UHGV-2014496

Genome information

Genome length 38,722 bps

CDS count 53

Completeness 93.74% (high-quality)

geNomad score 0.9761

Prediction confidence Confident

Genome information
Genome ID	UHGV-2014496
vOTU ID	vOTU-011132
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029112\|Ga0168820_100054\|provirus_137441_183473
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.74% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	23
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9761
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.2
Jumbo phage	No

Genome content
Genome length	38,722 bps
GC content	40.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	91.10%
Average CDS length	669.17 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2014496_1	PHROG	phrog_443	holin	lysis
UHGV-2014496_1	UniRef90	UniRef90_UPI001F16E4E6	holin	NA
UHGV-2014496_1	eggNOG-mapper	411462.DORLON_00825	Putative lactococcus lactis phage r1t holin	NA
UHGV-2014496_1	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2014496_1	Structural annotation	PF16945	NA	NA
UHGV-2014496_2	PHROG	phrog_23452	NA	unknown function
UHGV-2014496_2	UniRef90	UniRef90_A0A174JNC4	Zinc D-Ala-D-Ala carboxypeptidase	NA
UHGV-2014496_2	eggNOG-mapper	1280698.AUJS01000010_gene819	Putative peptidoglycan binding domain	NA
UHGV-2014496_2	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2014496_2	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-2014496_2	Structural annotation	PF01471, COG3409	NA	NA
UHGV-2014496_3	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2014496_3	PHROG	phrog_95	integrase	integration and excision
UHGV-2014496_3	UniRef90	UniRef90_A6BEV3	Resolvase, N-terminal domain protein	NA
UHGV-2014496_3	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-2014496_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2014496_3	Pfam	PF07508	Recombinase	Recombinase
UHGV-2014496_3	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2014496_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2014496_3	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-2014496_4	UniRef90	UniRef90_A0A845KIB6	PIN domain-containing protein	NA
UHGV-2014496_4	eggNOG-mapper	397291.C804_05799	NA	NA
UHGV-2014496_4	Structural annotation	PF01850, MF_00265, NF010285, COG5573	NA	NA
UHGV-2014496_5	UniRef90	UniRef90_A0A845KHC4	NA	NA
UHGV-2014496_5	eggNOG-mapper	272123.Anacy_3116	NA	NA
UHGV-2014496_5	Pfam	PF14213	NA	DUF4325
UHGV-2014496_6	PHROG	phrog_3364	NA	unknown function
UHGV-2014496_6	UniRef90	UniRef90_UPI001EDFA2AF	ATP-binding protein	NA
UHGV-2014496_6	eggNOG-mapper	397291.C804_05801	Histidine kinase	NA
UHGV-2014496_6	COG	COG0642	Signal transduction histidine kinase	NA
UHGV-2014496_6	Structural annotation	PF02518, MF_00637, TIGR01925, TIGR00377, COG2172	NA	NA
UHGV-2014496_7	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-2014496_7	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-2014496_7	UniRef90	UniRef90_A0A845KIV2	Type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-2014496_7	eggNOG-mapper	411470.RUMGNA_03915	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-2014496_7	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-2014496_7	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-2014496_7	Structural annotation	PF15919, COG1598	NA	NA
UHGV-2014496_8	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-2014496_8	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2014496_8	UniRef90	UniRef90_A0A845KJ98	Addiction module toxin, HicA family	NA
UHGV-2014496_8	eggNOG-mapper	478749.BRYFOR_07601	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-2014496_8	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-2014496_8	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-2014496_8	Structural annotation	PF07927, COG1724	NA	NA
UHGV-2014496_9	KOfam	K21463	tcaA; membrane-associated protein TcaA	NA
UHGV-2014496_9	UniRef90	UniRef90_A0A173VJ11	Predicted membrane protein	NA
UHGV-2014496_9	eggNOG-mapper	411461.DORFOR_01127	NA	NA
UHGV-2014496_9	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-2014496_10	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-2014496_10	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2014496_10	UniRef90	UniRef90_A0A173VG58	Endonuclease	NA
UHGV-2014496_10	eggNOG-mapper	411462.DORLON_00821	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-2014496_10	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-2014496_10	COG	COG4748	NA	NA
UHGV-2014496_10	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-2014496_11	PHROG	phrog_20886	NA	unknown function
UHGV-2014496_11	UniRef90	UniRef90_UPI000C757FC8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2014496_11	eggNOG-mapper	411462.DORLON_00820	NA	NA
UHGV-2014496_11	Structural annotation	PF06114	NA	NA
UHGV-2014496_12	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2014496_12	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2014496_12	UniRef90	UniRef90_A0A173VG78	Helix-turn-helix domain-containing protein	NA
UHGV-2014496_12	eggNOG-mapper	411462.DORLON_00819	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2014496_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2014496_12	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2014496_12	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-2014496_13	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2014496_13	UniRef90	UniRef90_A0A173VG88	Helix-turn-helix domain	NA
UHGV-2014496_13	eggNOG-mapper	552396.HMPREF0863_02446	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2014496_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2014496_13	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-2014496_14	PHROG	phrog_17486	NA	unknown function
UHGV-2014496_14	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-2014496_17	UniRef90	UniRef90_UPI001F2FF670	CbrC family protein	NA
UHGV-2014496_18	Structural annotation	PF14902	NA	NA
UHGV-2014496_19	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2014496_19	UniRef90	UniRef90_A0A417QG93	NA	NA
UHGV-2014496_19	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-2014496_19	Pfam	PF06378	NA	DUF1071
UHGV-2014496_19	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-2014496_20	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2014496_20	eggNOG-mapper	411490.ANACAC_00804	NA	NA
UHGV-2014496_20	Structural annotation	PF05772, NF007281	NA	NA
UHGV-2014496_21	PHROG	phrog_7566	NA	unknown function
UHGV-2014496_21	UniRef90	UniRef90_UPI001570B64C	phosphoenolpyruvate carboxykinase	NA
UHGV-2014496_21	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-2014496_22	PHROG	phrog_2113	NA	unknown function
UHGV-2014496_22	eggNOG-mapper	1160721.RBI_I00213	NA	NA
UHGV-2014496_22	Structural annotation	PF21715	NA	NA
UHGV-2014496_23	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2014496_23	eggNOG-mapper	1280692.AUJL01000025_gene2095	NA	NA
UHGV-2014496_23	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-2014496_24	PHROG	phrog_15768	NA	unknown function
UHGV-2014496_24	UniRef90	UniRef90_UPI001C1E0E19	GntR family transcriptional regulator	NA
UHGV-2014496_24	eggNOG-mapper	886379.AEWI01000001_gene1766	NA	NA
UHGV-2014496_24	Pfam	PF07848	PaaX-like protein	PaaX
UHGV-2014496_24	Structural annotation	PF10771, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-2014496_25	PHROG	phrog_3253	NA	unknown function
UHGV-2014496_25	UniRef90	UniRef90_A0A355KVS1	Resolvase	NA
UHGV-2014496_25	eggNOG-mapper	411461.DORFOR_00013	NA	NA
UHGV-2014496_26	Structural annotation	PF01917, NF006325	NA	NA
UHGV-2014496_27	PHROG	phrog_15198	NA	unknown function
UHGV-2014496_27	UniRef90	UniRef90_UPI001EE0C335	NA	NA
UHGV-2014496_27	eggNOG-mapper	411462.DORLON_00804	NA	NA
UHGV-2014496_27	Pfam	PF04448	NA	DUF551
UHGV-2014496_27	Structural annotation	PF04448, NF041588	NA	NA
UHGV-2014496_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2014496_30	UniRef90	UniRef90_A0A6L8RVY0	Sigma70_r4 domain-containing protein	NA
UHGV-2014496_30	eggNOG-mapper	411461.DORFOR_00754	sigma factor activity	NA
UHGV-2014496_30	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2014496_30	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2014496_30	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-2014496_31	Structural annotation	PF04381, MF_00194, NF001460, COG2974	NA	NA
UHGV-2014496_32	UniRef90	UniRef90_UPI0015704FD2	NA	NA
UHGV-2014496_32	Pfam	PF09903	NA	DUF2130
UHGV-2014496_32	Structural annotation	PF19363, PF04471, COG1787, COG3355	NA	NA
UHGV-2014496_33	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-2014496_33	UniRef90	UniRef90_UPI001C027893	phage terminase small subunit	NA
UHGV-2014496_33	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-2014496_33	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-2014496_33	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-2014496_33	COG	COG5484	NA	NA
UHGV-2014496_33	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-2014496_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2014496_34	PHROG	phrog_10250	NA	unknown function
UHGV-2014496_34	UniRef90	UniRef90_UPI001C023397	PBSX family phage terminase large subunit	NA
UHGV-2014496_34	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-2014496_34	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2014496_34	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2014496_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-2014496_34	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2014496_35	PHROG	phrog_64	portal protein	head and packaging
UHGV-2014496_35	UniRef90	UniRef90_UPI001A9B67CD	phage portal protein	NA
UHGV-2014496_35	eggNOG-mapper	1232453.BAIF02000011_gene3353	Phage portal protein, SPP1 family	NA
UHGV-2014496_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2014496_35	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-2014496_35	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-2014496_36	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2014496_36	UniRef90	UniRef90_A0A173ZC01	NAD+--asparagine ADP-ribosyltransferase	NA
UHGV-2014496_36	eggNOG-mapper	476272.RUMHYD_02847	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-2014496_36	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2014496_36	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2014496_36	COG	COG2369	NA	NA
UHGV-2014496_36	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-2014496_38	PHROG	phrog_1048	NA	unknown function
UHGV-2014496_38	UniRef90	UniRef90_A0A395V4Z5	NA	NA
UHGV-2014496_38	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-2014496_38	Pfam	PF11195	NA	DUF2829
UHGV-2014496_38	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-2014496_38	Structural annotation	PF11195	NA	NA
UHGV-2014496_39	KOfam	K07584	NA	NA
UHGV-2014496_39	PHROG	phrog_4478	peptidase	other
UHGV-2014496_39	UniRef90	UniRef90_UPI00156DEF22	ribosomal-processing cysteine protease Prp	NA
UHGV-2014496_39	eggNOG-mapper	1232453.BAIF02000011_gene3357	Cysteine protease Prp	NA
UHGV-2014496_39	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-2014496_39	COG	COG2868	NA	NA
UHGV-2014496_39	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-2014496_40	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-2014496_40	UniRef90	UniRef90_UPI001D0541EB	NA	NA
UHGV-2014496_40	eggNOG-mapper	1232453.BAIF02000011_gene3358	NA	NA
UHGV-2014496_40	Pfam	PF14265	NA	DUF4355
UHGV-2014496_40	Structural annotation	PF14265	NA	NA
UHGV-2014496_41	PHROG	phrog_544	major head protein	head and packaging
UHGV-2014496_41	UniRef90	UniRef90_A0A173ZE35	S-l_SbsC_C domain-containing protein	NA
UHGV-2014496_41	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-2014496_41	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-2014496_41	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2014496_42	PHROG	phrog_390	Arc-like repressor	transcription regulation
UHGV-2014496_42	UniRef90	UniRef90_UPI00189B7272	Rho termination protein	NA
UHGV-2014496_43	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2014496_43	UniRef90	UniRef90_A0A173ZES1	Phage gp6-like head-tail connector protein	NA
UHGV-2014496_43	eggNOG-mapper	476272.RUMHYD_02856	Phage gp6-like head-tail connector protein	NA
UHGV-2014496_43	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2014496_43	Structural annotation	PF05135	NA	NA
UHGV-2014496_44	PHROG	phrog_348	minor head protein	head and packaging
UHGV-2014496_44	eggNOG-mapper	476272.RUMHYD_02857	NA	NA
UHGV-2014496_44	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2014496_45	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2014496_45	UniRef90	UniRef90_UPI00156D85AA	HK97 gp10 family phage protein	NA
UHGV-2014496_45	eggNOG-mapper	476272.RUMHYD_02858	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2014496_45	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2014496_45	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2014496_45	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-2014496_46	PHROG	phrog_176	tail terminator	connector
UHGV-2014496_46	UniRef90	UniRef90_UPI001D04E689	NA	NA
UHGV-2014496_46	eggNOG-mapper	476272.RUMHYD_02859	NA	NA
UHGV-2014496_46	Structural annotation	PF11367	NA	NA
UHGV-2014496_47	PHROG	phrog_238	major tail protein	tail
UHGV-2014496_47	UniRef90	UniRef90_A0A173YN47	Phage major tail protein, TP901-1 family	NA
UHGV-2014496_47	eggNOG-mapper	1235798.C817_03471	Phage tail tube protein	NA
UHGV-2014496_47	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-2014496_47	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-2014496_47	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2014496_48	PHROG	phrog_183	tail chaperone protein	tail
UHGV-2014496_48	UniRef90	UniRef90_UPI001D067B55	tail assembly chaperone	NA
UHGV-2014496_48	eggNOG-mapper	476272.RUMHYD_02861	Phage tail assembly chaperone protein, TAC	NA
UHGV-2014496_48	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-2014496_48	Structural annotation	PF12363	NA	NA
UHGV-2014496_49	PHROG	phrog_1204	tail protein	tail
UHGV-2014496_49	UniRef90	UniRef90_UPI001896B0C6	tape measure protein	NA
UHGV-2014496_49	eggNOG-mapper	1232453.BAIF02000011_gene3367	phage tail tape measure protein	NA
UHGV-2014496_49	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2014496_49	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2014496_49	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2014496_49	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2014496_50	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-2014496_50	UniRef90	UniRef90_UPI00156D6BD7	phage tail family protein	NA
UHGV-2014496_50	eggNOG-mapper	1235796.C815_00909	Phage tail protein	NA
UHGV-2014496_50	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2014496_50	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2014496_50	COG	COG4722	Phage-related protein YomH	NA
UHGV-2014496_50	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-2014496_51	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-2014496_51	PHROG	phrog_9478	minor tail protein	tail
UHGV-2014496_51	UniRef90	UniRef90_UPI001C0193FC	phage tail protein	NA
UHGV-2014496_51	eggNOG-mapper	543734.LCABL_13420	cellulase activity	NA
UHGV-2014496_51	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2014496_51	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2014496_51	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2014496_51	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-2014496_51	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2014496_52	eggNOG-mapper	641107.CDLVIII_1197	NA	NA
UHGV-2014496_53	PHROG	phrog_1009	NA	unknown function
UHGV-2014496_53	UniRef90	UniRef90_A0A173RD60	Branched-chain amino acid ABC transporter permease	NA
UHGV-2014496_53	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA