UHGV-2018266

Genome information

Genome length 35,624 bps

CDS count 58

Completeness 99.90% (high-quality)

geNomad score 0.9600

Prediction confidence Confident

Genome information
Genome ID	UHGV-2018266
vOTU ID	vOTU-008677
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029138\|Ga0168728_100022\|provirus_44848_80471
BioSample	SAMEA2737709
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9600
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.19
Jumbo phage	No

Genome content
Genome length	35,624 bps
GC content	31.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	90.79%
Average CDS length	560.90 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2018266_1	eggNOG-mapper	742766.HMPREF9455_00521	NA	NA
UHGV-2018266_1	Pfam	PF20293	ABC-three component (ABC-3C) system Middle Component 6	MC6
UHGV-2018266_2	eggNOG-mapper	742740.HMPREF9474_01190	NA	NA
UHGV-2018266_2	Pfam	PF20275	C-terminal domain 10 of the ABC-three component (ABC-3C) systems	CTD10
UHGV-2018266_4	UniRef90	UniRef90_A0A810PR37	Abi_C domain-containing protein	NA
UHGV-2018266_4	eggNOG-mapper	484770.UFO1_4626	Abortive infection C-terminus	NA
UHGV-2018266_4	PADLOC	AbiJ	AbiJ	Abi
UHGV-2018266_4	Pfam	PF14355	Abortive infection C-terminus	Abi_C
UHGV-2018266_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2018266_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2018266_5	UniRef90	UniRef90_UPI001D0627D7	helix-turn-helix transcriptional regulator	NA
UHGV-2018266_5	eggNOG-mapper	927704.SELR_11030	Helix-turn-helix XRE-family like proteins	NA
UHGV-2018266_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2018266_5	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2018266_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2018266_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2018266_6	UniRef90	UniRef90_UPI000687A369	helix-turn-helix domain-containing protein	NA
UHGV-2018266_6	eggNOG-mapper	272563.CD630_09071	sequence-specific DNA binding	NA
UHGV-2018266_6	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-2018266_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2018266_7	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-2018266_7	UniRef90	UniRef90_UPI001D088355	helix-turn-helix transcriptional regulator	NA
UHGV-2018266_7	eggNOG-mapper	1203606.HMPREF1526_00992	Helix-turn-helix XRE-family like proteins	NA
UHGV-2018266_7	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-2018266_7	Structural annotation	PF13560, MF_00535, TIGR03070, COG1476	NA	NA
UHGV-2018266_10	Structural annotation	PF11614, NF041740, COG5066	NA	NA
UHGV-2018266_13	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-2018266_13	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-2018266_13	UniRef90	UniRef90_UPI001D08DC67	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-2018266_13	eggNOG-mapper	632245.CLP_1613	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-2018266_13	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-2018266_13	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-2018266_13	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-2018266_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2018266_13	Structural annotation	PF09681, TIGR01714, COG3935	NA	NA
UHGV-2018266_14	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2018266_14	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2018266_14	UniRef90	UniRef90_UPI001D079CA7	replicative DNA helicase	NA
UHGV-2018266_14	eggNOG-mapper	1122217.KB899575_gene1971	Participates in initiation and elongation during chromosome replication	NA
UHGV-2018266_14	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2018266_14	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2018266_14	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-2018266_14	COG	COG0305	Replicative DNA helicase	NA
UHGV-2018266_14	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2018266_20	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2018266_20	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2018266_20	UniRef90	UniRef90_UPI000E49F46F	single-stranded DNA-binding protein	NA
UHGV-2018266_20	eggNOG-mapper	1122217.KB899575_gene2011	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-2018266_20	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2018266_20	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2018266_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2018266_20	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2018266_20	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2018266_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2018266_21	UniRef90	UniRef90_UPI00195CFC41	sigma-70 family RNA polymerase sigma factor	NA
UHGV-2018266_21	eggNOG-mapper	1235800.C819_02243	NA	NA
UHGV-2018266_21	Pfam	PF07374	NA	DUF1492
UHGV-2018266_21	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-2018266_22	PHROG	phrog_14664	NA	unknown function
UHGV-2018266_22	eggNOG-mapper	485916.Dtox_0013	NA	NA
UHGV-2018266_22	Structural annotation	PF00644, COG5654	NA	NA
UHGV-2018266_24	PHROG	phrog_21664	NA	unknown function
UHGV-2018266_24	UniRef90	UniRef90_UPI000C7851F2	protein-export chaperone SecB	NA
UHGV-2018266_24	eggNOG-mapper	796940.HMPREF9628_01214	Preprotein translocase subunit SecB	NA
UHGV-2018266_24	Structural annotation	PF02556, MF_00821, NF004391, COG1952	NA	NA
UHGV-2018266_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2018266_27	Structural annotation	PF11570, NF038178, COG1842	NA	NA
UHGV-2018266_28	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2018266_28	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2018266_28	UniRef90	UniRef90_UPI001D09358B	HNH endonuclease	NA
UHGV-2018266_28	eggNOG-mapper	1089548.KI783301_gene3222	HNH endonuclease	NA
UHGV-2018266_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2018266_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2018266_29	PHROG	phrog_1066	NA	unknown function
UHGV-2018266_29	eggNOG-mapper	1232428.CAVO010000003_gene1013	NA	NA
UHGV-2018266_29	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-2018266_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2018266_30	UniRef90	UniRef90_A0A412CHE2	Terminase large subunit	NA
UHGV-2018266_30	eggNOG-mapper	1232428.CAVO010000003_gene1012	Phage Terminase	NA
UHGV-2018266_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2018266_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2018266_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2018266_30	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2018266_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-2018266_31	UniRef90	UniRef90_UPI001D0729FC	phage portal protein	NA
UHGV-2018266_31	eggNOG-mapper	1232428.CAVO010000003_gene1011	Phage portal protein	NA
UHGV-2018266_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2018266_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2018266_31	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2018266_32	KOfam	K06904	NA	NA
UHGV-2018266_32	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2018266_32	UniRef90	UniRef90_A0A412CHQ0	HK97 family phage prohead protease	NA
UHGV-2018266_32	eggNOG-mapper	1232428.CAVO010000003_gene1010	Caudovirus prohead serine protease	NA
UHGV-2018266_32	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2018266_32	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2018266_32	COG	COG3740	Phage head maturation protease	NA
UHGV-2018266_32	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2018266_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-2018266_33	UniRef90	UniRef90_UPI000E53779F	phage major capsid protein	NA
UHGV-2018266_33	eggNOG-mapper	1341151.ASZU01000004_gene260	Phage capsid family	NA
UHGV-2018266_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2018266_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2018266_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2018266_33	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2018266_34	PHROG	phrog_32779	NA	unknown function
UHGV-2018266_34	eggNOG-mapper	1235803.C825_05332	Collagen triple helix repeat (20 copies)	NA
UHGV-2018266_34	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-2018266_35	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2018266_35	UniRef90	UniRef90_A0A412CHC9	Phage gp6-like head-tail connector protein	NA
UHGV-2018266_35	eggNOG-mapper	935948.KE386495_gene1332	Phage gp6-like head-tail connector protein	NA
UHGV-2018266_35	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2018266_35	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2018266_35	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2018266_36	PHROG	phrog_25	head closure Hc1	connector
UHGV-2018266_36	UniRef90	UniRef90_UPI001CD5F5A7	phage head closure protein	NA
UHGV-2018266_36	eggNOG-mapper	1232428.CAVO010000003_gene1007	Phage head-tail joining protein	NA
UHGV-2018266_36	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2018266_36	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2018266_36	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2018266_36	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2018266_37	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2018266_37	UniRef90	UniRef90_A0A412CI38	HK97 gp10 family phage protein	NA
UHGV-2018266_37	eggNOG-mapper	1232428.CAVO010000003_gene1006	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2018266_37	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2018266_37	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-2018266_38	PHROG	phrog_525	NA	unknown function
UHGV-2018266_38	Pfam	PF20765	NA	DUF6838
UHGV-2018266_38	Structural annotation	PF20765, COG5003	NA	NA
UHGV-2018266_39	PHROG	phrog_1480	tail sheath	tail
UHGV-2018266_39	UniRef90	UniRef90_A0A412CH32	Phage tail sheath protein	NA
UHGV-2018266_39	eggNOG-mapper	1232428.CAVO010000003_gene1004	Phage tail sheath C-terminal domain	NA
UHGV-2018266_39	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-2018266_39	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-2018266_39	Structural annotation	PF10758, COG3497	NA	NA
UHGV-2018266_40	PHROG	phrog_365	tail protein	tail
UHGV-2018266_40	UniRef90	UniRef90_A0A412CHD4	Phage portal protein	NA
UHGV-2018266_40	eggNOG-mapper	1232428.CAVO010000003_gene1003	Phage tail tube protein	NA
UHGV-2018266_40	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-2018266_40	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-2018266_41	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-2018266_41	UniRef90	UniRef90_A0A7Y2PM55	XkdN-like protein	NA
UHGV-2018266_41	eggNOG-mapper	1230342.CTM_14413	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-2018266_41	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-2018266_41	Structural annotation	PF08890	NA	NA
UHGV-2018266_42	PHROG	phrog_2722	NA	unknown function
UHGV-2018266_43	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-2018266_43	UniRef90	UniRef90_A0A412CHP1	Phage tail tape measure protein	NA
UHGV-2018266_43	eggNOG-mapper	1232428.CAVO010000003_gene1001	Phage-related minor tail protein	NA
UHGV-2018266_43	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2018266_43	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2018266_43	COG	COG5283	Phage-related tail protein	NA
UHGV-2018266_43	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2018266_44	PHROG	phrog_5184	NA	unknown function
UHGV-2018266_44	UniRef90	UniRef90_A0A0L0W6M8	LysM domain-containing protein	NA
UHGV-2018266_44	eggNOG-mapper	1232428.CAVO010000003_gene1000	LysM domain	NA
UHGV-2018266_44	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-2018266_44	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-2018266_44	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-2018266_45	PHROG	phrog_400	tail protein	tail
UHGV-2018266_45	UniRef90	UniRef90_A0A848BXY8	Lytic transglycosylase domain-containing protein	NA
UHGV-2018266_45	eggNOG-mapper	1232428.CAVO010000003_gene999	NLP P60 protein	NA
UHGV-2018266_45	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2018266_45	Structural annotation	PF14594, PF00877, NF033848, NF008096, COG3500	NA	NA
UHGV-2018266_46	PHROG	phrog_579	NA	unknown function
UHGV-2018266_46	UniRef90	UniRef90_A0A412CHC2	NA	NA
UHGV-2018266_46	eggNOG-mapper	1232428.CAVO010000003_gene998	NA	NA
UHGV-2018266_46	Pfam	PF10844	NA	DUF2577
UHGV-2018266_46	Structural annotation	PF10844	NA	NA
UHGV-2018266_47	PHROG	phrog_1608	tail protein	tail
UHGV-2018266_47	UniRef90	UniRef90_UPI001D09317C	baseplate J/gp47 family protein	NA
UHGV-2018266_47	eggNOG-mapper	568816.Acin_1959	Baseplate J-like protein	NA
UHGV-2018266_47	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-2018266_47	COG	COG3299	NA	NA
UHGV-2018266_47	Structural annotation	PF04865, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-2018266_48	PHROG	phrog_521	tail protein	tail
UHGV-2018266_48	UniRef90	UniRef90_UPI001D081220	YmfQ family protein	NA
UHGV-2018266_48	eggNOG-mapper	568816.Acin_1327	NA	NA
UHGV-2018266_48	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-2018266_48	COG	COG3778	NA	NA
UHGV-2018266_48	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-2018266_49	eggNOG-mapper	1122918.KB907250_gene3597	Phage tail-collar fibre protein	NA
UHGV-2018266_49	Structural annotation	PF12571	NA	NA
UHGV-2018266_50	PHROG	phrog_18608	NA	unknown function
UHGV-2018266_50	eggNOG-mapper	1122917.KB899673_gene660	NA	NA
UHGV-2018266_52	eggNOG-mapper	1200557.JHWV01000001_gene254	NA	NA
UHGV-2018266_54	KOfam	K14059	int; integrase	NA
UHGV-2018266_54	PHROG	phrog_1	integrase	integration and excision
UHGV-2018266_54	UniRef90	UniRef90_UPI000F0C2855	tyrosine-type recombinase/integrase	NA
UHGV-2018266_54	eggNOG-mapper	1123250.KB908441_gene1622	Phage integrase family	NA
UHGV-2018266_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2018266_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2018266_54	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2018266_55	PHROG	phrog_199	holin	lysis
UHGV-2018266_55	UniRef90	UniRef90_A0A378NSW3	Phage-related holin (Lysis protein)	NA
UHGV-2018266_55	eggNOG-mapper	1064535.MELS_1118	Bacteriophage holin family	NA
UHGV-2018266_55	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2018266_55	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2018266_55	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2018266_55	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2018266_56	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2018266_56	PHROG	phrog_822	amidase	lysis
UHGV-2018266_56	UniRef90	UniRef90_UPI0018C4EA8D	peptidoglycan recognition protein family protein	NA
UHGV-2018266_56	eggNOG-mapper	864563.HMPREF9166_0546	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-2018266_56	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2018266_56	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-2018266_56	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-2018266_58	eggNOG-mapper	626939.HMPREF9443_00897	NA	NA