UHGV-2016395

Genome information

Genome length 31,107 bps

CDS count 46

Completeness 79.63% (medium-quality)

geNomad score 0.9730

Prediction confidence Confident

Genome information
Genome ID	UHGV-2016395
vOTU ID	vOTU-015221
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029091\|Ga0169192_100106\|provirus_80885_126690
BioSample	SAMEA2579926
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.63% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9730
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.33
Jumbo phage	No

Genome content
Genome length	31,107 bps
GC content	46.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	92.14%
Average CDS length	629.09 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2016395_1	PHROG	phrog_443	holin	lysis
UHGV-2016395_1	UniRef90	UniRef90_UPI001EE0823A	holin	NA
UHGV-2016395_1	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-2016395_1	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2016395_1	Structural annotation	PF16945	NA	NA
UHGV-2016395_2	PHROG	phrog_937	hemolysin	other
UHGV-2016395_2	eggNOG-mapper	1235790.C805_00093	NA	NA
UHGV-2016395_3	PHROG	phrog_30220	NA	unknown function
UHGV-2016395_3	UniRef90	UniRef90_UPI000A2711C8	phage tail protein	NA
UHGV-2016395_3	eggNOG-mapper	696281.Desru_1098	ATPase involved in DNA repair	NA
UHGV-2016395_3	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-2016395_4	PHROG	phrog_18725	NA	unknown function
UHGV-2016395_4	eggNOG-mapper	1298920.KI911353_gene4838	NA	NA
UHGV-2016395_5	PHROG	phrog_13879	NA	unknown function
UHGV-2016395_5	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-2016395_5	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-2016395_6	PHROG	phrog_1194	NA	unknown function
UHGV-2016395_6	eggNOG-mapper	1298920.KI911353_gene4840	NA	NA
UHGV-2016395_6	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2016395_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2016395_7	UniRef90	UniRef90_A0A174SV65	Phage-like protein	NA
UHGV-2016395_7	eggNOG-mapper	742740.HMPREF9474_03514	tape measure	NA
UHGV-2016395_7	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2016395_7	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2016395_8	PHROG	phrog_8355	NA	unknown function
UHGV-2016395_8	UniRef90	UniRef90_UPI0011579C35	Gp15 family bacteriophage protein	NA
UHGV-2016395_8	eggNOG-mapper	742740.HMPREF9474_03513	NA	NA
UHGV-2016395_8	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2016395_8	Structural annotation	PF06854	NA	NA
UHGV-2016395_9	PHROG	phrog_8300	NA	unknown function
UHGV-2016395_9	eggNOG-mapper	742740.HMPREF9474_03512	NA	NA
UHGV-2016395_9	Structural annotation	PF06854	NA	NA
UHGV-2016395_10	PHROG	phrog_820	major tail protein	tail
UHGV-2016395_10	eggNOG-mapper	742740.HMPREF9474_03511	domain, Protein	NA
UHGV-2016395_10	COG	COG5492	NA	NA
UHGV-2016395_10	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2016395_11	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-2016395_11	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-2016395_11	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-2016395_11	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-2016395_11	Structural annotation	PF12691, COG5003	NA	NA
UHGV-2016395_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2016395_12	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-2016395_13	PHROG	phrog_8710	NA	unknown function
UHGV-2016395_13	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-2016395_13	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-2016395_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2016395_14	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-2016395_15	PHROG	phrog_15682	NA	unknown function
UHGV-2016395_15	eggNOG-mapper	469618.FVAG_01311	NA	NA
UHGV-2016395_16	PHROG	phrog_212	major head protein	head and packaging
UHGV-2016395_16	UniRef90	UniRef90_A0A416Q289	Phage capsid protein	NA
UHGV-2016395_16	eggNOG-mapper	1151292.QEW_2433	NA	NA
UHGV-2016395_16	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-2016395_17	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2016395_17	UniRef90	UniRef90_UPI001D02A5C9	phage scaffolding protein	NA
UHGV-2016395_17	eggNOG-mapper	1151292.QEW_2434	Phage minor structural protein GP20	NA
UHGV-2016395_17	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2016395_17	Structural annotation	PF06810	NA	NA
UHGV-2016395_18	PHROG	phrog_774	NA	unknown function
UHGV-2016395_18	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-2016395_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2016395_20	UniRef90	UniRef90_A0A6L8XUH4	Minor capsid protein	NA
UHGV-2016395_20	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-2016395_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2016395_20	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-2016395_20	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-2016395_20	Structural annotation	PF06152, PF03496, MF_04139, NF040688	NA	NA
UHGV-2016395_22	PHROG	phrog_25639	NA	unknown function
UHGV-2016395_22	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-2016395_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-2016395_23	UniRef90	UniRef90_UPI00115A2EE2	phage portal protein	NA
UHGV-2016395_23	eggNOG-mapper	1122918.KB907248_gene4503	NA	NA
UHGV-2016395_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2016395_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2016395_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2016395_24	UniRef90	UniRef90_UPI001157E18A	terminase	NA
UHGV-2016395_24	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-2016395_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-2016395_24	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2016395_25	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2016395_25	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2016395_25	UniRef90	UniRef90_A0A3R6SWW3	Terminase small subunit	NA
UHGV-2016395_25	eggNOG-mapper	1298920.KI911353_gene4857	Terminase small subunit	NA
UHGV-2016395_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2016395_25	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2016395_25	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2016395_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2016395_26	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-2016395_26	eggNOG-mapper	1304866.K413DRAFT_3028	NA	NA
UHGV-2016395_26	Structural annotation	PF04545	NA	NA
UHGV-2016395_28	eggNOG-mapper	1304866.K413DRAFT_4636	NA	NA
UHGV-2016395_28	Structural annotation	PF17457	NA	NA
UHGV-2016395_31	PHROG	phrog_4572	NA	unknown function
UHGV-2016395_31	eggNOG-mapper	411902.CLOBOL_05688	NA	NA
UHGV-2016395_32	Structural annotation	NF008911	NA	NA
UHGV-2016395_33	eggNOG-mapper	457421.CBFG_03079	NA	NA
UHGV-2016395_33	Pfam	PF20564	NA	DUF6774
UHGV-2016395_34	UniRef90	UniRef90_UPI00159376B6	NA	NA
UHGV-2016395_34	eggNOG-mapper	742733.HMPREF9469_00921	NA	NA
UHGV-2016395_34	Pfam	PF04448	NA	DUF551
UHGV-2016395_34	Structural annotation	NF041588	NA	NA
UHGV-2016395_35	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2016395_35	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2016395_35	UniRef90	UniRef90_UPI0004132B46	site-specific DNA-methyltransferase	NA
UHGV-2016395_35	eggNOG-mapper	411468.CLOSCI_00299	DNA methylase	NA
UHGV-2016395_35	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-2016395_35	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2016395_35	COG	COG0863	DNA modification methylase	NA
UHGV-2016395_35	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-2016395_36	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2016395_36	UniRef90	UniRef90_C0CTA2	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-2016395_36	eggNOG-mapper	33035.JPJF01000123_gene2435	NA	NA
UHGV-2016395_36	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2016395_36	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-2016395_37	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2016395_37	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2016395_37	UniRef90	UniRef90_UPI0015946E19	ATP-binding protein	NA
UHGV-2016395_37	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-2016395_37	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-2016395_37	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2016395_37	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-2016395_38	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2016395_38	UniRef90	UniRef90_A0A2K9P1I8	DnaD domain protein	NA
UHGV-2016395_38	eggNOG-mapper	1139219.I569_00217	Replication initiation and membrane attachment	NA
UHGV-2016395_38	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2016395_38	Structural annotation	PF01978, MF_01819, TIGR01610, COG3355	NA	NA
UHGV-2016395_39	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2016395_39	eggNOG-mapper	742740.HMPREF9474_03491	NA	NA
UHGV-2016395_40	PHROG	phrog_7566	NA	unknown function
UHGV-2016395_40	UniRef90	UniRef90_UPI0015935946	phosphoenolpyruvate carboxykinase	NA
UHGV-2016395_40	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-2016395_41	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2016395_41	eggNOG-mapper	411468.CLOSCI_00314	NA	NA
UHGV-2016395_41	Structural annotation	PF05772, NF007281	NA	NA
UHGV-2016395_42	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2016395_42	PHROG	phrog_95	integrase	integration and excision
UHGV-2016395_42	UniRef90	UniRef90_A0A317RP18	DNA invertase Pin-like site-specific DNA recombinase	NA
UHGV-2016395_42	eggNOG-mapper	537007.BLAHAN_05376	NA	NA
UHGV-2016395_42	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2016395_42	Pfam	PF07508	Recombinase	Recombinase
UHGV-2016395_42	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2016395_42	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2016395_42	Structural annotation	PF00239, PF13408, PF14235, NF041201, COG1961, COG1579	NA	NA
UHGV-2016395_43	eggNOG-mapper	1232443.BAIA02000032_gene1907	NA	NA
UHGV-2016395_43	Pfam	PF21757	NA	DUF6870
UHGV-2016395_43	Structural annotation	PF21757	NA	NA
UHGV-2016395_44	eggNOG-mapper	742735.HMPREF9467_03958	NA	NA
UHGV-2016395_45	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2016395_45	PHROG	phrog_95	integrase	integration and excision
UHGV-2016395_45	UniRef90	UniRef90_A0A1Y4BU38	Resolvase/invertase-type recombinase catalytic domain-containing protein	NA
UHGV-2016395_45	eggNOG-mapper	742735.HMPREF9467_04849	NA	NA
UHGV-2016395_45	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2016395_46	PHROG	phrog_11138	NA	unknown function
UHGV-2016395_46	UniRef90	UniRef90_D4K3J1	DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog	NA
UHGV-2016395_46	eggNOG-mapper	1232443.BAIA02000032_gene1909	NA	NA
UHGV-2016395_46	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-2016395_46	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-2016395_46	Structural annotation	PF08281, MF_00962, TIGR02479, COG1595	NA	NA