UHGV-2014851

Genome information

Genome length 39,150 bps

CDS count 47

Completeness 99.65% (high-quality)

geNomad score 0.9660

Prediction confidence Confident

Genome information
Genome ID	UHGV-2014851
vOTU ID	vOTU-072299
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029190\|Ga0168711_100075\|provirus_106108_145257
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.65% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9660
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	1
viralVerify prediction	Virus
viralVerify score	24.61
Jumbo phage	No

Genome content
Genome length	39,150 bps
GC content	39.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	87.48%
Average CDS length	732.77 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2014851_1	UniRef90	UniRef90_UPI001F4A9730	VTC domain-containing protein	NA
UHGV-2014851_1	eggNOG-mapper	537007.BLAHAN_06812	NA	NA
UHGV-2014851_1	Pfam	PF09359	VTC domain	VTC
UHGV-2014851_1	COG	COG5036	SPX domain-containing protein involved in vacuolar polyphosphate accumulation	NA
UHGV-2014851_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2014851_2	PHROG	phrog_95	integrase	integration and excision
UHGV-2014851_2	UniRef90	UniRef90_A0A1E3AKN6	DNA-invertase hin	NA
UHGV-2014851_2	eggNOG-mapper	999413.HMPREF1094_02245	Resolvase, N terminal domain	NA
UHGV-2014851_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2014851_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-2014851_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2014851_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2014851_2	Structural annotation	PF07508, NF041201	NA	NA
UHGV-2014851_3	UniRef90	UniRef90_A0A417WBM1	Exonuc_X-T_C domain-containing protein	NA
UHGV-2014851_3	eggNOG-mapper	622312.ROSEINA2194_03500	NA	NA
UHGV-2014851_4	UniRef90	UniRef90_A0A2T3FML3	Plasmid recombination enzyme	NA
UHGV-2014851_4	eggNOG-mapper	903814.ELI_1000	Plasmid recombination enzyme	NA
UHGV-2014851_4	Pfam	PF01076	Plasmid recombination enzyme	Mob_Pre
UHGV-2014851_4	NCBIFam	NF041497.1	MobV family relaxase	NA
UHGV-2014851_4	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2014851_4	Structural annotation	PF01076, NF041497, COG3843	NA	NA
UHGV-2014851_5	PHROG	phrog_32573	NA	unknown function
UHGV-2014851_5	UniRef90	UniRef90_F7K6R3	Cys_rich_VLP domain-containing protein	NA
UHGV-2014851_5	eggNOG-mapper	658086.HMPREF0994_01578	Cysteine-rich VLP	NA
UHGV-2014851_5	Pfam	PF14194	Cysteine-rich VLP	Cys_rich_VLP
UHGV-2014851_5	Structural annotation	PF14194	NA	NA
UHGV-2014851_6	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2014851_6	PHROG	phrog_34939	NA	unknown function
UHGV-2014851_6	UniRef90	UniRef90_R5LWJ1	HTH cro/C1-type domain-containing protein	NA
UHGV-2014851_6	eggNOG-mapper	1235792.C808_03770	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2014851_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2014851_6	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-2014851_6	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-2014851_7	UniRef90	UniRef90_UPI00156EF67F	metallophosphoesterase	NA
UHGV-2014851_7	eggNOG-mapper	573061.Clocel_0829	Calcineurin-like phosphoesterase	NA
UHGV-2014851_7	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-2014851_7	COG	COG1409	3',5'-cyclic AMP phosphodiesterase CpdA	NA
UHGV-2014851_8	KOfam	K06283	spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D	NA
UHGV-2014851_8	PHROG	phrog_11726	sporulation stage III protein D	moron, auxiliary metabolic gene and host takeover
UHGV-2014851_8	UniRef90	UniRef90_A0A1Y3T9B3	Stage III sporulation protein E	NA
UHGV-2014851_8	eggNOG-mapper	537007.BLAHAN_04587	helix-turn-helix, Psq domain	NA
UHGV-2014851_8	Pfam	PF12116	Stage III sporulation protein D	SpoIIID
UHGV-2014851_8	COG	COG1609	DNA-binding transcriptional regulator, LacI/PurR family	NA
UHGV-2014851_9	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-2014851_12	eggNOG-mapper	411470.RUMGNA_03785	NA	NA
UHGV-2014851_13	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2014851_13	PHROG	phrog_7854	endolysin	lysis
UHGV-2014851_13	UniRef90	UniRef90_UPI001C3B2E98	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2014851_13	eggNOG-mapper	1235798.C817_04599	Ami_2	NA
UHGV-2014851_13	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2014851_13	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-2014851_13	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-2014851_14	PHROG	phrog_443	holin	lysis
UHGV-2014851_14	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-2014851_14	eggNOG-mapper	742733.HMPREF9469_01797	Putative lactococcus lactis phage r1t holin	NA
UHGV-2014851_14	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2014851_14	Structural annotation	PF16945	NA	NA
UHGV-2014851_15	UniRef90	UniRef90_A0A3R6SMZ1	CTP synthase	NA
UHGV-2014851_15	eggNOG-mapper	411490.ANACAC_00599	NA	NA
UHGV-2014851_16	PHROG	phrog_2310	NA	unknown function
UHGV-2014851_16	eggNOG-mapper	931276.Cspa_c27110	NA	NA
UHGV-2014851_17	PHROG	phrog_16164	NA	unknown function
UHGV-2014851_17	eggNOG-mapper	411470.RUMGNA_00122	NA	NA
UHGV-2014851_17	Structural annotation	PF10651, NF032891	NA	NA
UHGV-2014851_18	PHROG	phrog_25635	NA	unknown function
UHGV-2014851_18	UniRef90	UniRef90_A0A7K3I4P1	H_lectin domain-containing protein	NA
UHGV-2014851_18	eggNOG-mapper	1280698.AUJS01000007_gene1050	NA	NA
UHGV-2014851_18	Structural annotation	PF18573, PF20747, NF033147	NA	NA
UHGV-2014851_19	PHROG	phrog_538	minor tail protein	tail
UHGV-2014851_19	UniRef90	UniRef90_UPI001E2C8064	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2014851_19	eggNOG-mapper	658655.HMPREF0988_02550	NA	NA
UHGV-2014851_19	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2014851_20	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2014851_20	eggNOG-mapper	411468.CLOSCI_00277	NA	NA
UHGV-2014851_20	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2014851_21	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-2014851_21	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-2014851_21	UniRef90	UniRef90_UPI001D06AE33	phage tail tape measure protein	NA
UHGV-2014851_21	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-2014851_21	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2014851_21	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2014851_21	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2014851_23	UniRef90	UniRef90_A0A316S919	Phage tail protein	NA
UHGV-2014851_23	eggNOG-mapper	1384484.AEQU_1175	NA	NA
UHGV-2014851_23	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-2014851_24	PHROG	phrog_5509	neck protein	connector
UHGV-2014851_24	eggNOG-mapper	1408823.AXUS01000025_gene2627	NA	NA
UHGV-2014851_24	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-2014851_25	Structural annotation	PF05657, COG3167	NA	NA
UHGV-2014851_26	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-2014851_26	eggNOG-mapper	1384484.AEQU_1178	NA	NA
UHGV-2014851_26	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2014851_26	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2014851_27	PHROG	phrog_749	NA	unknown function
UHGV-2014851_27	UniRef90	UniRef90_A0A1I3QJG6	Phage gp6-like head-tail connector protein	NA
UHGV-2014851_27	eggNOG-mapper	1408823.AXUS01000025_gene2624	NA	NA
UHGV-2014851_28	PHROG	phrog_10	major head protein	head and packaging
UHGV-2014851_28	UniRef90	UniRef90_UPI00164AB0C3	phage major capsid protein	NA
UHGV-2014851_28	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-2014851_28	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2014851_28	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2014851_28	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2014851_28	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2014851_29	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2014851_29	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2014851_29	UniRef90	UniRef90_UPI00111E41DA	Clp protease ClpP	NA
UHGV-2014851_29	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-2014851_29	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2014851_29	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2014851_29	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-2014851_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-2014851_30	UniRef90	UniRef90_A0A371ARN5	Phage portal protein	NA
UHGV-2014851_30	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-2014851_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2014851_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2014851_30	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2014851_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2014851_31	UniRef90	UniRef90_UPI00156EA6D8	terminase large subunit	NA
UHGV-2014851_31	eggNOG-mapper	1211817.CCAT010000053_gene2129	Phage Terminase	NA
UHGV-2014851_31	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2014851_31	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2014851_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2014851_31	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2014851_32	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-2014851_32	UniRef90	UniRef90_UPI00156D89BA	P27 family phage terminase small subunit	NA
UHGV-2014851_32	eggNOG-mapper	610130.Closa_0740	NA	NA
UHGV-2014851_32	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2014851_32	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2014851_33	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2014851_33	UniRef90	UniRef90_A0A0R1QFP4	HNH endonuclease domain-containing protein	NA
UHGV-2014851_33	eggNOG-mapper	768710.DesyoDRAFT_1275	HNH nucleases	NA
UHGV-2014851_33	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2014851_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2014851_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2014851_34	UniRef90	UniRef90_A0A396PTA3	NA	NA
UHGV-2014851_34	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-2014851_34	Pfam	PF07374	NA	DUF1492
UHGV-2014851_34	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2014851_34	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-2014851_35	PHROG	phrog_10714	NA	unknown function
UHGV-2014851_35	UniRef90	UniRef90_R6RDV7	DNA polymerase II large subunit	NA
UHGV-2014851_35	eggNOG-mapper	537007.BLAHAN_05460	NA	NA
UHGV-2014851_36	PHROG	phrog_37410	NA	unknown function
UHGV-2014851_36	Structural annotation	PF08169, NF037951, COG1918	NA	NA
UHGV-2014851_37	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2014851_37	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2014851_37	UniRef90	UniRef90_F3AAS1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2014851_37	eggNOG-mapper	1123311.KB904448_gene48	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-2014851_37	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-2014851_37	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2014851_37	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2014851_37	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2014851_37	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-2014851_39	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2014851_39	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2014851_39	UniRef90	UniRef90_F3AAS3	Single-stranded DNA-binding protein	NA
UHGV-2014851_39	eggNOG-mapper	537007.BLAHAN_04317	NA	NA
UHGV-2014851_39	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2014851_39	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2014851_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2014851_39	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2014851_39	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2014851_40	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2014851_40	PHROG	phrog_15077	NA	unknown function
UHGV-2014851_40	UniRef90	UniRef90_UPI0018AA1051	ParB/RepB/Spo0J family partition protein	NA
UHGV-2014851_40	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-2014851_40	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2014851_40	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-2014851_41	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-2014851_41	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2014851_41	UniRef90	UniRef90_A0A2X2UPI1	Soj protein	NA
UHGV-2014851_41	eggNOG-mapper	1235792.C808_00611	AAA domain	NA
UHGV-2014851_41	Pfam	PF13614	AAA domain	AAA_31
UHGV-2014851_41	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-2014851_41	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-2014851_43	KOfam	K03700	recU; recombination protein U	NA
UHGV-2014851_43	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2014851_43	UniRef90	UniRef90_A0A5M8BZN7	Holliday junction resolvase RecU	NA
UHGV-2014851_43	eggNOG-mapper	1211817.CCAT010000012_gene2726	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-2014851_43	Pfam	PF03838	Recombination protein U	RecU
UHGV-2014851_43	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-2014851_43	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-2014851_45	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2014851_45	eggNOG-mapper	97139.C824_06117	NA	NA
UHGV-2014851_45	Structural annotation	PF01446	NA	NA
UHGV-2014851_46	PHROG	phrog_36464	NA	unknown function
UHGV-2014851_46	UniRef90	UniRef90_R6QN85	50S ribosomal protein L11 domain protein	NA
UHGV-2014851_46	eggNOG-mapper	411461.DORFOR_01136	NA	NA
UHGV-2014851_46	Structural annotation	PF09035	NA	NA