV-2010847_36	eggNOG-mapper	1196322.A370_05744	NA	NA
UHGV-2010847_36	Structural annotation	PF21578, NF041486	NA	NA
UHGV-2010847_39	UniRef90	UniRef90_A0A352SIQ1	HTH cro/C1-type domain-containing protein	NA
UHGV-2010847_39	eggNOG-mapper	1292035.H476_1036	NA	NA
UHGV-2010847_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2010847_39	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-2010847_40	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2010847_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2010847_40	UniRef90	UniRef90_UPI0015701830	helix-turn-helix domain-containing protein	NA
UHGV-2010847_40	eggNOG-mapper	632245.CLP_2722	Helix-turn-helix XRE-family like proteins	NA
UHGV-2010847_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2010847_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA