UHGV-2015071

Genome information

Genome length 8,878 bps

CDS count 15

Completeness 69.58% (medium-quality)

geNomad score 0.9312

Prediction confidence Confident

Genome information
Genome ID	UHGV-2015071
vOTU ID	vOTU-041450
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029227\|Ga0168687_100491\|provirus_65_8942
BioSample	SAMEA2737668
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.58% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	2
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9312
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.21
Jumbo phage	No

Genome content
Genome length	8,878 bps
GC content	53.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	15
CDS density	89.66%
Average CDS length	535.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2015071_1	UniRef90	UniRef90_A0A3D1LEL8	HTH_38 domain-containing protein	NA
UHGV-2015071_1	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-2015071_2	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2015071_2	UniRef90	UniRef90_A0A6H1MR47	Putative tail component	NA
UHGV-2015071_2	eggNOG-mapper	1123405.AUMM01000017_gene2703	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2015071_2	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2015071_2	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2015071_2	Structural annotation	TIGR01725	NA	NA
UHGV-2015071_6	UniRef90	UniRef90_A0A3D1LEC5	VPS37 C-terminal domain-containing protein	NA
UHGV-2015071_6	eggNOG-mapper	439235.Dalk_2800	NA	NA
UHGV-2015071_6	Structural annotation	NF041728	NA	NA
UHGV-2015071_7	UniRef90	UniRef90_A0A3D1LEV7	Sigma70_r2 domain-containing protein	NA
UHGV-2015071_7	eggNOG-mapper	742738.HMPREF9460_00723	Sigma-70, region 4	NA
UHGV-2015071_7	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-2015071_7	COG	COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	NA
UHGV-2015071_7	Structural annotation	PF07638, MF_00959, NF006147, COG0568	NA	NA
UHGV-2015071_9	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2015071_9	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2015071_9	UniRef90	UniRef90_UPI0018973262	AAA family ATPase	NA
UHGV-2015071_9	eggNOG-mapper	742738.HMPREF9460_00852	Participates in initiation and elongation during chromosome replication	NA
UHGV-2015071_9	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2015071_9	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2015071_9	COG	COG0305	Replicative DNA helicase	NA
UHGV-2015071_9	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2015071_10	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2015071_10	UniRef90	UniRef90_A0A810PZI8	NA	NA
UHGV-2015071_10	eggNOG-mapper	768710.DesyoDRAFT_5236	DnaD domain protein	NA
UHGV-2015071_10	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2015071_10	Structural annotation	PF19808	NA	NA
UHGV-2015071_11	UniRef90	UniRef90_A0A3A8YWT9	DNA-binding protein	NA
UHGV-2015071_11	eggNOG-mapper	877414.ATWA01000139_gene1368	NA	NA
UHGV-2015071_12	UniRef90	UniRef90_UPI00195D7EE2	helix-turn-helix transcriptional regulator	NA
UHGV-2015071_12	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2015071_12	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2015071_12	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2015071_13	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2015071_13	UniRef90	UniRef90_A0A417H7X8	XRE family transcriptional regulator	NA
UHGV-2015071_13	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2015071_14	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-2015071_14	PHROG	phrog_8036	NA	unknown function
UHGV-2015071_14	UniRef90	UniRef90_A0A1Y4LUW1	DNA damage-inducible protein D	NA
UHGV-2015071_14	eggNOG-mapper	1131462.DCF50_p2453	NA	NA
UHGV-2015071_14	AcrCatalog	cluster_17589	NA	NA
UHGV-2015071_14	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-2015071_14	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2015071_14	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-2015071_14	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-2015071_14	Structural annotation	PF09669, NF008573, COG3646	NA	NA
UHGV-2015071_15	KOfam	K14059	int; integrase	NA
UHGV-2015071_15	PHROG	phrog_1	integrase	integration and excision
UHGV-2015071_15	UniRef90	UniRef90_UPI0019598861	site-specific integrase	NA
UHGV-2015071_15	eggNOG-mapper	718252.FP2_06900	Phage integrase, N-terminal SAM-like domain	NA
UHGV-2015071_15	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2015071_15	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2015071_15	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2015071_15	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA