UHGV-2013692

Genome information

vOTU vOTU-020556

Genome length 24,367 bps

CDS count 37

Completeness 55.72% (medium-quality)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-2013692
vOTU ID	vOTU-020556
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029108\|Ga0169642_100467\|provirus_13201_37567
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.72% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.5
Jumbo phage	No

Genome content
Genome length	24,367 bps
GC content	41.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	93.09%
Average CDS length	617.19 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2013692_1	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-2013692_1	PHROG	phrog_2649	endolysin	lysis
UHGV-2013692_1	UniRef90	UniRef90_R0BKC0	Peptidase_M15_4 domain-containing protein	NA
UHGV-2013692_1	eggNOG-mapper	742733.HMPREF9469_01368	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-2013692_1	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-2013692_1	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-2013692_1	Structural annotation	PF02557, PF19127, MF_01924, NF007557, TIGR04035, COG2173	NA	NA
UHGV-2013692_2	UniRef90	UniRef90_A0A352P5F4	XkdX family protein	NA
UHGV-2013692_2	eggNOG-mapper	1304866.K413DRAFT_3056	NA	NA
UHGV-2013692_2	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-2013692_3	PHROG	phrog_12931	NA	unknown function
UHGV-2013692_4	eggNOG-mapper	411902.CLOBOL_05647	nuclear chromosome segregation	NA
UHGV-2013692_4	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2013692_5	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-2013692_5	Structural annotation	PF07675, NF038128	NA	NA
UHGV-2013692_7	eggNOG-mapper	411902.CLOBOL_00122	NA	NA
UHGV-2013692_8	PHROG	phrog_18725	NA	unknown function
UHGV-2013692_8	eggNOG-mapper	411902.CLOBOL_00123	NA	NA
UHGV-2013692_9	PHROG	phrog_32744	NA	unknown function
UHGV-2013692_9	eggNOG-mapper	411902.CLOBOL_00124	NA	NA
UHGV-2013692_9	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-2013692_10	PHROG	phrog_1194	NA	unknown function
UHGV-2013692_10	eggNOG-mapper	411902.CLOBOL_00125	NA	NA
UHGV-2013692_10	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2013692_11	KOfam	K13582	podJ; localization factor PodJL	NA
UHGV-2013692_11	PHROG	phrog_37543	NA	unknown function
UHGV-2013692_11	UniRef90	UniRef90_UPI001DBC5439	PspA/IM30 family protein	NA
UHGV-2013692_11	eggNOG-mapper	1298920.KI911353_gene2068	domain protein	NA
UHGV-2013692_11	COG	COG1511	NA	NA
UHGV-2013692_11	Structural annotation	PF11172	NA	NA
UHGV-2013692_12	PHROG	phrog_706	NA	unknown function
UHGV-2013692_12	UniRef90	UniRef90_UPI00156F1927	Gp15 family bacteriophage protein	NA
UHGV-2013692_12	eggNOG-mapper	411902.CLOBOL_00127	NA	NA
UHGV-2013692_12	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2013692_12	Structural annotation	PF06854	NA	NA
UHGV-2013692_13	PHROG	phrog_11299	NA	unknown function
UHGV-2013692_13	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-2013692_13	Structural annotation	PF10666	NA	NA
UHGV-2013692_14	PHROG	phrog_3099	NA	unknown function
UHGV-2013692_14	eggNOG-mapper	1120746.CCNL01000014_gene2102	NA	NA
UHGV-2013692_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2013692_15	PHROG	phrog_3266	tail completion	connector
UHGV-2013692_15	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-2013692_15	Structural annotation	PF12691	NA	NA
UHGV-2013692_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2013692_16	UniRef90	UniRef90_UPI0008B4CFF0	minor capsid protein	NA
UHGV-2013692_16	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-2013692_16	Structural annotation	PF11114	NA	NA
UHGV-2013692_17	PHROG	phrog_3366	NA	unknown function
UHGV-2013692_17	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-2013692_17	Structural annotation	PF20536, COG5614	NA	NA
UHGV-2013692_18	PHROG	phrog_1129	holin	lysis
UHGV-2013692_18	UniRef90	UniRef90_A0A417JD09	Enolase	NA
UHGV-2013692_18	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-2013692_18	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2013692_18	Structural annotation	PF06946	NA	NA
UHGV-2013692_19	PHROG	phrog_774	NA	unknown function
UHGV-2013692_19	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-2013692_20	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2013692_20	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-2013692_21	PHROG	phrog_544	major head protein	head and packaging
UHGV-2013692_21	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-2013692_21	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-2013692_21	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-2013692_21	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2013692_22	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2013692_22	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-2013692_22	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-2013692_22	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2013692_22	Structural annotation	PF06810	NA	NA
UHGV-2013692_23	PHROG	phrog_28802	NA	unknown function
UHGV-2013692_23	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-2013692_24	PHROG	phrog_20016	NA	unknown function
UHGV-2013692_24	Structural annotation	PF18573, NF033147	NA	NA
UHGV-2013692_26	PHROG	phrog_16490	NA	unknown function
UHGV-2013692_26	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-2013692_27	PHROG	phrog_22984	NA	unknown function
UHGV-2013692_28	PHROG	phrog_21718	NA	unknown function
UHGV-2013692_28	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-2013692_29	UniRef90	UniRef90_A0A843HPX3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-2013692_29	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-2013692_29	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-2013692_30	UniRef90	UniRef90_A0A3E2U4I9	CTP synthase	NA
UHGV-2013692_30	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-2013692_31	PHROG	phrog_3754	NA	unknown function
UHGV-2013692_31	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-2013692_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2013692_33	UniRef90	UniRef90_D2XPY3	Gp4-like protein	NA
UHGV-2013692_33	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-2013692_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2013692_33	COG	COG2369	NA	NA
UHGV-2013692_34	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2013692_34	UniRef90	UniRef90_A0A396KBA8	AP2 domain-containing protein	NA
UHGV-2013692_34	eggNOG-mapper	357276.EL88_11255	NA	NA
UHGV-2013692_35	PHROG	phrog_3180	Arc-like repressor	transcription regulation
UHGV-2013692_35	UniRef90	UniRef90_A0A173R8U8	Ribbon-helix-helix domain	NA
UHGV-2013692_35	eggNOG-mapper	476272.RUMHYD_01909	Ribbon-helix-helix domain	NA
UHGV-2013692_35	Pfam	PF12651	Ribbon-helix-helix domain	RHH_3
UHGV-2013692_35	Structural annotation	PF12651, COG4710	NA	NA
UHGV-2013692_36	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2013692_36	UniRef90	UniRef90_A0A412EKN3	Phage capsid protein	NA
UHGV-2013692_36	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-2013692_36	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2013692_36	COG	COG2369	NA	NA
UHGV-2013692_36	Structural annotation	PF06152	NA	NA
UHGV-2013692_37	UniRef90	UniRef90_A0A174NC72	BppU_N domain-containing protein	NA
UHGV-2013692_37	eggNOG-mapper	742733.HMPREF9469_00973	NA	NA