UHGV-2012418

Genome information

Genome length 22,600 bps

CDS count 35

Completeness 66.70% (medium-quality)

geNomad score 0.9772

Prediction confidence Confident

Genome information
Genome ID	UHGV-2012418
vOTU ID	vOTU-029880
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029131\|Ga0168790_100131\|provirus_77510_100109
BioSample	SAMEA2737771
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.70% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9772
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.08
Jumbo phage	No

Genome content
Genome length	22,600 bps
GC content	52.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	94.10%
Average CDS length	611.49 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2012418_1	KOfam	K14059	int; integrase	NA
UHGV-2012418_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2012418_1	UniRef90	UniRef90_A0A8D4UTK1	Site-specific integrase	NA
UHGV-2012418_1	eggNOG-mapper	568816.Acin_1265	Belongs to the 'phage' integrase family	NA
UHGV-2012418_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-2012418_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2012418_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2012418_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2012418_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2012418_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2012418_3	UniRef90	UniRef90_UPI0009F1A07C	helix-turn-helix domain-containing protein	NA
UHGV-2012418_3	eggNOG-mapper	1000569.HMPREF1040_0220	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-2012418_3	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2012418_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2012418_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2012418_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2012418_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-2012418_4	UniRef90	UniRef90_UPI0005658318	helix-turn-helix domain-containing protein	NA
UHGV-2012418_4	eggNOG-mapper	1132442.KB889752_gene869	Helix-turn-helix XRE-family like proteins	NA
UHGV-2012418_4	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2012418_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2012418_5	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2012418_5	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2012418_5	UniRef90	UniRef90_G4Q2G9	Bro-N domain-containing protein	NA
UHGV-2012418_5	eggNOG-mapper	568816.Acin_1403	Phage antirepressor protein KilAC domain	NA
UHGV-2012418_5	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2012418_5	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2012418_5	COG	COG3617	Prophage antirepressor	NA
UHGV-2012418_5	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-2012418_6	PHROG	phrog_7735	excisionase	integration and excision
UHGV-2012418_6	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2012418_6	Structural annotation	PF12728, MF_01155, NF033787, COG3311	NA	NA
UHGV-2012418_7	PHROG	phrog_14367	NA	unknown function
UHGV-2012418_7	UniRef90	UniRef90_A0A1G5VJC5	LysM domain-containing protein	NA
UHGV-2012418_7	Pfam	PF01476	LysM domain	LysM
UHGV-2012418_7	COG	COG1388	LysM repeat	NA
UHGV-2012418_7	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-2012418_10	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2012418_10	UniRef90	UniRef90_S7HTF0	Phage-type endonuclease	NA
UHGV-2012418_10	eggNOG-mapper	1273103.NM10_01174	YqaJ viral recombinase family protein	NA
UHGV-2012418_10	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-2012418_10	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-2012418_10	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-2012418_10	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-2012418_11	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2012418_11	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2012418_11	UniRef90	UniRef90_A0A134CHR9	Recombination and repair protein RecT	NA
UHGV-2012418_11	eggNOG-mapper	1273103.NM10_01169	Recombinase, phage RecT family	NA
UHGV-2012418_11	Pfam	PF03837	RecT family	RecT
UHGV-2012418_11	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-2012418_11	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2012418_11	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-2012418_13	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2012418_13	eggNOG-mapper	632245.CLP_2716	DnaD domain protein	NA
UHGV-2012418_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2012418_13	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-2012418_14	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2012418_14	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2012418_14	UniRef90	UniRef90_UPI001D07AA17	DnaA/Hda family protein	NA
UHGV-2012418_14	eggNOG-mapper	1111454.HMPREF1250_0279	DNA replication protein	NA
UHGV-2012418_14	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-2012418_14	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2012418_14	Structural annotation	PF01695, MF_00377, NF005378, COG1484	NA	NA
UHGV-2012418_15	PHROG	phrog_6568	NA	unknown function
UHGV-2012418_16	PHROG	phrog_236	nucleotide kinase	other
UHGV-2012418_16	UniRef90	UniRef90_UPI001F0F7AF9	NA	NA
UHGV-2012418_16	eggNOG-mapper	706434.HMPREF9429_00542	NA	NA
UHGV-2012418_16	Pfam	PF11753	NA	DUF3310
UHGV-2012418_17	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2012418_17	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2012418_17	UniRef90	UniRef90_A0A848EVG3	Single-stranded DNA-binding protein	NA
UHGV-2012418_17	eggNOG-mapper	997350.HMPREF9129_1477	Single-stranded DNA-binding protein	NA
UHGV-2012418_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2012418_17	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2012418_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2012418_17	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2012418_17	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2012418_19	Structural annotation	NF034186	NA	NA
UHGV-2012418_20	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2012418_20	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2012418_20	UniRef90	UniRef90_A0A3F2ZSG0	Endodeoxyribonuclease RusA family protein	NA
UHGV-2012418_20	eggNOG-mapper	1123263.AUKY01000072_gene2102	Endodeoxyribonuclease RusA	NA
UHGV-2012418_20	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2012418_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2012418_20	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2012418_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2012418_22	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2012418_22	Structural annotation	PF08281, TIGR01636, COG2739	NA	NA
UHGV-2012418_23	PHROG	phrog_2655	excisionase	integration and excision
UHGV-2012418_23	UniRef90	UniRef90_C9LP91	HTH_59 domain-containing protein	NA
UHGV-2012418_23	eggNOG-mapper	592028.GCWU000321_01370	NA	NA
UHGV-2012418_23	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-2012418_23	Structural annotation	PF20038, TIGR01764	NA	NA
UHGV-2012418_25	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2012418_25	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2012418_25	UniRef90	UniRef90_UPI00122EE402	terminase small subunit	NA
UHGV-2012418_25	eggNOG-mapper	1158607.UAU_05157	Terminase small subunit	NA
UHGV-2012418_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2012418_25	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2012418_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2012418_26	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2012418_26	UniRef90	UniRef90_UPI001D073785	phage terminase large subunit	NA
UHGV-2012418_26	eggNOG-mapper	401526.TcarDRAFT_1283	Phage terminase large subunit (GpA)	NA
UHGV-2012418_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-2012418_26	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2012418_28	PHROG	phrog_156	portal protein	head and packaging
UHGV-2012418_28	UniRef90	UniRef90_F7NK66	Putative phage portal protein	NA
UHGV-2012418_28	eggNOG-mapper	401526.TcarDRAFT_1284	Tfp pilus assembly protein FimV	NA
UHGV-2012418_28	Pfam	PF16510	Phage P22-like portal protein	P22_portal
UHGV-2012418_28	COG	COG3170	Type IV pilus assembly protein FimV	NA
UHGV-2012418_28	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-2012418_30	PHROG	phrog_334	major head protein	head and packaging
UHGV-2012418_30	UniRef90	UniRef90_UPI00138A4297	N4-gp56 family major capsid protein	NA
UHGV-2012418_30	eggNOG-mapper	401526.TcarDRAFT_1286	NA	NA
UHGV-2012418_30	Pfam	PF13252	NA	DUF4043
UHGV-2012418_30	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-2012418_30	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2012418_32	Structural annotation	PF20387	NA	NA
UHGV-2012418_33	eggNOG-mapper	1485543.JMME01000005_gene872	NA	NA
UHGV-2012418_33	Structural annotation	PF11134, MF_03008, NF010237, TIGR04362, COG4257	NA	NA
UHGV-2012418_34	PHROG	phrog_24267	NA	unknown function
UHGV-2012418_34	eggNOG-mapper	908340.HMPREF9406_0178	NA	NA
UHGV-2012418_34	COG	COG4675	Phage tail collar domain	NA
UHGV-2012418_34	Structural annotation	PF20747	NA	NA
UHGV-2012418_35	PHROG	phrog_5717	tail protein	tail
UHGV-2012418_35	eggNOG-mapper	742743.HMPREF9453_00547	tail collar domain protein	NA
UHGV-2012418_35	COG	COG4675	Phage tail collar domain	NA