UHGV-2019127

Genome information

Genome length 35,170 bps

CDS count 50

Completeness 85.04% (medium-quality)

geNomad score 0.9469

Prediction confidence Confident

Genome information
Genome ID	UHGV-2019127
vOTU ID	vOTU-017274
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029185\|Ga0168712_100012\|provirus_306884_373321
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.04% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9469
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.89
Jumbo phage	No

Genome content
Genome length	35,170 bps
GC content	40.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	94.31%
Average CDS length	667.44 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2019127_1	KOfam	K08678	UXS1, uxs; UDP-glucuronate decarboxylase [EC:4.1.1.35]	NA
UHGV-2019127_1	PHROG	phrog_540	nucleotide-sugar epimerase	DNA, RNA and nucleotide metabolism
UHGV-2019127_1	UniRef90	UniRef90_A0A2N0UQV5	dTDP-glucose 4,6-dehydratase	NA
UHGV-2019127_1	eggNOG-mapper	877411.JMMA01000002_gene2599	epimerase dehydratase	NA
UHGV-2019127_1	Pfam	PF01370	NAD dependent epimerase/dehydratase family	Epimerase
UHGV-2019127_1	COG	COG0451	Nucleoside-diphosphate-sugar epimerase	NA
UHGV-2019127_1	Structural annotation	PF16363, MF_01166, TIGR01181, COG0451	NA	NA
UHGV-2019127_2	KOfam	K07271	licD; lipopolysaccharide cholinephosphotransferase [EC:2.7.8.-]	NA
UHGV-2019127_2	UniRef90	UniRef90_A0A3D3D7N5	Epimerase domain-containing protein	NA
UHGV-2019127_2	eggNOG-mapper	697329.Rumal_2992	LicD family	NA
UHGV-2019127_2	Pfam	PF01370	NAD dependent epimerase/dehydratase family	Epimerase
UHGV-2019127_2	Pfam	PF04991	LicD family	LicD
UHGV-2019127_2	COG	COG3475	Phosphorylcholine metabolism protein LicD	NA
UHGV-2019127_3	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2019127_3	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2019127_3	UniRef90	UniRef90_A0A412UM21	Methyltransferase	NA
UHGV-2019127_3	eggNOG-mapper	1226322.HMPREF1545_02860	NA	NA
UHGV-2019127_3	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-2019127_3	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2019127_3	COG	COG0863	DNA modification methylase	NA
UHGV-2019127_3	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-2019127_4	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2019127_4	PHROG	phrog_20388	endolysin	lysis
UHGV-2019127_4	UniRef90	UniRef90_A0A374N1L8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2019127_4	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2019127_4	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2019127_4	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2019127_4	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2019127_4	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA
UHGV-2019127_5	PHROG	phrog_322	NA	unknown function
UHGV-2019127_5	UniRef90	UniRef90_UPI000F7ADC69	Gp49 family protein	NA
UHGV-2019127_5	eggNOG-mapper	1445809.A0A0A7AR29_9CAUD	Phage protein (N4 Gp49/phage Sf6 gene 66) family	NA
UHGV-2019127_5	Pfam	PF13876	NA	Phage_gp49_66
UHGV-2019127_5	dbAPIS	APIS043	NA	NA
UHGV-2019127_5	Structural annotation	PF13876	NA	NA
UHGV-2019127_6	PHROG	phrog_881	holin	lysis
UHGV-2019127_6	UniRef90	UniRef90_A0A4Q7P349	Dp-1 family holin	NA
UHGV-2019127_6	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-2019127_6	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-2019127_6	Structural annotation	PF16938	NA	NA
UHGV-2019127_7	UniRef90	UniRef90_A0A374MYZ3	Branched-chain amino acid ABC transporter permease	NA
UHGV-2019127_7	eggNOG-mapper	1007096.BAGW01000032_gene1580	NA	NA
UHGV-2019127_9	UniRef90	UniRef90_A0A374N9Y2	NA	NA
UHGV-2019127_9	Structural annotation	PF08931	NA	NA
UHGV-2019127_10	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-2019127_11	PHROG	phrog_1194	NA	unknown function
UHGV-2019127_11	eggNOG-mapper	397290.C810_05238	NA	NA
UHGV-2019127_11	Pfam	PF20458	NA	DUF6711
UHGV-2019127_11	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2019127_12	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2019127_12	UniRef90	UniRef90_A0A2N0ULX3	Phage-related protein	NA
UHGV-2019127_12	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-2019127_12	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2019127_12	Structural annotation	PF20155, COG3941	NA	NA
UHGV-2019127_14	PHROG	phrog_706	NA	unknown function
UHGV-2019127_14	UniRef90	UniRef90_A0A2N0ULW2	Bacteriophage Gp15 protein	NA
UHGV-2019127_14	eggNOG-mapper	1160721.RBI_II00530	Bacteriophage Gp15 protein	NA
UHGV-2019127_14	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2019127_14	Structural annotation	PF06854	NA	NA
UHGV-2019127_15	PHROG	phrog_11299	NA	unknown function
UHGV-2019127_15	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-2019127_15	Structural annotation	PF10666	NA	NA
UHGV-2019127_16	PHROG	phrog_3099	NA	unknown function
UHGV-2019127_16	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-2019127_16	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2019127_17	PHROG	phrog_3266	tail completion	connector
UHGV-2019127_17	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-2019127_17	Structural annotation	PF20765	NA	NA
UHGV-2019127_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2019127_18	UniRef90	UniRef90_UPI00189BC4F9	minor capsid protein	NA
UHGV-2019127_18	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-2019127_18	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2019127_18	Structural annotation	PF11114	NA	NA
UHGV-2019127_19	PHROG	phrog_3366	NA	unknown function
UHGV-2019127_19	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-2019127_19	Pfam	PF20536	NA	DUF6751
UHGV-2019127_19	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-2019127_20	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2019127_20	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-2019127_20	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-2019127_21	PHROG	phrog_422	major head protein	head and packaging
UHGV-2019127_21	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-2019127_21	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2019127_22	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2019127_22	UniRef90	UniRef90_A0A2N0ULW9	Phage minor structural protein GP20	NA
UHGV-2019127_22	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-2019127_22	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2019127_22	Structural annotation	PF06810	NA	NA
UHGV-2019127_23	PHROG	phrog_2616	NA	unknown function
UHGV-2019127_23	Structural annotation	PF01281	NA	NA
UHGV-2019127_24	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-2019127_24	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-2019127_24	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-2019127_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2019127_27	UniRef90	UniRef90_A0A2N0ULU5	Putative ADP-ribosyltransferase Certhrax	NA
UHGV-2019127_27	eggNOG-mapper	1449050.JNLE01000003_gene3892	Phage minor capsid protein 2	NA
UHGV-2019127_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2019127_27	COG	COG2369	NA	NA
UHGV-2019127_27	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-2019127_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-2019127_28	UniRef90	UniRef90_A0A2N0ULU9	Phage portal protein, putative, A118 family	NA
UHGV-2019127_28	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-2019127_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2019127_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2019127_29	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2019127_29	UniRef90	UniRef90_A0A2N0ULW5	Phage terminase, large subunit, PBSX family	NA
UHGV-2019127_29	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-2019127_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2019127_29	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2019127_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2019127_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-2019127_29	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2019127_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2019127_30	UniRef90	UniRef90_A0A2N0UXQ6	NA	NA
UHGV-2019127_30	eggNOG-mapper	1401067.HMPREF0872_06835	NA	NA
UHGV-2019127_30	Pfam	PF07374	NA	DUF1492
UHGV-2019127_30	Structural annotation	PF07374, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-2019127_31	eggNOG-mapper	1235802.C823_04693	NA	NA
UHGV-2019127_33	PHROG	phrog_5051	NA	unknown function
UHGV-2019127_33	UniRef90	UniRef90_Q9AZ97	Orf197	NA
UHGV-2019127_33	eggNOG-mapper	257314.LJ_1445	NA	NA
UHGV-2019127_34	PHROG	phrog_8684	NA	unknown function
UHGV-2019127_34	UniRef90	UniRef90_A0A374DV44	YopX domain-containing protein	NA
UHGV-2019127_34	eggNOG-mapper	742767.HMPREF9456_02048	YopX protein	NA
UHGV-2019127_34	Pfam	PF09643	YopX protein	YopX
UHGV-2019127_34	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2019127_34	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2019127_36	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2019127_36	UniRef90	UniRef90_UPI001C01CFF8	SANT/Myb domain-containing protein	NA
UHGV-2019127_36	eggNOG-mapper	756499.Desde_1065	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-2019127_36	Pfam	PF00249	Myb-like DNA-binding domain	Myb_DNA-binding
UHGV-2019127_36	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-2019127_36	Structural annotation	PF11112, NF040595	NA	NA
UHGV-2019127_37	PHROG	phrog_824	NA	unknown function
UHGV-2019127_37	UniRef90	UniRef90_A0A374MXE9	VRR-NUC domain-containing protein	NA
UHGV-2019127_37	eggNOG-mapper	1235792.C808_00075	VRR_NUC	NA
UHGV-2019127_37	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2019127_37	Structural annotation	PF08774	NA	NA
UHGV-2019127_38	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2019127_38	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2019127_38	UniRef90	UniRef90_A0A374MYR7	IstB_IS21 domain-containing protein	NA
UHGV-2019127_38	eggNOG-mapper	1507.HMPREF0262_00302	Bacterial dnaA protein	NA
UHGV-2019127_38	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-2019127_38	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2019127_38	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-2019127_39	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2019127_39	UniRef90	UniRef90_A0A374NA85	NA	NA
UHGV-2019127_39	eggNOG-mapper	1235790.C805_00030	NA	NA
UHGV-2019127_39	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-2019127_39	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2019127_39	Structural annotation	PF14297	NA	NA
UHGV-2019127_40	PHROG	phrog_398	NA	unknown function
UHGV-2019127_40	UniRef90	UniRef90_UPI000C7B20DA	putative HNHc nuclease	NA
UHGV-2019127_40	eggNOG-mapper	293826.Amet_2584	Putative HNHc nuclease	NA
UHGV-2019127_40	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-2019127_40	Structural annotation	PF16784	NA	NA
UHGV-2019127_41	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-2019127_41	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-2019127_41	UniRef90	UniRef90_A0A373XYI8	MBL fold metallo-hydrolase	NA
UHGV-2019127_41	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-2019127_41	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-2019127_41	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-2019127_41	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-2019127_42	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2019127_42	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2019127_42	UniRef90	UniRef90_A0A374N9W0	Recombinase	NA
UHGV-2019127_42	eggNOG-mapper	428127.EUBDOL_01509	RecT family	NA
UHGV-2019127_42	Pfam	PF03837	RecT family	RecT
UHGV-2019127_42	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-2019127_42	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2019127_42	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-2019127_43	PHROG	phrog_674	NA	unknown function
UHGV-2019127_43	UniRef90	UniRef90_A0A374N9T8	NA	NA
UHGV-2019127_43	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-2019127_43	Pfam	PF07083	NA	DUF1351
UHGV-2019127_43	Structural annotation	PF07083	NA	NA
UHGV-2019127_44	Structural annotation	PF04570, COG2075	NA	NA
UHGV-2019127_47	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-2019127_49	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-2019127_49	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2019127_49	UniRef90	UniRef90_A0A374N3U7	XRE family transcriptional regulator	NA
UHGV-2019127_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2019127_49	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2019127_49	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2019127_50	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2019127_50	UniRef90	UniRef90_A0A413K8G3	NA	NA
UHGV-2019127_50	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-2019127_50	Structural annotation	COG2250	NA	NA