UHGV-2017325

Genome information

Genome length 40,102 bps

CDS count 46

Completeness 99.84% (high-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-2017325
vOTU ID	vOTU-067480
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029167\|Ga0120260_100037\|provirus_101206_141307
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.84% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.26
Jumbo phage	No

Genome content
Genome length	40,102 bps
GC content	42.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	94.53%
Average CDS length	828.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2017325_2	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-2017325_2	PHROG	phrog_894	endolysin	lysis
UHGV-2017325_2	UniRef90	UniRef90_E1LBK8	Peptidase M15	NA
UHGV-2017325_2	eggNOG-mapper	696369.KI912183_gene1840	Peptidase M15A	NA
UHGV-2017325_2	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-2017325_2	COG	COG3108	NA	NA
UHGV-2017325_2	Structural annotation	PF05951, COG3108	NA	NA
UHGV-2017325_3	PHROG	phrog_199	holin	lysis
UHGV-2017325_3	UniRef90	UniRef90_X8H951	Holin family protein	NA
UHGV-2017325_3	eggNOG-mapper	883156.HMPREF9282_01264	Bacteriophage holin family	NA
UHGV-2017325_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2017325_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2017325_4	PHROG	phrog_22483	NA	unknown function
UHGV-2017325_4	UniRef90	UniRef90_A0A563DAK6	Lysyl-tRNA synthetase	NA
UHGV-2017325_4	eggNOG-mapper	1128111.HMPREF0870_01752	NA	NA
UHGV-2017325_4	Structural annotation	PF17936, COG2372	NA	NA
UHGV-2017325_5	PHROG	phrog_1084	NA	unknown function
UHGV-2017325_5	Structural annotation	PF17813, NF038186	NA	NA
UHGV-2017325_6	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-2017325_6	UniRef90	UniRef90_A0A2S7YYZ8	Fibronectin type-III domain-containing protein	NA
UHGV-2017325_6	eggNOG-mapper	1123489.AUAN01000010_gene347	cellulase activity	NA
UHGV-2017325_6	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-2017325_6	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-2017325_6	COG	COG1511	NA	NA
UHGV-2017325_6	Structural annotation	PF13550, PF16383, PF00041, PF17936, PF14109, MF_04116, NF040662, NF033506, COG4733	NA	NA
UHGV-2017325_7	PHROG	phrog_329	minor tail protein	tail
UHGV-2017325_7	UniRef90	UniRef90_A0A2S7YYZ6	NlpC/P60 domain-containing protein	NA
UHGV-2017325_7	eggNOG-mapper	1128111.HMPREF0870_01757	cysteine-type peptidase activity	NA
UHGV-2017325_7	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-2017325_7	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2017325_7	Structural annotation	PF00877, NF008096, COG3234	NA	NA
UHGV-2017325_8	PHROG	phrog_18	minor tail protein	tail
UHGV-2017325_8	UniRef90	UniRef90_A0A380N670	Phage minor tail protein L	NA
UHGV-2017325_8	eggNOG-mapper	1128111.HMPREF0870_01758	Phage minor tail protein L	NA
UHGV-2017325_8	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-2017325_8	COG	COG4672	Phage tail protein	NA
UHGV-2017325_8	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-2017325_9	PHROG	phrog_22443	NA	unknown function
UHGV-2017325_9	UniRef90	UniRef90_A0A380N6K7	Phage-related minor tail protein	NA
UHGV-2017325_9	eggNOG-mapper	1128111.HMPREF0870_01760	Putative exonuclease SbcCD, C subunit	NA
UHGV-2017325_9	COG	COG4913	NA	NA
UHGV-2017325_9	Structural annotation	PF20155, PF06120, TIGR02338, TIGR01541, COG5281	NA	NA
UHGV-2017325_10	PHROG	phrog_23549	NA	unknown function
UHGV-2017325_10	UniRef90	UniRef90_F5KZN6	Conserved domain protein	NA
UHGV-2017325_11	PHROG	phrog_27248	NA	unknown function
UHGV-2017325_12	PHROG	phrog_290	minor tail protein	tail
UHGV-2017325_12	UniRef90	UniRef90_UPI001E4C5382	phage tail tube protein	NA
UHGV-2017325_12	eggNOG-mapper	1128111.HMPREF0870_01763	NA	NA
UHGV-2017325_12	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-2017325_12	Structural annotation	PF18906, TIGR02241, TIGR02126, COG5437, COG3498	NA	NA
UHGV-2017325_13	PHROG	phrog_17431	NA	unknown function
UHGV-2017325_13	eggNOG-mapper	1128111.HMPREF0870_01764	NA	NA
UHGV-2017325_13	Structural annotation	PF20765, COG5003	NA	NA
UHGV-2017325_14	UniRef90	UniRef90_F5KZN2	Conserved domain protein	NA
UHGV-2017325_14	eggNOG-mapper	1128111.HMPREF0870_01765	NA	NA
UHGV-2017325_14	Structural annotation	PF05069, TIGR01725	NA	NA
UHGV-2017325_15	PHROG	phrog_27032	NA	unknown function
UHGV-2017325_15	Structural annotation	PF05354, TIGR01563, COG5614	NA	NA
UHGV-2017325_16	PHROG	phrog_122	head decoration	head and packaging
UHGV-2017325_16	UniRef90	UniRef90_A0A443JDB0	NA	NA
UHGV-2017325_16	eggNOG-mapper	1005058.UMN179_02397	NA	NA
UHGV-2017325_16	Pfam	PF09956	NA	DUF2190
UHGV-2017325_16	COG	COG5471	Predicted phage recombinase, RecA/RadA family	NA
UHGV-2017325_16	Structural annotation	PF09956, COG5471	NA	NA
UHGV-2017325_17	KOfam	K06904	NA	NA
UHGV-2017325_17	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-2017325_17	UniRef90	UniRef90_F5KZM9	Caudovirus prohead protease	NA
UHGV-2017325_17	eggNOG-mapper	1128111.HMPREF0870_01768	Caudovirus prohead protease	NA
UHGV-2017325_17	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2017325_17	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-2017325_17	COG	COG3087	Cell division protein FtsN	NA
UHGV-2017325_17	Structural annotation	PF19821, PF04586, MF_04119, TIGR04387, TIGR01543, COG3740, COG4653	NA	NA
UHGV-2017325_18	PHROG	phrog_21	portal protein	head and packaging
UHGV-2017325_18	UniRef90	UniRef90_F5KZM8	Phage portal protein, lambda family	NA
UHGV-2017325_18	eggNOG-mapper	1128111.HMPREF0870_01769	Phage portal protein, lambda family	NA
UHGV-2017325_18	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-2017325_18	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-2017325_18	COG	COG5511	Phage capsid protein	NA
UHGV-2017325_18	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-2017325_19	PHROG	phrog_20307	NA	unknown function
UHGV-2017325_19	UniRef90	UniRef90_F5KZM7	Conserved domain protein	NA
UHGV-2017325_19	Structural annotation	PF19645, COG1382	NA	NA
UHGV-2017325_20	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-2017325_20	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-2017325_20	UniRef90	UniRef90_E1LBM6	Phage terminase large subunit (GpA)	NA
UHGV-2017325_20	eggNOG-mapper	1128111.HMPREF0870_01771	Phage terminase large subunit (GpA)	NA
UHGV-2017325_20	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-2017325_20	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-2017325_20	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-2017325_20	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-2017325_21	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-2017325_21	eggNOG-mapper	1128111.HMPREF0870_01772	transposase activity	NA
UHGV-2017325_21	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-2017325_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2017325_22	UniRef90	UniRef90_U7UBY9	PF07374 family protein	NA
UHGV-2017325_22	eggNOG-mapper	1111454.HMPREF1250_0009	NA	NA
UHGV-2017325_22	Pfam	PF07374	NA	DUF1492
UHGV-2017325_22	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-2017325_23	Structural annotation	PF18895, NF009243	NA	NA
UHGV-2017325_25	PHROG	phrog_236	nucleotide kinase	other
UHGV-2017325_25	UniRef90	UniRef90_UPI00098A44D4	NA	NA
UHGV-2017325_25	eggNOG-mapper	546273.VEIDISOL_00707	NA	NA
UHGV-2017325_25	Pfam	PF11753	NA	DUF3310
UHGV-2017325_25	Structural annotation	PF11753	NA	NA
UHGV-2017325_26	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-2017325_26	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2017325_26	UniRef90	UniRef90_A0A2S7YZ18	DEAD/DEAH box helicase	NA
UHGV-2017325_26	eggNOG-mapper	706434.HMPREF9429_00390	SNF2 family N-terminal domain protein	NA
UHGV-2017325_26	PADLOC	DpdE_00010	DpdE	DPD
UHGV-2017325_26	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2017325_26	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2017325_26	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2017325_26	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-2017325_27	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2017325_27	UniRef90	UniRef90_A0A2S7YZ17	VRR-NUC domain-containing protein	NA
UHGV-2017325_27	eggNOG-mapper	706434.HMPREF9429_00391	VRR_NUC	NA
UHGV-2017325_27	Structural annotation	PF01974, MF_01490, NF011269	NA	NA
UHGV-2017325_28	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2017325_28	UniRef90	UniRef90_A0A2S7YZ26	Virulence-associated protein E	NA
UHGV-2017325_28	eggNOG-mapper	706434.HMPREF9429_00392	Virulence-associated protein E	NA
UHGV-2017325_28	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-2017325_28	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-2017325_28	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-2017325_29	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-2017325_29	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2017325_29	UniRef90	UniRef90_A0A2S7YZ14	POLAc domain-containing protein	NA
UHGV-2017325_29	eggNOG-mapper	1128111.HMPREF0870_01780	DNA polymerase	NA
UHGV-2017325_29	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-2017325_29	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-2017325_29	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-2017325_30	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2017325_30	UniRef90	UniRef90_A0A2S7YZ12	NA	NA
UHGV-2017325_30	eggNOG-mapper	706434.HMPREF9429_00394	NA	NA
UHGV-2017325_30	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-2017325_30	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-2017325_31	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2017325_31	UniRef90	UniRef90_A0A2S7YZ00	NA	NA
UHGV-2017325_31	eggNOG-mapper	706434.HMPREF9429_00395	NA	NA
UHGV-2017325_31	Pfam	PF10926	NA	DUF2800
UHGV-2017325_31	COG	COG2887	RecB family exonuclease	NA
UHGV-2017325_31	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2017325_32	PHROG	phrog_18562	NA	unknown function
UHGV-2017325_32	eggNOG-mapper	592028.GCWU000321_01361	NA	NA
UHGV-2017325_33	KOfam	K24451	zim; modification methylase	NA
UHGV-2017325_33	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2017325_33	UniRef90	UniRef90_A0A2S7YZ09	Methyltransferase	NA
UHGV-2017325_33	eggNOG-mapper	1111454.HMPREF1250_1036	DNA methylase	NA
UHGV-2017325_33	PADLOC	MTase_II_00139	Type II methyltransferase	RM
UHGV-2017325_33	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2017325_33	COG	COG0863	DNA modification methylase	NA
UHGV-2017325_33	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-2017325_34	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2017325_34	UniRef90	UniRef90_UPI001D073C21	NA	NA
UHGV-2017325_34	eggNOG-mapper	883156.HMPREF9282_01229	NA	NA
UHGV-2017325_34	Pfam	PF14359	NA	DUF4406
UHGV-2017325_34	Structural annotation	PF14359	NA	NA
UHGV-2017325_35	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-2017325_35	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2017325_35	UniRef90	UniRef90_A0A2S7YZ25	Helicase	NA
UHGV-2017325_35	eggNOG-mapper	592028.GCWU000321_01359	DEAD-like helicases superfamily	NA
UHGV-2017325_35	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2017325_35	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2017325_35	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2017325_35	Structural annotation	PF18766, PF16203, MF_01821, TIGR04095, COG0553	NA	NA
UHGV-2017325_36	PHROG	phrog_3489	NA	unknown function
UHGV-2017325_36	Structural annotation	PF19157	NA	NA
UHGV-2017325_38	PHROG	phrog_30876	NA	unknown function
UHGV-2017325_38	UniRef90	UniRef90_F5KZK9	Conserved domain protein	NA
UHGV-2017325_39	PHROG	phrog_29542	NA	unknown function
UHGV-2017325_40	PHROG	phrog_6058	NA	unknown function
UHGV-2017325_40	Structural annotation	PF09035, NF033787	NA	NA
UHGV-2017325_41	PHROG	phrog_633	transcriptional regulator	transcription regulation
UHGV-2017325_41	UniRef90	UniRef90_X8HX74	Winged helix-turn-helix DNA-binding protein	NA
UHGV-2017325_41	eggNOG-mapper	1401067.HMPREF0872_06890	NA	NA
UHGV-2017325_41	Structural annotation	PF04703, MF_00732, NF033788, COG2345	NA	NA
UHGV-2017325_42	UniRef90	UniRef90_A0A811GK96	HTH cro/C1-type domain-containing protein	NA
UHGV-2017325_42	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2017325_42	Structural annotation	PF13443, MF_00535, TIGR03070, COG1813	NA	NA
UHGV-2017325_43	UniRef90	UniRef90_A0A7X7R2M0	NA	NA
UHGV-2017325_43	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-2017325_43	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-2017325_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2017325_44	UniRef90	UniRef90_UPI001F49B17B	helix-turn-helix domain-containing protein	NA
UHGV-2017325_44	eggNOG-mapper	479436.Vpar_0382	Helix-turn-helix domain protein	NA
UHGV-2017325_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2017325_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2017325_44	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-2017325_45	eggNOG-mapper	861450.HMPREF0080_02019	NA	NA
UHGV-2017325_46	KOfam	K14059	int; integrase	NA
UHGV-2017325_46	PHROG	phrog_1	integrase	integration and excision
UHGV-2017325_46	UniRef90	UniRef90_A0A096CR61	Tyr recombinase domain-containing protein	NA
UHGV-2017325_46	eggNOG-mapper	1401067.HMPREF0872_03560	Belongs to the 'phage' integrase family	NA
UHGV-2017325_46	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-2017325_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2017325_46	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2017325_46	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA