UHGV-2016839

Genome information

Genome length 37,403 bps

CDS count 60

Completeness 91.58% (high-quality)

geNomad score 0.9707

Prediction confidence Confident

Genome information
Genome ID	UHGV-2016839
vOTU ID	vOTU-066643
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029134\|Ga0168775_100441\|provirus_13888_51290
BioSample	SAMEA2737756
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.58% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9707
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.8
Jumbo phage	No

Genome content
Genome length	37,403 bps
GC content	29.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	88.78%
Average CDS length	555.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2016839_1	PHROG	phrog_87	metallo-protease	other
UHGV-2016839_1	UniRef90	UniRef90_UPI0018AB1ABD	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2016839_1	eggNOG-mapper	1280692.AUJL01000009_gene2969	IrrE N-terminal-like domain	NA
UHGV-2016839_1	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2016839_1	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2016839_1	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2016839_2	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2016839_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2016839_2	UniRef90	UniRef90_UPI0018AB5F8D	helix-turn-helix transcriptional regulator	NA
UHGV-2016839_2	eggNOG-mapper	1280692.AUJL01000009_gene2970	Helix-turn-helix XRE-family like proteins	NA
UHGV-2016839_2	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2016839_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2016839_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2016839_2	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-2016839_3	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2016839_3	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2016839_3	UniRef90	UniRef90_UPI0018A8C3D6	helix-turn-helix domain-containing protein	NA
UHGV-2016839_3	eggNOG-mapper	86416.Clopa_0552	helix-turn-helix	NA
UHGV-2016839_3	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2016839_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2016839_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2016839_3	Structural annotation	PF01381, NF041677, COG1396	NA	NA
UHGV-2016839_4	PHROG	phrog_7338	NA	unknown function
UHGV-2016839_4	UniRef90	UniRef90_UPI0018AA0A74	helix-turn-helix domain-containing protein	NA
UHGV-2016839_4	eggNOG-mapper	931276.Cspa_c26540	Excisionase from transposon Tn916	NA
UHGV-2016839_4	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2016839_4	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-2016839_4	Structural annotation	PF09035, TIGR01764, COG3311	NA	NA
UHGV-2016839_5	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-2016839_5	UniRef90	UniRef90_A0A174DDH4	Phage regulatory protein, Rha family	NA
UHGV-2016839_5	eggNOG-mapper	536232.CLM_1619	ORF6C domain	NA
UHGV-2016839_5	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-2016839_5	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-2016839_5	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2016839_5	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-2016839_6	eggNOG-mapper	1499684.CCNP01000018_gene705	NA	NA
UHGV-2016839_10	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2016839_10	UniRef90	UniRef90_UPI0009B15C52	DnaD domain protein	NA
UHGV-2016839_10	eggNOG-mapper	1414720.CBYM010000040_gene1625	DnaD domain protein	NA
UHGV-2016839_10	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2016839_10	Structural annotation	PF07261, PF09681, TIGR01446, TIGR01714, COG3935	NA	NA
UHGV-2016839_11	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2016839_11	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2016839_11	UniRef90	UniRef90_UPI001A9BD14A	ATP-binding protein	NA
UHGV-2016839_11	eggNOG-mapper	1391647.AVSV01000022_gene2532	PFAM IstB-like ATP binding protein	NA
UHGV-2016839_11	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-2016839_11	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2016839_11	Structural annotation	PF01695, MF_01919, NF005378, COG1484	NA	NA
UHGV-2016839_12	PHROG	phrog_803	host nuclease inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-2016839_12	eggNOG-mapper	999411.HMPREF1092_03241	NA	NA
UHGV-2016839_15	PHROG	phrog_14328	NA	unknown function
UHGV-2016839_16	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2016839_16	UniRef90	UniRef90_UPI0018A9BB32	aminotransferase V	NA
UHGV-2016839_16	eggNOG-mapper	1345695.CLSA_c30150	NA	NA
UHGV-2016839_16	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2016839_16	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2016839_16	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-2016839_18	eggNOG-mapper	999411.HMPREF1092_03351	NA	NA
UHGV-2016839_22	Structural annotation	PF13719	NA	NA
UHGV-2016839_23	PHROG	phrog_1672	NA	unknown function
UHGV-2016839_23	UniRef90	UniRef90_A0A3P6KCP8	NA	NA
UHGV-2016839_23	eggNOG-mapper	632245.CLP_2710	NA	NA
UHGV-2016839_24	KOfam	K09777	remA; extracellular matrix regulatory protein A	NA
UHGV-2016839_24	UniRef90	UniRef90_UPI0010547F1E	NA	NA
UHGV-2016839_24	eggNOG-mapper	1444310.JANV01000086_gene201	Belongs to the UPF0296 family	NA
UHGV-2016839_24	Pfam	PF04025	Extracellular matrix regulatory protein A-like	RemA-like
UHGV-2016839_24	NCBIFam	NF003315.0	hypothetical protein	NA
UHGV-2016839_24	COG	COG2052	NA	NA
UHGV-2016839_24	Structural annotation	PF04025, MF_01503, NF003315, COG2052	NA	NA
UHGV-2016839_25	PHROG	phrog_9628	NA	unknown function
UHGV-2016839_25	UniRef90	UniRef90_UPI001C8CCE1F	DNA-binding response regulator	NA
UHGV-2016839_25	eggNOG-mapper	1414720.CBYM010000001_gene690	NA	NA
UHGV-2016839_25	Structural annotation	PF06056, COG2771	NA	NA
UHGV-2016839_27	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2016839_27	PHROG	phrog_216	integrase	integration and excision
UHGV-2016839_27	UniRef90	UniRef90_A0A1C6HZT4	Site-specific tyrosine recombinase XerC	NA
UHGV-2016839_27	eggNOG-mapper	1294142.CINTURNW_1679	Phage integrase family	NA
UHGV-2016839_27	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2016839_27	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2016839_27	Structural annotation	PF00589, MF_01807, NF040815, COG4974	NA	NA
UHGV-2016839_28	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-2016839_28	UniRef90	UniRef90_UPI00115A2089	phage terminase small subunit	NA
UHGV-2016839_28	eggNOG-mapper	1211817.CCAT010000003_gene242	DNA packaging	NA
UHGV-2016839_28	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-2016839_28	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-2016839_28	COG	COG5484	NA	NA
UHGV-2016839_28	Structural annotation	NF040601, COG5484	NA	NA
UHGV-2016839_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2016839_29	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-2016839_29	UniRef90	UniRef90_A0A381IS45	Terminase large subunit	NA
UHGV-2016839_29	eggNOG-mapper	1395513.P343_07995	Phage terminase large subunit	NA
UHGV-2016839_29	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2016839_29	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-2016839_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2016839_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-2016839_29	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2016839_30	PHROG	phrog_64	portal protein	head and packaging
UHGV-2016839_30	UniRef90	UniRef90_UPI0018AA41B6	phage portal protein	NA
UHGV-2016839_30	eggNOG-mapper	1280692.AUJL01000025_gene2083	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2016839_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2016839_30	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-2016839_30	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-2016839_32	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2016839_32	UniRef90	UniRef90_A0A1C6HZ48	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-2016839_32	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-2016839_32	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2016839_32	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2016839_32	COG	COG2369	NA	NA
UHGV-2016839_32	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-2016839_33	PHROG	phrog_2546	NA	unknown function
UHGV-2016839_33	UniRef90	UniRef90_UPI0018AC6E52	TM2 domain-containing protein	NA
UHGV-2016839_33	eggNOG-mapper	1280689.AUJC01000003_gene973	NA	NA
UHGV-2016839_33	Pfam	PF05154	TM2 domain	TM2
UHGV-2016839_33	Structural annotation	PF05154, PF02701, COG3478, COG2314	NA	NA
UHGV-2016839_34	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2016839_34	UniRef90	UniRef90_UPI001F3ECC8A	NA	NA
UHGV-2016839_34	eggNOG-mapper	1415774.U728_1667	NA	NA
UHGV-2016839_34	Pfam	PF14359	NA	DUF4406
UHGV-2016839_34	Structural annotation	PF14359	NA	NA
UHGV-2016839_35	PHROG	phrog_918	NA	unknown function
UHGV-2016839_35	UniRef90	UniRef90_UPI0005DA7338	NA	NA
UHGV-2016839_35	eggNOG-mapper	1499683.CCFF01000014_gene3910	NA	NA
UHGV-2016839_35	Pfam	PF19791	NA	DUF6275
UHGV-2016839_35	Structural annotation	PF19791	NA	NA
UHGV-2016839_36	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-2016839_36	UniRef90	UniRef90_UPI0018AA404B	NA	NA
UHGV-2016839_36	eggNOG-mapper	1280689.AUJC01000003_gene966	NA	NA
UHGV-2016839_36	Pfam	PF14265	NA	DUF4355
UHGV-2016839_36	Structural annotation	PF14265	NA	NA
UHGV-2016839_37	PHROG	phrog_422	major head protein	head and packaging
UHGV-2016839_37	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-2016839_37	eggNOG-mapper	679192.HMPREF9013_1301	NA	NA
UHGV-2016839_37	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2016839_38	PHROG	phrog_2724	NA	unknown function
UHGV-2016839_38	UniRef90	UniRef90_UPI0018A967B3	Rho termination factor N-terminal domain-containing protein	NA
UHGV-2016839_38	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-2016839_39	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2016839_39	UniRef90	UniRef90_UPI0018A97850	phage head-tail connector protein	NA
UHGV-2016839_39	eggNOG-mapper	1294142.CINTURNW_1692	Phage gp6-like head-tail connector protein	NA
UHGV-2016839_39	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2016839_39	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2016839_40	PHROG	phrog_2168	NA	unknown function
UHGV-2016839_40	eggNOG-mapper	1280689.AUJC01000003_gene969	NA	NA
UHGV-2016839_40	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2016839_41	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2016839_41	UniRef90	UniRef90_A0A1C6I123	Phage protein, HK97 gp10 family	NA
UHGV-2016839_41	eggNOG-mapper	1211844.CBLM010000016_gene1487	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2016839_41	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2016839_41	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2016839_41	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2016839_42	PHROG	phrog_78	tail terminator	connector
UHGV-2016839_42	eggNOG-mapper	1235800.C819_00480	NA	NA
UHGV-2016839_42	Structural annotation	PF05657	NA	NA
UHGV-2016839_43	PHROG	phrog_158	major tail protein	tail
UHGV-2016839_43	UniRef90	UniRef90_A0A1C6HZK6	Phage tail protein	NA
UHGV-2016839_43	eggNOG-mapper	1499683.CCFF01000014_gene3903	Phage tail tube protein, TTP	NA
UHGV-2016839_43	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-2016839_43	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-2016839_44	PHROG	phrog_183	tail chaperone protein	tail
UHGV-2016839_44	UniRef90	UniRef90_UPI0018A90CCC	NA	NA
UHGV-2016839_44	eggNOG-mapper	1499683.CCFF01000017_gene2925	NA	NA
UHGV-2016839_44	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-2016839_44	Structural annotation	PF19591	NA	NA
UHGV-2016839_45	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2016839_45	UniRef90	UniRef90_A0A1C6I104	Phage-related protein	NA
UHGV-2016839_45	eggNOG-mapper	1499683.CCFF01000014_gene3900	phage tail tape measure protein	NA
UHGV-2016839_45	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-2016839_45	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2016839_46	PHROG	phrog_1194	NA	unknown function
UHGV-2016839_46	eggNOG-mapper	1280692.AUJL01000027_gene2149	NA	NA
UHGV-2016839_46	Pfam	PF20458	NA	DUF6711
UHGV-2016839_46	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2016839_47	PHROG	phrog_6616	tail protein	tail
UHGV-2016839_47	UniRef90	UniRef90_UPI00137A3D37	gp58-like family protein	NA
UHGV-2016839_47	eggNOG-mapper	1414720.CBYM010000002_gene560	Phage minor structural protein	NA
UHGV-2016839_47	COG	COG4926	Phage-related protein	NA
UHGV-2016839_48	PHROG	phrog_18444	NA	unknown function
UHGV-2016839_48	eggNOG-mapper	1294142.CINTURNW_1043	NA	NA
UHGV-2016839_49	PHROG	phrog_23208	virion structural protein	head and packaging
UHGV-2016839_49	UniRef90	UniRef90_UPI0013E3D1CA	NA	NA
UHGV-2016839_49	eggNOG-mapper	545697.HMPREF0216_02867	domain, Protein	NA
UHGV-2016839_49	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-2016839_49	Structural annotation	PF10651, PF01105	NA	NA
UHGV-2016839_50	PHROG	phrog_18591	NA	unknown function
UHGV-2016839_50	eggNOG-mapper	760568.Desku_2093	NA	NA
UHGV-2016839_52	PHROG	phrog_1863	NA	unknown function
UHGV-2016839_52	eggNOG-mapper	1414720.CBYM010000001_gene713	NA	NA
UHGV-2016839_53	UniRef90	UniRef90_UPI0018A9B2DB	holin	NA
UHGV-2016839_53	eggNOG-mapper	1041504.RATSFB_0394	COG5546 Small integral membrane protein	NA
UHGV-2016839_53	COG	COG5546	NA	NA
UHGV-2016839_54	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2016839_54	PHROG	phrog_435	endolysin	lysis
UHGV-2016839_54	UniRef90	UniRef90_A0A174HNM7	Peptidoglycan hydrolase	NA
UHGV-2016839_54	eggNOG-mapper	1414720.CBYM010000001_gene715	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2016839_54	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2016839_54	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2016839_54	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2016839_54	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, NF038080, COG0860, COG3409	NA	NA
UHGV-2016839_55	PHROG	phrog_33472	NA	unknown function
UHGV-2016839_56	PHROG	phrog_2655	excisionase	integration and excision
UHGV-2016839_56	UniRef90	UniRef90_UPI0018AA8BA8	helix-turn-helix domain-containing protein	NA
UHGV-2016839_56	eggNOG-mapper	398512.JQKC01000005_gene5483	NA	NA
UHGV-2016839_56	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-2016839_57	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-2016839_57	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-2016839_57	UniRef90	UniRef90_UPI001C8CA2A8	ParM/StbA family protein	NA
UHGV-2016839_57	eggNOG-mapper	1033737.CAEV01000075_gene568	StbA protein	NA
UHGV-2016839_57	Pfam	PF17989	Actin like proteins N terminal domain	ALP_N
UHGV-2016839_57	COG	COG0849	Cell division ATPase FtsA	NA
UHGV-2016839_57	Structural annotation	PF06723, MF_02207, NF010498, COG1077	NA	NA
UHGV-2016839_58	UniRef90	UniRef90_UPI001C8C7F86	circadian clock-controlled protein	NA
UHGV-2016839_59	UniRef90	UniRef90_UPI0018AC6FBA	ribbon-helix-helix protein, CopG family	NA
UHGV-2016839_59	eggNOG-mapper	1196322.A370_01996	NA	NA