UHGV-2019135

Genome information

Genome length 43,527 bps

CDS count 70

Completeness 96.28% (high-quality)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-2019135
vOTU ID	vOTU-011409
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029218\|Ga0168718_100068\|provirus_42870_86396
BioSample	SAMEA2737699
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.28% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	76.82
Jumbo phage	No

Genome content
Genome length	43,527 bps
GC content	41.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	92.59%
Average CDS length	582.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2019135_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2019135_1	PHROG	phrog_95	integrase	integration and excision
UHGV-2019135_1	UniRef90	UniRef90_C7GC54	Resolvase, N-terminal domain protein	NA
UHGV-2019135_1	eggNOG-mapper	1256908.HMPREF0373_00206	Resolvase, N terminal domain	NA
UHGV-2019135_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2019135_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-2019135_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2019135_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-2019135_3	Pfam	PF00227	Proteasome subunit	Proteasome
UHGV-2019135_4	KOfam	K07448	mrr; restriction system protein	NA
UHGV-2019135_4	PHROG	phrog_10292	NA	unknown function
UHGV-2019135_4	UniRef90	UniRef90_C7GC51	TM2 domain protein	NA
UHGV-2019135_4	eggNOG-mapper	1235790.C805_00010	Restriction endonuclease	NA
UHGV-2019135_4	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-2019135_4	Pfam	PF05154	TM2 domain	TM2
UHGV-2019135_4	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-2019135_4	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-2019135_5	PHROG	phrog_87	metallo-protease	other
UHGV-2019135_5	UniRef90	UniRef90_A0A3R6AQ03	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2019135_5	eggNOG-mapper	1235790.C805_00591	Zn peptidase	NA
UHGV-2019135_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2019135_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2019135_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2019135_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2019135_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2019135_6	UniRef90	UniRef90_A0A6N3H5I3	HTH-type transcriptional regulator ImmR	NA
UHGV-2019135_6	eggNOG-mapper	1235790.C805_00592	Helix-turn-helix XRE-family like proteins	NA
UHGV-2019135_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2019135_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2019135_6	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-2019135_7	UniRef90	UniRef90_A0A6N3H7Q7	Helix-turn-helix domain protein	NA
UHGV-2019135_7	eggNOG-mapper	861454.HMPREF9099_00333	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2019135_7	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-2019135_18	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2019135_18	eggNOG-mapper	1235800.C819_02258	NA	NA
UHGV-2019135_18	Structural annotation	PF21578, NF041486	NA	NA
UHGV-2019135_19	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-2019135_19	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-2019135_19	UniRef90	UniRef90_A0A3R6GFG3	RNase H type-1 domain-containing protein	NA
UHGV-2019135_19	eggNOG-mapper	526222.Desal_0175	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-2019135_19	Pfam	PF00075	RNase H	RNase_H
UHGV-2019135_19	COG	COG0328	Ribonuclease HI	NA
UHGV-2019135_20	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-2019135_21	PHROG	phrog_4433	NA	unknown function
UHGV-2019135_21	eggNOG-mapper	411902.CLOBOL_05698	regulation of DNA-templated transcription, elongation	NA
UHGV-2019135_21	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-2019135_21	Structural annotation	PF12120, NF000318	NA	NA
UHGV-2019135_22	PHROG	phrog_8470	NA	unknown function
UHGV-2019135_22	UniRef90	UniRef90_A0A1I3G898	PcfJ-like protein	NA
UHGV-2019135_22	eggNOG-mapper	1235799.C818_00266	PcfJ-like protein	NA
UHGV-2019135_22	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2019135_22	Structural annotation	PF14284	NA	NA
UHGV-2019135_23	PHROG	phrog_15077	NA	unknown function
UHGV-2019135_23	UniRef90	UniRef90_A0A174WLY0	NA	NA
UHGV-2019135_23	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-2019135_23	Structural annotation	PF11300, NF038070	NA	NA
UHGV-2019135_24	UniRef90	UniRef90_UPI00164A90AD	HNH endonuclease	NA
UHGV-2019135_24	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-2019135_25	UniRef90	UniRef90_A0A3R6K9V3	NA	NA
UHGV-2019135_25	eggNOG-mapper	622312.ROSEINA2194_04464	NA	NA
UHGV-2019135_25	Pfam	PF14199	NA	DUF4317
UHGV-2019135_25	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA
UHGV-2019135_28	PHROG	phrog_8684	NA	unknown function
UHGV-2019135_28	UniRef90	UniRef90_A0A6N3H7N5	YopX protein	NA
UHGV-2019135_28	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-2019135_28	Pfam	PF09643	YopX protein	YopX
UHGV-2019135_28	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2019135_30	PHROG	phrog_20593	NA	unknown function
UHGV-2019135_31	PHROG	phrog_4292	NA	unknown function
UHGV-2019135_31	eggNOG-mapper	485916.Dtox_4212	NA	NA
UHGV-2019135_33	Structural annotation	PF12802, NF000244	NA	NA
UHGV-2019135_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2019135_34	eggNOG-mapper	1298920.KI911353_gene4858	NA	NA
UHGV-2019135_36	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2019135_36	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-2019135_36	UniRef90	UniRef90_A0A6L6L9H6	Phage portal protein	NA
UHGV-2019135_36	eggNOG-mapper	478749.BRYFOR_07604	terminase, small subunit	NA
UHGV-2019135_36	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-2019135_36	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2019135_36	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2019135_36	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-2019135_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2019135_37	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-2019135_37	UniRef90	UniRef90_A0A6L6L9A4	PBSX family phage terminase large subunit	NA
UHGV-2019135_37	eggNOG-mapper	1395513.P343_07995	Phage terminase large subunit	NA
UHGV-2019135_37	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2019135_37	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-2019135_37	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2019135_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-2019135_37	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2019135_40	PHROG	phrog_64	portal protein	head and packaging
UHGV-2019135_40	UniRef90	UniRef90_A0A6L6XEV1	Phage portal protein	NA
UHGV-2019135_40	eggNOG-mapper	1042156.CXIVA_01850	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2019135_40	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2019135_40	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2019135_41	PHROG	phrog_1233	NA	unknown function
UHGV-2019135_41	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-2019135_41	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-2019135_42	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2019135_42	UniRef90	UniRef90_A0A6L6L8D3	Phage_Mu_F domain-containing protein	NA
UHGV-2019135_42	eggNOG-mapper	742740.HMPREF9474_02356	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-2019135_42	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2019135_42	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2019135_42	COG	COG2369	NA	NA
UHGV-2019135_42	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-2019135_43	eggNOG-mapper	861454.HMPREF9099_02115	NA	NA
UHGV-2019135_44	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2019135_44	UniRef90	UniRef90_A0A173S7H6	Phage minor structural protein GP20	NA
UHGV-2019135_44	eggNOG-mapper	1042156.CXIVA_00720	Phage minor structural protein GP20	NA
UHGV-2019135_44	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2019135_44	Structural annotation	PF06810	NA	NA
UHGV-2019135_45	PHROG	phrog_247	major head protein	head and packaging
UHGV-2019135_45	UniRef90	UniRef90_A0A1Q6SQL3	Coat protein	NA
UHGV-2019135_45	eggNOG-mapper	610130.Closa_1395	NA	NA
UHGV-2019135_45	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-2019135_46	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2019135_46	UniRef90	UniRef90_A0A173S6L1	Phage gp6-like head-tail connector protein	NA
UHGV-2019135_46	eggNOG-mapper	1567014.A0A0A7RTX9_9VIRU	Phage gp6-like head-tail connector protein	NA
UHGV-2019135_46	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2019135_46	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2019135_47	PHROG	phrog_615	head-tail adaptor	connector
UHGV-2019135_47	UniRef90	UniRef90_UPI001C0FD815	ABC transporter ATP-binding protein	NA
UHGV-2019135_47	eggNOG-mapper	742740.HMPREF9474_02351	NA	NA
UHGV-2019135_47	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-2019135_48	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2019135_48	UniRef90	UniRef90_A0A6L6L8L6	HK97 gp10 family phage protein	NA
UHGV-2019135_48	eggNOG-mapper	742740.HMPREF9474_02350	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2019135_48	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2019135_48	Structural annotation	PF04883, COG5005	NA	NA
UHGV-2019135_49	PHROG	phrog_525	NA	unknown function
UHGV-2019135_49	UniRef90	UniRef90_A9KQ05	NA	NA
UHGV-2019135_49	eggNOG-mapper	742740.HMPREF9474_02349	NA	NA
UHGV-2019135_49	Pfam	PF20765	NA	DUF6838
UHGV-2019135_49	Structural annotation	PF20765, COG5003	NA	NA
UHGV-2019135_50	PHROG	phrog_966	NA	unknown function
UHGV-2019135_50	eggNOG-mapper	742740.HMPREF9474_02348	NA	NA
UHGV-2019135_51	PHROG	phrog_279	tail sheath	tail
UHGV-2019135_51	UniRef90	UniRef90_A0A6L6XE33	Phage tail protein	NA
UHGV-2019135_51	eggNOG-mapper	742740.HMPREF9474_02347	Phage tail sheath C-terminal domain	NA
UHGV-2019135_51	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-2019135_51	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-2019135_51	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-2019135_51	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-2019135_52	PHROG	phrog_365	tail protein	tail
UHGV-2019135_52	UniRef90	UniRef90_A0A7U9X6Z5	Phage-like element PBSX protein XkdM	NA
UHGV-2019135_52	eggNOG-mapper	1235790.C805_00599	Phage tail tube protein	NA
UHGV-2019135_52	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-2019135_52	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-2019135_53	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-2019135_53	UniRef90	UniRef90_D4M0Z0	Phage XkdN-like protein	NA
UHGV-2019135_53	eggNOG-mapper	742740.HMPREF9474_02345	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-2019135_53	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-2019135_53	Structural annotation	PF08890, COG4518	NA	NA
UHGV-2019135_54	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-2019135_54	UniRef90	UniRef90_A0A6L6L8D2	Tape measure protein	NA
UHGV-2019135_54	eggNOG-mapper	742740.HMPREF9474_02344	tape measure	NA
UHGV-2019135_54	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2019135_54	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2019135_54	COG	COG5281	Phage-related minor tail protein	NA
UHGV-2019135_54	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2019135_55	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2019135_55	PHROG	phrog_380	endolysin	lysis
UHGV-2019135_55	UniRef90	UniRef90_A0A413SP99	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-2019135_55	eggNOG-mapper	742740.HMPREF9474_02343	Lysin motif	NA
UHGV-2019135_55	Pfam	PF01476	LysM domain	LysM
UHGV-2019135_55	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-2019135_55	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-2019135_56	PHROG	phrog_400	tail protein	tail
UHGV-2019135_56	UniRef90	UniRef90_A0A413SP95	Hydrolase	NA
UHGV-2019135_56	eggNOG-mapper	1029718.SFBM_0133	PFAM Phage late control gene D protein (GPD)	NA
UHGV-2019135_56	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-2019135_56	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-2019135_57	PHROG	phrog_579	NA	unknown function
UHGV-2019135_57	UniRef90	UniRef90_A0A413SP62	NA	NA
UHGV-2019135_57	eggNOG-mapper	357809.Cphy_0791	NA	NA
UHGV-2019135_57	Pfam	PF10844	NA	DUF2577
UHGV-2019135_57	Structural annotation	PF10844	NA	NA
UHGV-2019135_58	PHROG	phrog_120	baseplate protein	tail
UHGV-2019135_58	UniRef90	UniRef90_A0A413SPA1	NA	NA
UHGV-2019135_58	eggNOG-mapper	1235790.C805_00606	NA	NA
UHGV-2019135_58	Pfam	PF10934	NA	DUF2634
UHGV-2019135_58	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-2019135_58	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-2019135_59	PHROG	phrog_6	baseplate protein	tail
UHGV-2019135_59	UniRef90	UniRef90_A0A6L6XEW4	Phage tail protein	NA
UHGV-2019135_59	eggNOG-mapper	1449050.JNLE01000005_gene4831	Baseplate J-like protein	NA
UHGV-2019135_59	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-2019135_59	COG	COG3299	NA	NA
UHGV-2019135_59	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-2019135_60	PHROG	phrog_521	tail protein	tail
UHGV-2019135_60	UniRef90	UniRef90_A0A6L6XE44	NA	NA
UHGV-2019135_60	eggNOG-mapper	1163671.JAGI01000002_gene2842	NA	NA
UHGV-2019135_60	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-2019135_60	Structural annotation	PF10076, COG3778	NA	NA
UHGV-2019135_64	PHROG	phrog_134	NA	unknown function
UHGV-2019135_64	UniRef90	UniRef90_A0A3R6AA38	XkdX family protein	NA
UHGV-2019135_64	eggNOG-mapper	1298920.KI911353_gene4834	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-2019135_64	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-2019135_64	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-2019135_66	PHROG	phrog_199	holin	lysis
UHGV-2019135_66	UniRef90	UniRef90_C7GBZ0	Toxin secretion/phage lysis holin	NA
UHGV-2019135_66	eggNOG-mapper	428126.CLOSPI_02191	Bacteriophage holin family	NA
UHGV-2019135_66	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2019135_66	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2019135_66	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2019135_67	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-2019135_67	PHROG	phrog_7	endolysin	lysis
UHGV-2019135_67	UniRef90	UniRef90_C7GBY9	Lysozyme	NA
UHGV-2019135_67	eggNOG-mapper	397291.C804_01109	Phage lysozyme	NA
UHGV-2019135_67	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-2019135_67	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2019135_67	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-2019135_67	HAMAP	MF_04110	Endolysin	NA
UHGV-2019135_67	Structural annotation	PF01471, PF00959, MF_04110, COG3772, COG3409	NA	NA
UHGV-2019135_68	eggNOG-mapper	411902.CLOBOL_04413	NA	NA
UHGV-2019135_68	Structural annotation	PF20505, NF001460, COG2974	NA	NA
UHGV-2019135_69	eggNOG-mapper	1410661.JNKW01000001_gene490	NA	NA
UHGV-2019135_69	Structural annotation	PF19363, COG3355	NA	NA
UHGV-2019135_70	PHROG	phrog_18586	NA	unknown function
UHGV-2019135_70	UniRef90	UniRef90_UPI001F3082DB	restriction endonuclease	NA
UHGV-2019135_70	eggNOG-mapper	411902.CLOBOL_04415	NA	NA
UHGV-2019135_70	Structural annotation	PF04471, COG1715	NA	NA