UHGV-2014110

Genome information

Genome length 40,620 bps

CDS count 65

Completeness 91.71% (high-quality)

geNomad score 0.9716

Prediction confidence Confident

Genome information
Genome ID	UHGV-2014110
vOTU ID	vOTU-062219
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029117\|Ga0168818_100194\|provirus_12899_53518
BioSample	SAMEA2737799
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.71% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9716
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31
Jumbo phage	No

Genome content
Genome length	40,620 bps
GC content	47.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	89.05%
Average CDS length	559.75 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2014110_1	UniRef90	UniRef90_G0VPB1	Prophage LambdaCh01	NA
UHGV-2014110_1	eggNOG-mapper	1064535.MELS_1067	NA	NA
UHGV-2014110_2	PHROG	phrog_5783	NA	unknown function
UHGV-2014110_2	UniRef90	UniRef90_A0A1M6S8W7	NYN domain-containing protein	NA
UHGV-2014110_2	eggNOG-mapper	1262914.BN533_00810	NYN domain	NA
UHGV-2014110_2	Pfam	PF01936	NYN domain	NYN
UHGV-2014110_2	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-2014110_2	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-2014110_3	PHROG	phrog_9699	NA	unknown function
UHGV-2014110_3	eggNOG-mapper	679201.HMPREF9334_00292	NA	NA
UHGV-2014110_5	COG	COG1464	ABC-type metal ion transport system, periplasmic component/surface antigen	NA
UHGV-2014110_6	UniRef90	UniRef90_A0A6N7W2D5	SWIM-type domain-containing protein	NA
UHGV-2014110_6	eggNOG-mapper	525254.HMPREF0072_1328	Swim zinc finger domain protein	NA
UHGV-2014110_7	PHROG	phrog_26910	NA	unknown function
UHGV-2014110_7	eggNOG-mapper	536232.CLM_1686	NA	NA
UHGV-2014110_7	Structural annotation	PF05800	NA	NA
UHGV-2014110_8	PHROG	phrog_87	metallo-protease	other
UHGV-2014110_8	UniRef90	UniRef90_A0A2A2IMI7	Peptidase_M78 domain-containing protein	NA
UHGV-2014110_8	eggNOG-mapper	1449126.JQKL01000069_gene3621	IrrE N-terminal-like domain	NA
UHGV-2014110_8	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2014110_8	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2014110_8	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2014110_9	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2014110_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2014110_9	UniRef90	UniRef90_A0A1M6WP79	Helix-turn-helix	NA
UHGV-2014110_9	eggNOG-mapper	1280706.AUJE01000003_gene2286	Transcriptional	NA
UHGV-2014110_9	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2014110_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2014110_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2014110_10	UniRef90	UniRef90_UPI00047DC3F8	helix-turn-helix transcriptional regulator	NA
UHGV-2014110_10	eggNOG-mapper	272626.lin2421	sequence-specific DNA binding	NA
UHGV-2014110_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2014110_10	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2014110_11	PHROG	phrog_31924	NA	unknown function
UHGV-2014110_11	Structural annotation	COG3831	NA	NA
UHGV-2014110_14	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-2014110_14	UniRef90	UniRef90_G0VPB9	Helix-turn-helix domain protein	NA
UHGV-2014110_14	eggNOG-mapper	1064535.MELS_1075	Helix-turn-helix XRE-family like proteins	NA
UHGV-2014110_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2014110_14	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-2014110_14	Structural annotation	PF13560, MF_00535, TIGR03070, COG1476	NA	NA
UHGV-2014110_16	PHROG	phrog_585	NA	unknown function
UHGV-2014110_16	UniRef90	UniRef90_A0A412CHE5	NA	NA
UHGV-2014110_16	eggNOG-mapper	862517.HMPREF9225_1672	NA	NA
UHGV-2014110_16	Pfam	PF10711	NA	DUF2513
UHGV-2014110_17	UniRef90	UniRef90_A0A1C5TEV4	DNA binding domain, excisionase family	NA
UHGV-2014110_17	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2014110_17	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-2014110_18	PHROG	phrog_25045	NA	unknown function
UHGV-2014110_18	UniRef90	UniRef90_G0VPC2	LysM domain-containing protein	NA
UHGV-2014110_18	eggNOG-mapper	1064535.MELS_1078	LysM domain	NA
UHGV-2014110_18	Pfam	PF01476	LysM domain	LysM
UHGV-2014110_18	COG	COG1388	LysM repeat	NA
UHGV-2014110_18	Structural annotation	PF01476, MF_02014, NF010723, COG1388	NA	NA
UHGV-2014110_19	eggNOG-mapper	1232428.CAVO010000003_gene1016	NA	NA
UHGV-2014110_20	PHROG	phrog_32878	NA	unknown function
UHGV-2014110_20	Structural annotation	NF041588	NA	NA
UHGV-2014110_21	PHROG	phrog_11947	NA	unknown function
UHGV-2014110_23	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-2014110_23	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2014110_23	UniRef90	UniRef90_G0VPC5	Cobyrinic acid ac-diamide synthase	NA
UHGV-2014110_23	eggNOG-mapper	1064535.MELS_1081	AAA domain	NA
UHGV-2014110_23	Pfam	PF13614	AAA domain	AAA_31
UHGV-2014110_23	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-2014110_23	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-2014110_24	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2014110_24	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2014110_24	UniRef90	UniRef90_S7HSP3	ParB domain-containing protein	NA
UHGV-2014110_24	eggNOG-mapper	1273103.NM10_02327	ParB-like nuclease domain	NA
UHGV-2014110_24	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2014110_24	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2014110_24	Structural annotation	PF14072, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-2014110_25	PHROG	phrog_37395	NA	unknown function
UHGV-2014110_27	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2014110_27	eggNOG-mapper	1273103.NM10_02312	NA	NA
UHGV-2014110_27	Structural annotation	PF21578	NA	NA
UHGV-2014110_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2014110_31	UniRef90	UniRef90_A0A6N2ZMD2	Sigma-70, region 4	NA
UHGV-2014110_31	eggNOG-mapper	679201.HMPREF9334_00472	NA	NA
UHGV-2014110_32	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-2014110_32	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-2014110_32	eggNOG-mapper	1273103.NM10_02282	NA	NA
UHGV-2014110_32	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-2014110_32	Structural annotation	PF07471, NF040990, COG4220	NA	NA
UHGV-2014110_33	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-2014110_33	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-2014110_33	UniRef90	UniRef90_A0A2S0M817	Terminase	NA
UHGV-2014110_33	eggNOG-mapper	1064535.MELS_1091	Phage terminase large subunit (GpA)	NA
UHGV-2014110_33	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-2014110_33	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-2014110_33	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-2014110_33	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-2014110_33	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-2014110_34	PHROG	phrog_118	head-tail adaptor	connector
UHGV-2014110_34	UniRef90	UniRef90_UPI00073EF5B2	NA	NA
UHGV-2014110_34	eggNOG-mapper	1064535.MELS_1092	NA	NA
UHGV-2014110_34	Pfam	PF19645	NA	DUF6148
UHGV-2014110_34	Structural annotation	PF19645	NA	NA
UHGV-2014110_35	PHROG	phrog_21	portal protein	head and packaging
UHGV-2014110_35	UniRef90	UniRef90_G0VPD7	Phage portal protein	NA
UHGV-2014110_35	eggNOG-mapper	1273103.NM10_02267	Phage portal protein	NA
UHGV-2014110_35	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-2014110_35	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-2014110_35	COG	COG5511	Phage capsid protein	NA
UHGV-2014110_35	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-2014110_36	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2014110_36	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2014110_36	UniRef90	UniRef90_S7J8Y4	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2014110_36	eggNOG-mapper	1064535.MELS_1094	Clp protease	NA
UHGV-2014110_36	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2014110_36	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2014110_36	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-2014110_37	PHROG	phrog_49	head decoration	head and packaging
UHGV-2014110_37	UniRef90	UniRef90_UPI00073F9C7C	head decoration protein	NA
UHGV-2014110_37	eggNOG-mapper	1064535.MELS_1095	Bacteriophage lambda head decoration protein D	NA
UHGV-2014110_37	Structural annotation	PF02924, COG5471	NA	NA
UHGV-2014110_38	PHROG	phrog_29	major head protein	head and packaging
UHGV-2014110_38	UniRef90	UniRef90_UPI00073E3456	major capsid protein	NA
UHGV-2014110_38	eggNOG-mapper	1064535.MELS_1096	Phage major capsid protein E	NA
UHGV-2014110_38	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-2014110_38	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-2014110_39	PHROG	phrog_30475	NA	unknown function
UHGV-2014110_40	PHROG	phrog_2551	minor tail protein	tail
UHGV-2014110_40	UniRef90	UniRef90_J4KCN4	Sugar ABC transporter, ATP-binding protein	NA
UHGV-2014110_40	eggNOG-mapper	1064535.MELS_1098	NA	NA
UHGV-2014110_40	Structural annotation	PF13856	NA	NA
UHGV-2014110_41	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-2014110_41	UniRef90	UniRef90_UPI0018C7933C	phage tail protein	NA
UHGV-2014110_41	eggNOG-mapper	1273103.NM10_02237	Prophage minor tail protein Z (GPZ)	NA
UHGV-2014110_41	Pfam	PF06763	Prophage minor tail protein Z (GPZ)	Minor_tail_Z
UHGV-2014110_41	Structural annotation	PF06763	NA	NA
UHGV-2014110_42	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-2014110_42	eggNOG-mapper	1064535.MELS_1100	NA	NA
UHGV-2014110_42	Structural annotation	PF08873, COG5003	NA	NA
UHGV-2014110_43	PHROG	phrog_4089	NA	unknown function
UHGV-2014110_44	KOfam	K06907	NA	NA
UHGV-2014110_44	PHROG	phrog_23	tail sheath	tail
UHGV-2014110_44	UniRef90	UniRef90_A0A316QEM2	Phage tail protein	NA
UHGV-2014110_44	eggNOG-mapper	1273103.NM10_02222	COG3497 Phage tail sheath protein FI	NA
UHGV-2014110_44	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-2014110_44	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-2014110_45	KOfam	K06908	NA	NA
UHGV-2014110_45	PHROG	phrog_55	head closure	connector
UHGV-2014110_45	UniRef90	UniRef90_S7J3W7	Phage major tail tube protein	NA
UHGV-2014110_45	eggNOG-mapper	1273103.NM10_02217	tail tube protein	NA
UHGV-2014110_45	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-2014110_45	COG	COG3498	Phage tail tube protein FII	NA
UHGV-2014110_45	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-2014110_46	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-2014110_46	UniRef90	UniRef90_A0A075KG58	Mu-like prophage FluMu protein gp41	NA
UHGV-2014110_46	eggNOG-mapper	484770.UFO1_1707	NA	NA
UHGV-2014110_46	Structural annotation	PF10109	NA	NA
UHGV-2014110_47	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-2014110_47	UniRef90	UniRef90_G0VPE9	Putative phage tail protein	NA
UHGV-2014110_47	eggNOG-mapper	1064535.MELS_1105	Phage-related minor tail protein	NA
UHGV-2014110_47	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2014110_47	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2014110_47	COG	COG5283	Phage-related tail protein	NA
UHGV-2014110_47	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-2014110_48	PHROG	phrog_46	tail protein	tail
UHGV-2014110_48	UniRef90	UniRef90_G0VPF0	Phage Tail Protein X	NA
UHGV-2014110_48	eggNOG-mapper	1064535.MELS_1106	Phage Tail Protein X	NA
UHGV-2014110_48	Pfam	PF05489	Phage Tail Protein X	Phage_tail_X
UHGV-2014110_48	COG	COG5004	P2-like prophage tail protein X	NA
UHGV-2014110_48	Structural annotation	PF05489, TIGR02899, COG5004	NA	NA
UHGV-2014110_49	KOfam	K06905	NA	NA
UHGV-2014110_49	PHROG	phrog_52	tail protein	tail
UHGV-2014110_49	UniRef90	UniRef90_G0VPF1	Putative phage regulatory protein	NA
UHGV-2014110_49	eggNOG-mapper	1273103.NM10_08044	COG3500 Phage protein D	NA
UHGV-2014110_49	COG	COG3500	NA	NA
UHGV-2014110_49	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-2014110_50	PHROG	phrog_6142	baseplate assembly protein	tail
UHGV-2014110_50	UniRef90	UniRef90_G0VPF2	Prophage MuMc02	NA
UHGV-2014110_50	eggNOG-mapper	1273103.NM10_08049	Phage baseplate assembly protein V	NA
UHGV-2014110_50	Pfam	PF18946	GpV Apex motif	Apex
UHGV-2014110_50	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-2014110_50	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-2014110_50	Structural annotation	PF05606, MF_00216, TIGR01644, COG4540	NA	NA
UHGV-2014110_51	PHROG	phrog_76	tail protein	tail
UHGV-2014110_51	UniRef90	UniRef90_UPI0011C8292A	phage tail protein	NA
UHGV-2014110_51	eggNOG-mapper	1064535.MELS_1109	Phage P2 GpU	NA
UHGV-2014110_51	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-2014110_51	COG	COG3499	NA	NA
UHGV-2014110_51	Structural annotation	PF06995, TIGR01633, COG3499	NA	NA
UHGV-2014110_52	KOfam	K06903	NA	NA
UHGV-2014110_52	PHROG	phrog_43	baseplate wedge subunit	tail
UHGV-2014110_52	UniRef90	UniRef90_A0A6I2UI30	GPW_gp25 domain-containing protein	NA
UHGV-2014110_52	eggNOG-mapper	1064535.MELS_1110	GPW Gp25 family protein	NA
UHGV-2014110_52	Pfam	PF04965	Baseplate wedge protein gp25	GPW_gp25
UHGV-2014110_52	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-2014110_52	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-2014110_53	PHROG	phrog_6	baseplate protein	tail
UHGV-2014110_53	UniRef90	UniRef90_G0VPF5	Putative bacteriophage baseplate assembly protein	NA
UHGV-2014110_53	eggNOG-mapper	1273103.NM10_08064	Baseplate J-like protein	NA
UHGV-2014110_53	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-2014110_53	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-2014110_53	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-2014110_54	PHROG	phrog_48	tail protein	tail
UHGV-2014110_54	UniRef90	UniRef90_S7HLL6	Phage tail protein	NA
UHGV-2014110_54	eggNOG-mapper	1273103.NM10_08069	Phage tail protein (Tail_P2_I)	NA
UHGV-2014110_54	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-2014110_54	NCBIFam	TIGR01634.1	phage tail protein I	NA
UHGV-2014110_54	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-2014110_54	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-2014110_55	PHROG	phrog_7037	tail fiber protein	tail
UHGV-2014110_55	UniRef90	UniRef90_UPI0018C70641	phage tail protein	NA
UHGV-2014110_55	eggNOG-mapper	1232428.CAVO010000003_gene994	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-2014110_55	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-2014110_55	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2014110_55	Structural annotation	PF12571	NA	NA
UHGV-2014110_58	KOfam	K14059	int; integrase	NA
UHGV-2014110_58	PHROG	phrog_1	integrase	integration and excision
UHGV-2014110_58	UniRef90	UniRef90_A0A1C5UD11	Tyrosine recombinase XerD	NA
UHGV-2014110_58	eggNOG-mapper	1273103.NM10_01678	Phage integrase family	NA
UHGV-2014110_58	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2014110_58	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2014110_58	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2014110_62	eggNOG-mapper	1123511.KB905868_gene160	NA	NA
UHGV-2014110_63	KOfam	K07273	acm; lysozyme	NA
UHGV-2014110_63	PHROG	phrog_291	endolysin	lysis
UHGV-2014110_63	UniRef90	UniRef90_A0A1M6N739	Glycosyl hydrolases family 25	NA
UHGV-2014110_63	eggNOG-mapper	1485543.JMME01000005_gene885	lysozyme activity	NA
UHGV-2014110_63	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2014110_63	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2014110_63	Structural annotation	PF01183, NF008377, COG3757	NA	NA
UHGV-2014110_64	PHROG	phrog_18996	NA	unknown function
UHGV-2014110_64	eggNOG-mapper	888060.HMPREF9081_1537	NA	NA
UHGV-2014110_65	KOfam	K14059	int; integrase	NA
UHGV-2014110_65	PHROG	phrog_1	integrase	integration and excision
UHGV-2014110_65	UniRef90	UniRef90_A0A1C5TDI5	Integrase	NA
UHGV-2014110_65	eggNOG-mapper	706434.HMPREF9429_00599	Belongs to the 'phage' integrase family	NA
UHGV-2014110_65	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2014110_65	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2014110_65	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA