UHGV-2010877

Genome information

Genome length 37,984 bps

CDS count 63

Completeness 83.85% (medium-quality)

geNomad score 0.9631

Prediction confidence Confident

Genome information
Genome ID	UHGV-2010877
vOTU ID	vOTU-016952
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029048\|Ga0169691_100162\|provirus_134_38117
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.85% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9631
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	80.3
Jumbo phage	No

Genome content
Genome length	37,984 bps
GC content	50.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	91.62%
Average CDS length	555.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2010877_2	KOfam	K14059	int; integrase	NA
UHGV-2010877_2	PHROG	phrog_1	integrase	integration and excision
UHGV-2010877_2	UniRef90	UniRef90_G4Q8Q7	Site-specific recombinase	NA
UHGV-2010877_2	eggNOG-mapper	568816.Acin_1265	Belongs to the 'phage' integrase family	NA
UHGV-2010877_2	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-2010877_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2010877_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2010877_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2010877_3	PHROG	phrog_806	NA	unknown function
UHGV-2010877_3	UniRef90	UniRef90_A0A1B3WEZ6	NA	NA
UHGV-2010877_3	eggNOG-mapper	446470.Snas_1319	NA	NA
UHGV-2010877_3	Pfam	PF11611	NA	DUF4352
UHGV-2010877_3	COG	COG0515	Serine/threonine protein kinase	NA
UHGV-2010877_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2010877_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2010877_4	UniRef90	UniRef90_UPI001D0986B9	XRE family transcriptional regulator	NA
UHGV-2010877_4	eggNOG-mapper	1273103.NM10_06896	Peptidase S24-like	NA
UHGV-2010877_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2010877_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2010877_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2010877_4	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-2010877_5	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2010877_5	UniRef90	UniRef90_A0A4R1Q4B9	DNA-binding XRE family transcriptional regulator	NA
UHGV-2010877_5	eggNOG-mapper	1009370.ALO_12841	NA	NA
UHGV-2010877_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2010877_5	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2010877_7	PHROG	phrog_7735	excisionase	integration and excision
UHGV-2010877_7	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2010877_8	UniRef90	UniRef90_UPI0009F4DDBD	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-2010877_8	eggNOG-mapper	568816.Acin_1254	LysM domain	NA
UHGV-2010877_8	COG	COG1388	LysM repeat	NA
UHGV-2010877_8	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-2010877_10	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2010877_10	UniRef90	UniRef90_UPI001472A545	siphovirus Gp157 family protein	NA
UHGV-2010877_10	eggNOG-mapper	699218.HMPREF0889_0310	Siphovirus Gp157	NA
UHGV-2010877_10	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-2010877_10	Structural annotation	PF05565	NA	NA
UHGV-2010877_11	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2010877_11	UniRef90	UniRef90_UPI000D0EBA7D	ERF family protein	NA
UHGV-2010877_11	eggNOG-mapper	1145276.T479_16370	ERF superfamily	NA
UHGV-2010877_11	Pfam	PF04404	ERF superfamily	ERF
UHGV-2010877_11	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-2010877_12	PHROG	phrog_9403	NA	unknown function
UHGV-2010877_13	KOfam	K11144	dnaI; primosomal protein DnaI	NA
UHGV-2010877_13	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2010877_13	UniRef90	UniRef90_UPI001D085F29	ATP-binding protein	NA
UHGV-2010877_13	eggNOG-mapper	591001.Acfer_1217	IstB-like ATP binding protein	NA
UHGV-2010877_13	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-2010877_13	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2010877_13	Structural annotation	PF01695, MF_01158, NF006505, COG1484	NA	NA
UHGV-2010877_16	Structural annotation	PF11998, COG5420	NA	NA
UHGV-2010877_20	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-2010877_20	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-2010877_20	UniRef90	UniRef90_UPI0018C54F0E	FAD-dependent thymidylate synthase	NA
UHGV-2010877_20	eggNOG-mapper	883156.HMPREF9282_00531	thymidylate synthase (FAD) activity	NA
UHGV-2010877_20	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-2010877_20	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-2010877_20	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-2010877_20	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-2010877_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2010877_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2010877_21	UniRef90	UniRef90_UPI00094EA76A	single-stranded DNA-binding protein	NA
UHGV-2010877_21	eggNOG-mapper	591001.Acfer_0039	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-2010877_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2010877_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2010877_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2010877_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2010877_21	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2010877_23	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2010877_23	UniRef90	UniRef90_A0A848EVK5	NA	NA
UHGV-2010877_23	eggNOG-mapper	1567014.A0A0A7RTV9_9VIRU	NA	NA
UHGV-2010877_23	Pfam	PF06356	NA	DUF1064
UHGV-2010877_23	Structural annotation	PF06356, MF_04160, NF033179, COG2887	NA	NA
UHGV-2010877_25	PHROG	phrog_236	nucleotide kinase	other
UHGV-2010877_25	Pfam	PF11753	NA	DUF3310
UHGV-2010877_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2010877_26	eggNOG-mapper	568816.Acin_1244	NA	NA
UHGV-2010877_26	Structural annotation	PF08281, TIGR01636, COG1191	NA	NA
UHGV-2010877_27	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2010877_27	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2010877_27	UniRef90	UniRef90_UPI000FD68CF7	ParB N-terminal domain-containing protein	NA
UHGV-2010877_27	eggNOG-mapper	508419.F8J155_9CAUD	helicase activity	NA
UHGV-2010877_27	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2010877_27	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2010877_27	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-2010877_28	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-2010877_28	UniRef90	UniRef90_A0A516LJ12	Putative beta-glucosyl-HMC-alpha-glucosyl-transferase	NA
UHGV-2010877_28	eggNOG-mapper	508419.F8J156_9CAUD	NA	NA
UHGV-2010877_28	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-2010877_28	Structural annotation	PF20691, NF041865, COG1216	NA	NA
UHGV-2010877_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2010877_30	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2010877_30	UniRef90	UniRef90_UPI001D088A8F	PBSX family phage terminase large subunit	NA
UHGV-2010877_30	eggNOG-mapper	1321779.HMPREF1984_01311	Phage terminase, large subunit, PBSX family	NA
UHGV-2010877_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2010877_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2010877_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2010877_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-2010877_30	Structural annotation	PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2010877_31	PHROG	phrog_64	portal protein	head and packaging
UHGV-2010877_31	UniRef90	UniRef90_UPI001D072032	phage portal protein	NA
UHGV-2010877_31	eggNOG-mapper	546273.VEIDISOL_00711	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2010877_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2010877_31	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2010877_32	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2010877_32	UniRef90	UniRef90_UPI001D06CDF6	minor capsid protein	NA
UHGV-2010877_32	eggNOG-mapper	1111454.HMPREF1250_0178	Phage Mu protein F like protein	NA
UHGV-2010877_32	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2010877_32	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2010877_32	COG	COG2369	NA	NA
UHGV-2010877_32	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-2010877_33	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2010877_33	UniRef90	UniRef90_UPI001D078FD1	phage scaffolding protein	NA
UHGV-2010877_33	eggNOG-mapper	699218.HMPREF0889_1452	COG NOG36366 non supervised orthologous group	NA
UHGV-2010877_33	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2010877_33	Structural annotation	PF06810	NA	NA
UHGV-2010877_34	PHROG	phrog_422	major head protein	head and packaging
UHGV-2010877_34	UniRef90	UniRef90_R5SNJ0	Lj928 prophage protein	NA
UHGV-2010877_34	eggNOG-mapper	706434.HMPREF9429_00525	NA	NA
UHGV-2010877_34	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2010877_36	eggNOG-mapper	1111454.HMPREF1250_0173	NA	NA
UHGV-2010877_36	Structural annotation	PF05135	NA	NA
UHGV-2010877_37	PHROG	phrog_615	head-tail adaptor	connector
UHGV-2010877_37	UniRef90	UniRef90_T3D9B6	Putative phage protein	NA
UHGV-2010877_37	eggNOG-mapper	546273.VEIDISOL_01060	NA	NA
UHGV-2010877_37	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-2010877_38	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2010877_38	UniRef90	UniRef90_UPI001D06F932	HK97 gp10 family phage protein	NA
UHGV-2010877_38	eggNOG-mapper	546273.VEIDISOL_01061	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2010877_38	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2010877_39	PHROG	phrog_525	NA	unknown function
UHGV-2010877_39	eggNOG-mapper	1321779.HMPREF1984_01301	NA	NA
UHGV-2010877_39	Pfam	PF20765	NA	DUF6838
UHGV-2010877_39	Structural annotation	PF20765, COG5003	NA	NA
UHGV-2010877_41	PHROG	phrog_279	tail sheath	tail
UHGV-2010877_41	UniRef90	UniRef90_UPI001D08667C	phage tail sheath family protein	NA
UHGV-2010877_41	eggNOG-mapper	546273.VEIDISOL_00720	Phage tail sheath C-terminal domain	NA
UHGV-2010877_41	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-2010877_41	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-2010877_41	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-2010877_41	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-2010877_42	PHROG	phrog_365	tail protein	tail
UHGV-2010877_42	UniRef90	UniRef90_UPI001D068A7F	phage tail tube protein	NA
UHGV-2010877_42	eggNOG-mapper	1111454.HMPREF1250_0167	Phage tail tube protein	NA
UHGV-2010877_42	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-2010877_42	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-2010877_43	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-2010877_43	UniRef90	UniRef90_R5SN61	XkdN-like protein	NA
UHGV-2010877_43	eggNOG-mapper	1111454.HMPREF1250_0166	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-2010877_43	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-2010877_43	Structural annotation	PF08890, COG4518	NA	NA
UHGV-2010877_45	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-2010877_45	UniRef90	UniRef90_UPI001D096802	tape measure protein	NA
UHGV-2010877_45	eggNOG-mapper	546273.VEIDISOL_00724	tape measure	NA
UHGV-2010877_45	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2010877_45	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2010877_45	COG	COG5281	Phage-related minor tail protein	NA
UHGV-2010877_45	Structural annotation	PF20155, COG3941	NA	NA
UHGV-2010877_46	PHROG	phrog_380	endolysin	lysis
UHGV-2010877_46	UniRef90	UniRef90_A0A4R1PW24	LysM domain-containing protein	NA
UHGV-2010877_46	eggNOG-mapper	1123511.KB905868_gene170	PFAM LysM domain	NA
UHGV-2010877_46	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-2010877_46	Structural annotation	PF21821, TIGR01633, COG3499	NA	NA
UHGV-2010877_47	PHROG	phrog_400	tail protein	tail
UHGV-2010877_47	UniRef90	UniRef90_A0A0X8KCS4	Hydrolase	NA
UHGV-2010877_47	eggNOG-mapper	1123511.KB905868_gene169	PFAM Phage late control gene D protein (GPD)	NA
UHGV-2010877_47	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-2010877_47	Structural annotation	PF14594, PF00877, NF033848, NF008096, COG3500	NA	NA
UHGV-2010877_48	PHROG	phrog_579	NA	unknown function
UHGV-2010877_48	UniRef90	UniRef90_UPI001D07A85E	NA	NA
UHGV-2010877_48	eggNOG-mapper	1123511.KB905868_gene168	NA	NA
UHGV-2010877_48	Pfam	PF10844	NA	DUF2577
UHGV-2010877_48	Structural annotation	PF10844	NA	NA
UHGV-2010877_49	PHROG	phrog_120	baseplate protein	tail
UHGV-2010877_49	UniRef90	UniRef90_UPI001D05FF61	NA	NA
UHGV-2010877_49	eggNOG-mapper	1123511.KB905868_gene167	NA	NA
UHGV-2010877_49	Pfam	PF10934	NA	DUF2634
UHGV-2010877_49	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-2010877_49	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-2010877_50	PHROG	phrog_6	baseplate protein	tail
UHGV-2010877_50	UniRef90	UniRef90_UPI001D090E33	baseplate J/gp47 family protein	NA
UHGV-2010877_50	eggNOG-mapper	1123511.KB905868_gene166	Baseplate J-like protein	NA
UHGV-2010877_50	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-2010877_50	COG	COG3299	NA	NA
UHGV-2010877_50	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-2010877_51	PHROG	phrog_521	tail protein	tail
UHGV-2010877_51	UniRef90	UniRef90_UPI001D07DFAB	YmfQ family protein	NA
UHGV-2010877_51	eggNOG-mapper	546273.VEIDISOL_00730	NA	NA
UHGV-2010877_51	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-2010877_51	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-2010877_51	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-2010877_52	Pfam	PF13385	Concanavalin A-like lectin/glucanases superfamily	Laminin_G_3
UHGV-2010877_53	PHROG	phrog_5717	tail protein	tail
UHGV-2010877_53	UniRef90	UniRef90_UPI0008EFFA34	phage tail protein	NA
UHGV-2010877_53	eggNOG-mapper	568816.Acin_1301	tail collar domain protein	NA
UHGV-2010877_53	COG	COG4675	Phage tail collar domain	NA
UHGV-2010877_53	Structural annotation	PF12571, MF_04106, COG5301	NA	NA
UHGV-2010877_54	eggNOG-mapper	568816.Acin_1300	NA	NA
UHGV-2010877_56	PHROG	phrog_24267	NA	unknown function
UHGV-2010877_56	UniRef90	UniRef90_G4Q8U0	Side tail fiber protein from lambdoid prophage Rac	NA
UHGV-2010877_56	eggNOG-mapper	568816.Acin_1822	Collagen triple helix repeat (20 copies)	NA
UHGV-2010877_56	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-2010877_58	eggNOG-mapper	568816.Acin_1216	NA	NA
UHGV-2010877_59	KOfam	K07273	acm; lysozyme	NA
UHGV-2010877_59	PHROG	phrog_6745	endolysin	lysis
UHGV-2010877_59	UniRef90	UniRef90_A0A0U1KWQ3	Glycosyl hydrolase, family 25	NA
UHGV-2010877_59	eggNOG-mapper	1123288.SOV_2c10860	Glycosyl hydrolases family 25	NA
UHGV-2010877_59	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2010877_59	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2010877_59	Structural annotation	PF01183, NF008377, COG3757	NA	NA
UHGV-2010877_60	PHROG	phrog_10797	NA	unknown function
UHGV-2010877_60	UniRef90	UniRef90_A0A0X8K8T8	Glycoprotease	NA
UHGV-2010877_60	eggNOG-mapper	568816.Acin_1214	NA	NA
UHGV-2010877_60	Structural annotation	PF06531	NA	NA
UHGV-2010877_61	eggNOG-mapper	591001.Acfer_1076	NA	NA
UHGV-2010877_61	AcrCatalog	cluster_19223	NA	NA
UHGV-2010877_62	eggNOG-mapper	469378.Ccur_02570	NA	NA
UHGV-2010877_63	UniRef90	UniRef90_UPI0008F42D49	helix-turn-helix domain-containing protein	NA
UHGV-2010877_63	eggNOG-mapper	1410631.JHWZ01000002_gene1263	sequence-specific DNA binding	NA
UHGV-2010877_63	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2010877_63	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-2010877_63	Structural annotation	PF01381, NF040522, COG2944	NA	NA