UHGV-2014157

Genome information

Genome length 31,603 bps

CDS count 36

Completeness 77.74% (medium-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-2014157
vOTU ID	vOTU-041447
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029166\|Ga0120224_10016\|provirus_214446_246048
BioSample	SAMN03295852
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.74% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	30
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.49
Jumbo phage	No

Genome content
Genome length	31,603 bps
GC content	51.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	92.37%
Average CDS length	813.58 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2014157_1	PHROG	phrog_189	RecA filament binding protein DinI	DNA, RNA and nucleotide metabolism
UHGV-2014157_1	UniRef90	UniRef90_UPI00125427D7	DinI family protein	NA
UHGV-2014157_1	eggNOG-mapper	1399774.JDWH01000044_gene1728	DinI-like family	NA
UHGV-2014157_1	Pfam	PF06183	DinI-like family	DinI
UHGV-2014157_1	Structural annotation	PF06183, NF007893	NA	NA
UHGV-2014157_2	PHROG	phrog_1591	tail fiber protein	tail
UHGV-2014157_2	UniRef90	UniRef90_A0A8B6A036	Phage tail protein	NA
UHGV-2014157_2	eggNOG-mapper	432200.K7P6I4_9CAUD	NA	NA
UHGV-2014157_2	Structural annotation	PF12195	NA	NA
UHGV-2014157_3	PHROG	phrog_1265	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-2014157_3	UniRef90	UniRef90_UPI0015E7AA44	NA	NA
UHGV-2014157_3	eggNOG-mapper	716541.ECL_01716	NA	NA
UHGV-2014157_3	Pfam	PF20051	NA	DUF6453
UHGV-2014157_3	Structural annotation	PF20051	NA	NA
UHGV-2014157_4	PHROG	phrog_2589	tail protein	tail
UHGV-2014157_4	UniRef90	UniRef90_UPI000735DCDC	phage tail protein	NA
UHGV-2014157_4	eggNOG-mapper	716541.ECL_01715	Fibronectin type 3 domain	NA
UHGV-2014157_4	Pfam	PF09327	NA	DUF1983
UHGV-2014157_4	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-2014157_4	Structural annotation	PF09327, PF13550, PF16323, PF16383, PF14109, NF040662, COG4733	NA	NA
UHGV-2014157_5	PHROG	phrog_32	tail assembly protein	tail
UHGV-2014157_5	UniRef90	UniRef90_UPI00075178E2	tail assembly protein	NA
UHGV-2014157_5	eggNOG-mapper	573.JG24_08680	lambda tail assembly I	NA
UHGV-2014157_5	COG	COG4723	Phage-related protein, tail assembly protein I	NA
UHGV-2014157_5	Structural annotation	PF06805, NF008347, COG4723	NA	NA
UHGV-2014157_6	PHROG	phrog_890	lipoprotein	other
UHGV-2014157_6	UniRef90	UniRef90_UPI000949B088	lipoprotein	NA
UHGV-2014157_6	eggNOG-mapper	573.JG24_08675	NA	NA
UHGV-2014157_6	Structural annotation	PF11008, TIGR03000, COG4704	NA	NA
UHGV-2014157_7	KOfam	K21140	mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6]	NA
UHGV-2014157_7	PHROG	phrog_30	minor tail protein	tail
UHGV-2014157_7	UniRef90	UniRef90_A0A7Z8BXK9	Peptidase P60	NA
UHGV-2014157_7	eggNOG-mapper	1147158.K7PGV2_9CAUD	peptidoglycan catabolic process	NA
UHGV-2014157_7	Pfam	PF14464	Prokaryotic homologs of the JAB domain	Prok-JAB
UHGV-2014157_7	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-2014157_7	Structural annotation	PF14464, PF00877, NF041370, TIGR02219, COG1310, COG0791	NA	NA
UHGV-2014157_8	PHROG	phrog_18	minor tail protein	tail
UHGV-2014157_8	UniRef90	UniRef90_Q9MCS1	Gp18	NA
UHGV-2014157_8	eggNOG-mapper	906668.G8C7J7_9CAUD	Phage minor tail protein L	NA
UHGV-2014157_8	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-2014157_8	NCBIFam	TIGR01600.1	phage minor tail protein L	NA
UHGV-2014157_8	Structural annotation	PF05100, TIGR01600, COG4672	NA	NA
UHGV-2014157_9	PHROG	phrog_14	minor tail protein	tail
UHGV-2014157_9	UniRef90	UniRef90_A0A156KFG0	Phage tail protein	NA
UHGV-2014157_9	eggNOG-mapper	255431.Q6UAW6_9CAUD	Phage minor tail protein	NA
UHGV-2014157_9	Pfam	PF05939	Phage minor tail protein	Phage_min_tail
UHGV-2014157_9	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-2014157_10	PHROG	phrog_339	tail length tape measure protein	tail
UHGV-2014157_10	UniRef90	UniRef90_A0A133LNY9	Phage tail tape measure protein, TP901 family	NA
UHGV-2014157_10	eggNOG-mapper	1453496.AT03_15205	COG5281, Phage-related minor tail protein	NA
UHGV-2014157_10	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2014157_10	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2014157_10	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2014157_10	Structural annotation	PF20155, PF06120, TIGR02338, TIGR01541, COG5281	NA	NA
UHGV-2014157_11	PHROG	phrog_25875	tail assembly chaperone	tail
UHGV-2014157_11	UniRef90	UniRef90_A0A133LNI0	Phage tail protein	NA
UHGV-2014157_11	eggNOG-mapper	1453496.AT03_15210	Phage tail assembly chaperone protein, TAC	NA
UHGV-2014157_11	Pfam	PF16462	Phage tail assembly chaperone protein, TAC	Phage_TAC_14
UHGV-2014157_11	Structural annotation	PF16462, TIGR01674	NA	NA
UHGV-2014157_12	PHROG	phrog_158	major tail protein	tail
UHGV-2014157_12	UniRef90	UniRef90_A0A1M5IW55	Phage tail tube protein family protein	NA
UHGV-2014157_12	eggNOG-mapper	371042.NG99_26175	Phage tail tube protein family	NA
UHGV-2014157_12	Pfam	PF16463	Phage tail tube protein family	Phage_TTP_13
UHGV-2014157_12	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-2014157_13	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2014157_13	UniRef90	UniRef90_A0A133LNJ5	Phage protein, HK97 gp10 family	NA
UHGV-2014157_13	eggNOG-mapper	517433.PanABDRAFT_0995	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2014157_13	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2014157_13	Structural annotation	TIGR01725	NA	NA
UHGV-2014157_14	PHROG	phrog_347	tail terminator	connector
UHGV-2014157_14	UniRef90	UniRef90_Q6UAX2	Gp10	NA
UHGV-2014157_14	eggNOG-mapper	371042.NG99_26185	NA	NA
UHGV-2014157_14	Structural annotation	PF12691	NA	NA
UHGV-2014157_15	PHROG	phrog_25	head closure Hc1	connector
UHGV-2014157_15	UniRef90	UniRef90_A0A330G495	Head-tail adaptor protein	NA
UHGV-2014157_15	eggNOG-mapper	517433.PanABDRAFT_0993	Phage head-tail joining protein	NA
UHGV-2014157_15	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2014157_15	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2014157_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2014157_16	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2014157_16	UniRef90	UniRef90_A0A837F2Q3	NA	NA
UHGV-2014157_16	eggNOG-mapper	1399774.JDWH01000034_gene1974	Phage gp6-like head-tail connector protein	NA
UHGV-2014157_16	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2014157_16	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2014157_16	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2014157_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-2014157_17	UniRef90	UniRef90_A0A133LP05	Phage major capsid protein, HK97 family	NA
UHGV-2014157_17	eggNOG-mapper	1399774.JDWH01000035_gene2224	capsid protein	NA
UHGV-2014157_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2014157_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2014157_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2014157_17	Structural annotation	PF05065, MF_04113, TIGR01554, COG4653	NA	NA
UHGV-2014157_18	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2014157_18	PHROG	phrog_1684	head maturation protease	head and packaging
UHGV-2014157_18	UniRef90	UniRef90_A0A837F7M9	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2014157_18	eggNOG-mapper	1147150.K7PH05_9CAUD	Clp protease	NA
UHGV-2014157_18	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2014157_18	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-2014157_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-2014157_19	UniRef90	UniRef90_A0A330G3S9	Phage portal protein	NA
UHGV-2014157_19	eggNOG-mapper	1147150.K7PJU5_9CAUD	Phage portal protein	NA
UHGV-2014157_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2014157_19	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2014157_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2014157_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2014157_20	UniRef90	UniRef90_A0A2P5GP33	Terminase	NA
UHGV-2014157_20	eggNOG-mapper	1147150.K7PKT2_9CAUD	Phage Terminase	NA
UHGV-2014157_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2014157_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2014157_20	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2014157_21	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2014157_21	UniRef90	UniRef90_K7PHI2	Terminase small subunit	NA
UHGV-2014157_21	eggNOG-mapper	1147150.K7PHI2_9CAUD	Phage terminase, small subunit	NA
UHGV-2014157_21	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2014157_21	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-2014157_21	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2014157_22	PHROG	phrog_17731	NA	unknown function
UHGV-2014157_23	PHROG	phrog_854	glucosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-2014157_23	eggNOG-mapper	1399774.JDWH01000016_gene3435	Glycosyl transferase, family 2	NA
UHGV-2014157_23	COG	COG0463	Glycosyltransferase involved in cell wall bisynthesis	NA
UHGV-2014157_23	Structural annotation	PF03071, TIGR03937, COG3306	NA	NA
UHGV-2014157_24	PHROG	phrog_21164	NA	unknown function
UHGV-2014157_25	PHROG	phrog_11851	NA	unknown function
UHGV-2014157_26	PHROG	phrog_1579	glycosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-2014157_26	UniRef90	UniRef90_A0A837F8C8	Glycosyltransferase	NA
UHGV-2014157_26	eggNOG-mapper	716541.ECL_01682	Glycosyl transferase, family 2	NA
UHGV-2014157_26	COG	COG1216	Glycosyltransferase, GT2 family	NA
UHGV-2014157_26	Structural annotation	PF03414, PF13641, MF_01520, TIGR03965, NF041524, COG1216, COG1442	NA	NA
UHGV-2014157_27	UniRef90	UniRef90_A0A8F4AAF3	GNAT family N-acetyltransferase	NA
UHGV-2014157_27	eggNOG-mapper	338969.Rfer_4419	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins	NA
UHGV-2014157_27	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-2014157_27	COG	COG1670	Protein N-acetyltransferase, RimJ/RimL family	NA
UHGV-2014157_28	PHROG	phrog_1026	Rz-like spanin	lysis
UHGV-2014157_28	eggNOG-mapper	911008.GLAD_00551	NA	NA
UHGV-2014157_29	KOfam	K22918	ttsA; typhoid toxin secretion A	NA
UHGV-2014157_29	PHROG	phrog_315	endolysin	lysis
UHGV-2014157_29	UniRef90	UniRef90_A0A2J0R5K6	PG_binding_3 domain-containing protein	NA
UHGV-2014157_29	eggNOG-mapper	911008.GLAD_00552	secretion activating protein	NA
UHGV-2014157_29	Pfam	PF05838	Glycosyl hydrolase 108	Glyco_hydro_108
UHGV-2014157_29	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-2014157_29	COG	COG3926	Lysozyme family protein	NA
UHGV-2014157_29	Structural annotation	PF05838, PF09374, NF040573, COG3926	NA	NA
UHGV-2014157_30	PHROG	phrog_217	holin	lysis
UHGV-2014157_30	UniRef90	UniRef90_A0A4R6EWW1	Putative 3TM holin	NA
UHGV-2014157_30	eggNOG-mapper	393305.YE1814	Putative 3TM holin, Phage_holin_3	NA
UHGV-2014157_30	Pfam	PF05449	Putative 3TM holin, Phage_holin_3	Phage_holin_3_7
UHGV-2014157_31	PHROG	phrog_198	holin	lysis
UHGV-2014157_31	UniRef90	UniRef90_A0A4R6EWX6	Putative phage holin	NA
UHGV-2014157_31	eggNOG-mapper	93220.LV28_12265	Putative phage holin	NA
UHGV-2014157_31	Pfam	PF16931	Putative phage holin	Phage_holin_8
UHGV-2014157_31	Structural annotation	PF16931	NA	NA
UHGV-2014157_32	PHROG	phrog_127	anti-termination protein Q-like	transcription regulation
UHGV-2014157_32	UniRef90	UniRef90_A0A7V7M992	Antitermination protein	NA
UHGV-2014157_32	eggNOG-mapper	1197719.A464_2031	Antitermination protein	NA
UHGV-2014157_32	Pfam	PF03589	Antitermination protein	Antiterm
UHGV-2014157_32	COG	COG0484	DnaJ-class molecular chaperone with C-terminal Zn finger domain	NA
UHGV-2014157_32	HAMAP	MF_04158	Antitermination protein Q [Q]	NA
UHGV-2014157_32	Structural annotation	PF03589, PF00684, MF_04158, TIGR02642	NA	NA
UHGV-2014157_33	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-2014157_33	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-2014157_33	UniRef90	UniRef90_A0A0J6MQJ8	DNA replication protein	NA
UHGV-2014157_33	eggNOG-mapper	1397284.AYMN01000067_gene2197	Toprim-like	NA
UHGV-2014157_33	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-2014157_33	Pfam	PF13481	AAA domain	AAA_25
UHGV-2014157_33	COG	COG0305	Replicative DNA helicase	NA
UHGV-2014157_33	Structural annotation	PF03796, PF01807, PF12965, MF_04154, NF040583, COG0305	NA	NA
UHGV-2014157_34	PHROG	phrog_21848	NA	unknown function
UHGV-2014157_35	PHROG	phrog_9773	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-2014157_35	UniRef90	UniRef90_A0A740F8J9	Recombination protein NinG	NA
UHGV-2014157_35	eggNOG-mapper	1443113.LC20_01729	NA	NA
UHGV-2014157_35	COG	COG3756	NA	NA
UHGV-2014157_35	Structural annotation	PF04492, TIGR01610	NA	NA
UHGV-2014157_36	PHROG	phrog_1343	NA	unknown function
UHGV-2014157_36	UniRef90	UniRef90_UPI000B9EDA5A	NA	NA
UHGV-2014157_36	eggNOG-mapper	932213.SPM24T3_09701	NA	NA
UHGV-2014157_36	Pfam	PF13973	NA	DUF4222
UHGV-2014157_36	Structural annotation	PF13973, MF_00667	NA	NA