UHGV-2012319

Genome information

Genome length 35,194 bps

CDS count 58

Completeness 88.17% (medium-quality)

geNomad score 0.9758

Prediction confidence Confident

Genome information
Genome ID	UHGV-2012319
vOTU ID	vOTU-011044
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029118\|Ga0168844_100062\|provirus_23420_58613
BioSample	SAMEA2737843
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.17% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9758
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.07
Jumbo phage	No

Genome content
Genome length	35,194 bps
GC content	36.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	92.62%
Average CDS length	566.02 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2012319_1	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2012319_1	UniRef90	UniRef90_A0A415G5B2	NA	NA
UHGV-2012319_1	eggNOG-mapper	411473.RUMCAL_00360	NA	NA
UHGV-2012319_1	Structural annotation	PF14359	NA	NA
UHGV-2012319_2	PHROG	phrog_443	holin	lysis
UHGV-2012319_2	UniRef90	UniRef90_A0A1I5VN65	Phage r1t holin	NA
UHGV-2012319_2	eggNOG-mapper	411463.EUBVEN_02210	Putative lactococcus lactis phage r1t holin	NA
UHGV-2012319_2	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2012319_2	Structural annotation	PF16945	NA	NA
UHGV-2012319_3	PHROG	phrog_4105	NA	unknown function
UHGV-2012319_3	eggNOG-mapper	1121105.ATXL01000027_gene760	NA	NA
UHGV-2012319_4	eggNOG-mapper	1123075.AUDP01000020_gene1530	Transposase	NA
UHGV-2012319_4	COG	COG4372	NA	NA
UHGV-2012319_6	PHROG	phrog_16164	NA	unknown function
UHGV-2012319_6	UniRef90	UniRef90_A0A174NC72	BppU_N domain-containing protein	NA
UHGV-2012319_6	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-2012319_7	PHROG	phrog_6616	tail protein	tail
UHGV-2012319_7	eggNOG-mapper	1232453.BAIF02000058_gene1641	Phage minor structural protein	NA
UHGV-2012319_7	COG	COG4926	Phage-related protein	NA
UHGV-2012319_7	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-2012319_8	PHROG	phrog_1194	NA	unknown function
UHGV-2012319_8	UniRef90	UniRef90_R5Z572	Putative phage protein	NA
UHGV-2012319_8	eggNOG-mapper	877414.ATWA01000001_gene917	NA	NA
UHGV-2012319_8	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2012319_9	KOfam	K20361	USO1; intracellular protein transport protein USO1	NA
UHGV-2012319_9	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2012319_9	UniRef90	UniRef90_A0A173W8C4	Chromosome segregation protein	NA
UHGV-2012319_9	eggNOG-mapper	1121333.JMLH01000047_gene1009	NA	NA
UHGV-2012319_11	Structural annotation	PF11836	NA	NA
UHGV-2012319_12	UniRef90	UniRef90_R5YR40	Major tail protein putative	NA
UHGV-2012319_12	eggNOG-mapper	1499683.CCFF01000014_gene3903	Phage tail tube protein, TTP	NA
UHGV-2012319_12	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-2012319_12	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-2012319_13	PHROG	phrog_78	tail terminator	connector
UHGV-2012319_13	Structural annotation	PF05657	NA	NA
UHGV-2012319_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2012319_14	UniRef90	UniRef90_R5ZK28	HK97 gp10 family phage protein	NA
UHGV-2012319_14	eggNOG-mapper	1280692.AUJL01000025_gene2076	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2012319_14	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2012319_14	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2012319_14	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-2012319_15	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2012319_16	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2012319_16	Structural annotation	PF05135	NA	NA
UHGV-2012319_18	PHROG	phrog_267	major head protein	head and packaging
UHGV-2012319_18	UniRef90	UniRef90_A0A417IN35	P22 coat protein-protein 5 domain protein	NA
UHGV-2012319_18	eggNOG-mapper	1504823.CCMM01000008_gene1041	P22 coat protein-protein 5 domain protein	NA
UHGV-2012319_18	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-2012319_18	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2012319_19	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-2012319_19	UniRef90	UniRef90_UPI000F53BD28	NA	NA
UHGV-2012319_19	eggNOG-mapper	936154.STP_1289	NA	NA
UHGV-2012319_19	Pfam	PF14265	NA	DUF4355
UHGV-2012319_19	Structural annotation	PF14265	NA	NA
UHGV-2012319_20	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2012319_20	UniRef90	UniRef90_R5YXK3	Phage head morphogenesis protein SPP1 gp7 family	NA
UHGV-2012319_20	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-2012319_20	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2012319_20	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2012319_20	COG	COG2369	NA	NA
UHGV-2012319_20	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-2012319_21	PHROG	phrog_64	portal protein	head and packaging
UHGV-2012319_21	UniRef90	UniRef90_R5YR52	Phage portal protein SPP1 family	NA
UHGV-2012319_21	eggNOG-mapper	877414.ATWA01000001_gene907	Phage portal protein, SPP1 family	NA
UHGV-2012319_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2012319_21	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-2012319_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2012319_22	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2012319_22	UniRef90	UniRef90_A0A173W6A0	Phage terminase, large subunit, PBSX family	NA
UHGV-2012319_22	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-2012319_22	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2012319_22	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2012319_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2012319_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-2012319_22	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2012319_23	PHROG	phrog_2412	NA	unknown function
UHGV-2012319_23	UniRef90	UniRef90_UPI001C38E948	KGG domain-containing protein	NA
UHGV-2012319_23	eggNOG-mapper	1125712.HMPREF1316_1524	NA	NA
UHGV-2012319_23	Structural annotation	PF18932	NA	NA
UHGV-2012319_24	Structural annotation	PF15887, COG4307	NA	NA
UHGV-2012319_26	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-2012319_26	UniRef90	UniRef90_R5YPA6	ParB-like protein	NA
UHGV-2012319_26	eggNOG-mapper	1232449.BAHV02000018_gene1534	NA	NA
UHGV-2012319_26	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2012319_26	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2012319_26	Pfam	PF14386	NA	DUF4417
UHGV-2012319_26	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2012319_26	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-2012319_27	PHROG	phrog_1233	NA	unknown function
UHGV-2012319_27	eggNOG-mapper	1256908.HMPREF0373_00487	NA	NA
UHGV-2012319_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2012319_28	UniRef90	UniRef90_A0A7C6D6F2	Sigma70_r4 domain-containing protein	NA
UHGV-2012319_28	eggNOG-mapper	1111454.HMPREF1250_0009	NA	NA
UHGV-2012319_28	Structural annotation	PF07374, MF_00674, TIGR02984, COG1342	NA	NA
UHGV-2012319_32	eggNOG-mapper	411461.DORFOR_01156	NA	NA
UHGV-2012319_32	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-2012319_33	PHROG	phrog_15198	NA	unknown function
UHGV-2012319_33	UniRef90	UniRef90_A0A373VSI6	NA	NA
UHGV-2012319_33	Pfam	PF04448	NA	DUF551
UHGV-2012319_34	PHROG	phrog_21026	NA	unknown function
UHGV-2012319_35	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2012319_35	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2012319_35	UniRef90	UniRef90_A0A413RDS9	Methyltransferase	NA
UHGV-2012319_35	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-2012319_35	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-2012319_35	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2012319_35	COG	COG0863	DNA modification methylase	NA
UHGV-2012319_35	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-2012319_36	Structural annotation	PF04936	NA	NA
UHGV-2012319_37	PHROG	phrog_17690	NA	unknown function
UHGV-2012319_37	eggNOG-mapper	1235798.C817_03495	NA	NA
UHGV-2012319_39	PHROG	phrog_5070	NA	unknown function
UHGV-2012319_39	UniRef90	UniRef90_C6L9Y5	Bacterial transferase hexapeptide repeat protein	NA
UHGV-2012319_39	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-2012319_39	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-2012319_39	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-2012319_40	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2012319_40	UniRef90	UniRef90_A0A173REQ2	NA	NA
UHGV-2012319_40	eggNOG-mapper	1196322.A370_04251	NA	NA
UHGV-2012319_40	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-2012319_40	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2012319_40	Structural annotation	PF14297	NA	NA
UHGV-2012319_41	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2012319_41	UniRef90	UniRef90_UPI001F2D4613	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2012319_41	eggNOG-mapper	1033737.CAEV01000076_gene539	Endodeoxyribonuclease RusA	NA
UHGV-2012319_41	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2012319_41	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2012319_42	UniRef90	UniRef90_UPI00192A6863	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2012319_42	eggNOG-mapper	857293.CAAU_0790	Endodeoxyribonuclease RusA	NA
UHGV-2012319_42	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2012319_42	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2012319_43	Structural annotation	PF21715, MF_01804, COG1654	NA	NA
UHGV-2012319_44	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2012319_44	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2012319_44	UniRef90	UniRef90_R6FJ83	Single-stranded DNA-binding protein	NA
UHGV-2012319_44	eggNOG-mapper	411463.EUBVEN_00539	Single-stranded DNA-binding protein	NA
UHGV-2012319_44	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2012319_44	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2012319_44	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2012319_45	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2012319_45	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-2012319_45	Structural annotation	PF05772, NF007281	NA	NA
UHGV-2012319_46	PHROG	phrog_14970	NA	unknown function
UHGV-2012319_46	UniRef90	UniRef90_UPI00123F00F5	Rad52/Rad22 family DNA repair protein	NA
UHGV-2012319_46	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-2012319_46	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-2012319_46	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-2012319_47	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2012319_47	UniRef90	UniRef90_UPI001D07E623	siphovirus Gp157 family protein	NA
UHGV-2012319_47	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-2012319_47	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-2012319_47	Structural annotation	PF05565	NA	NA
UHGV-2012319_51	PHROG	phrog_6058	NA	unknown function
UHGV-2012319_51	UniRef90	UniRef90_R6E1Y4	Modification methylase SinI	NA
UHGV-2012319_51	eggNOG-mapper	875454.BAEW01000002_gene501	NA	NA
UHGV-2012319_52	PHROG	phrog_18248	transcriptional regulator	transcription regulation
UHGV-2012319_52	UniRef90	UniRef90_A0A173TZM8	Helix-turn-helix domain	NA
UHGV-2012319_52	eggNOG-mapper	562743.JH976434_gene1051	Helix-turn-helix XRE-family like proteins	NA
UHGV-2012319_52	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2012319_52	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2012319_53	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2012319_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2012319_53	UniRef90	UniRef90_A0A412SB20	XRE family transcriptional regulator	NA
UHGV-2012319_53	eggNOG-mapper	1158612.I580_01859	Helix-turn-helix XRE-family like proteins	NA
UHGV-2012319_53	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2012319_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2012319_53	Structural annotation	PF12844, NF007257, COG1396	NA	NA
UHGV-2012319_56	PHROG	phrog_5319	outer membrane protein	other
UHGV-2012319_56	eggNOG-mapper	1042156.CXIVA_15870	sh3 domain protein	NA
UHGV-2012319_56	COG	COG3103	NA	NA
UHGV-2012319_57	KOfam	K14059	int; integrase	NA
UHGV-2012319_57	PHROG	phrog_1	integrase	integration and excision
UHGV-2012319_57	UniRef90	UniRef90_UPI00093149AF	site-specific integrase	NA
UHGV-2012319_57	eggNOG-mapper	1462527.CCDM010000010_gene473	Phage integrase family	NA
UHGV-2012319_57	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2012319_57	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2012319_57	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2012319_58	UniRef90	UniRef90_A0A3A9A2S5	YolD-like family protein	NA
UHGV-2012319_58	eggNOG-mapper	411463.EUBVEN_02415	YolD-like protein	NA
UHGV-2012319_58	Pfam	PF08863	YolD-like protein	YolD
UHGV-2012319_58	Structural annotation	PF08863, TIGR02728	NA	NA