UHGV-2019284

Genome information

Genome length 34,003 bps

CDS count 46

Completeness 96.74% (high-quality)

geNomad score 0.9743

Prediction confidence Confident

Genome information
Genome ID	UHGV-2019284
vOTU ID	vOTU-008988
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029137\|Ga0168731_100016\|provirus_214054_248056
BioSample	SAMEA2737712
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.74% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9743
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.73
Jumbo phage	No

Genome content
Genome length	34,003 bps
GC content	59.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	94.12%
Average CDS length	698.74 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2019284_1	KOfam	K14059	int; integrase	NA
UHGV-2019284_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2019284_1	UniRef90	UniRef90_A0A3E2U2B4	Site-specific integrase	NA
UHGV-2019284_1	eggNOG-mapper	718252.FP2_06900	Phage integrase, N-terminal SAM-like domain	NA
UHGV-2019284_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2019284_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2019284_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2019284_1	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2019284_3	PHROG	phrog_1847	NA	unknown function
UHGV-2019284_3	UniRef90	UniRef90_A0A291T8E0	T5orf172 domain-containing protein	NA
UHGV-2019284_3	eggNOG-mapper	718252.FP2_06880	NA	NA
UHGV-2019284_3	Pfam	PF13250	NA	DUF4041
UHGV-2019284_3	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-2019284_3	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-2019284_3	Structural annotation	PF13250, PF19824, MF_01506	NA	NA
UHGV-2019284_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2019284_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2019284_4	UniRef90	UniRef90_A0A564U5Z2	LexA repressor	NA
UHGV-2019284_4	eggNOG-mapper	718252.FP2_06870	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-2019284_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2019284_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2019284_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2019284_4	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-2019284_5	UniRef90	UniRef90_UPI001CD6A7E5	helix-turn-helix domain-containing protein	NA
UHGV-2019284_5	eggNOG-mapper	718252.FP2_06860	NA	NA
UHGV-2019284_5	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-2019284_8	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2019284_8	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2019284_8	UniRef90	UniRef90_D4K457	Prophage antirepressor	NA
UHGV-2019284_8	eggNOG-mapper	718252.FP2_06840	BRO family, N-terminal domain	NA
UHGV-2019284_8	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2019284_8	COG	COG3617	Prophage antirepressor	NA
UHGV-2019284_8	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-2019284_9	UniRef90	UniRef90_A0A3E2U219	DNA-binding protein	NA
UHGV-2019284_9	eggNOG-mapper	718252.FP2_06830	NA	NA
UHGV-2019284_13	UniRef90	UniRef90_UPI001D0E65C2	NA	NA
UHGV-2019284_13	Structural annotation	PF12957	NA	NA
UHGV-2019284_14	eggNOG-mapper	665956.HMPREF1032_03597	DNA binding	NA
UHGV-2019284_14	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2019284_16	PHROG	phrog_1366	NA	unknown function
UHGV-2019284_16	UniRef90	UniRef90_R6S946	AAA domain-containing protein	NA
UHGV-2019284_16	eggNOG-mapper	748224.HMPREF9436_01458	AAA domain	NA
UHGV-2019284_16	Pfam	PF13479	AAA domain	AAA_24
UHGV-2019284_16	COG	COG0468	RecA/RadA recombinase	NA
UHGV-2019284_16	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2019284_17	Structural annotation	PF03838, MF_00130, TIGR00648, COG3331	NA	NA
UHGV-2019284_18	KOfam	K18959	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	NA
UHGV-2019284_18	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2019284_18	UniRef90	UniRef90_E2ZIG6	Helicase C-terminal domain protein	NA
UHGV-2019284_18	eggNOG-mapper	748224.HMPREF9436_01460	Type III restriction protein res subunit	NA
UHGV-2019284_18	PADLOC	mREase_IV_00004	Type IV methyl-directed restriction enzyme	RM
UHGV-2019284_18	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2019284_18	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2019284_18	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2019284_18	Structural annotation	PF04851, PF16203, MF_01489, TIGR00603, COG1061	NA	NA
UHGV-2019284_19	Structural annotation	PF05037	NA	NA
UHGV-2019284_20	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-2019284_20	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2019284_20	UniRef90	UniRef90_E2ZIG8	Nucleoside triphosphatase, D5 family	NA
UHGV-2019284_20	eggNOG-mapper	748224.HMPREF9436_01462	Phage plasmid primase, P4 family	NA
UHGV-2019284_20	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-2019284_20	Pfam	PF19263	NA	DUF5906
UHGV-2019284_20	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-2019284_20	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-2019284_20	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2019284_20	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-2019284_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2019284_21	UniRef90	UniRef90_A0A6N7TNN9	NA	NA
UHGV-2019284_21	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-2019284_21	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-2019284_22	PHROG	phrog_2412	NA	unknown function
UHGV-2019284_22	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-2019284_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2019284_23	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2019284_23	UniRef90	UniRef90_A0A844EGH8	PBSX family phage terminase large subunit	NA
UHGV-2019284_23	eggNOG-mapper	1449050.JNLE01000003_gene3895	phage terminase, large subunit, PBSX family	NA
UHGV-2019284_23	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2019284_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-2019284_23	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2019284_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-2019284_24	UniRef90	UniRef90_A0A7G9WF85	Phage portal protein	NA
UHGV-2019284_24	eggNOG-mapper	718252.FP2_06700	NA	NA
UHGV-2019284_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2019284_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2019284_25	UniRef90	UniRef90_D4K446	Phage minor capsid protein 2	NA
UHGV-2019284_25	eggNOG-mapper	718252.FP2_06690	NA	NA
UHGV-2019284_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2019284_25	COG	COG2369	NA	NA
UHGV-2019284_25	Structural annotation	PF06152, PF12106	NA	NA
UHGV-2019284_27	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2019284_27	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-2019284_27	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-2019284_27	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2019284_27	Structural annotation	PF06810	NA	NA
UHGV-2019284_28	PHROG	phrog_267	major head protein	head and packaging
UHGV-2019284_28	UniRef90	UniRef90_A0A0D8J2H9	p22 coat protein 5	NA
UHGV-2019284_28	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-2019284_28	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2019284_29	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2019284_30	PHROG	phrog_3366	NA	unknown function
UHGV-2019284_30	Structural annotation	PF20536	NA	NA
UHGV-2019284_31	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2019284_31	UniRef90	UniRef90_UPI0016528549	minor capsid protein	NA
UHGV-2019284_31	eggNOG-mapper	718252.FP2_06630	Minor capsid protein	NA
UHGV-2019284_31	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2019284_31	Structural annotation	PF11114	NA	NA
UHGV-2019284_32	PHROG	phrog_3266	tail completion	connector
UHGV-2019284_32	eggNOG-mapper	718252.FP2_06620	NA	NA
UHGV-2019284_32	Structural annotation	PF12691	NA	NA
UHGV-2019284_33	PHROG	phrog_820	major tail protein	tail
UHGV-2019284_33	eggNOG-mapper	718252.FP2_06610	NA	NA
UHGV-2019284_33	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2019284_34	PHROG	phrog_4450	NA	unknown function
UHGV-2019284_34	Structural annotation	PF20378	NA	NA
UHGV-2019284_35	PHROG	phrog_706	NA	unknown function
UHGV-2019284_35	UniRef90	UniRef90_D4K437	Bacteriophage Gp15 protein	NA
UHGV-2019284_35	eggNOG-mapper	718252.FP2_06590	Bacteriophage Gp15 protein	NA
UHGV-2019284_35	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2019284_35	Structural annotation	PF06854	NA	NA
UHGV-2019284_36	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-2019284_36	UniRef90	UniRef90_UPI00030AC5DB	tape measure protein	NA
UHGV-2019284_36	eggNOG-mapper	748224.HMPREF9436_03326	Phage tail tape measure protein, TP901 family	NA
UHGV-2019284_36	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2019284_36	COG	COG5283	Phage-related tail protein	NA
UHGV-2019284_36	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2019284_37	PHROG	phrog_36410	NA	unknown function
UHGV-2019284_37	UniRef90	UniRef90_UPI00130E98E0	phage tail family protein	NA
UHGV-2019284_37	eggNOG-mapper	748224.HMPREF9436_03325	Phage tail protein	NA
UHGV-2019284_37	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2019284_38	PHROG	phrog_538	minor tail protein	tail
UHGV-2019284_38	UniRef90	UniRef90_UPI0011064D4D	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2019284_38	eggNOG-mapper	748224.HMPREF9436_03324	NA	NA
UHGV-2019284_38	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2019284_38	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2019284_39	PHROG	phrog_9534	head protein	head and packaging
UHGV-2019284_39	eggNOG-mapper	748224.HMPREF9436_03323	COG NOG18825 non supervised orthologous group	NA
UHGV-2019284_39	Structural annotation	PF21567	NA	NA
UHGV-2019284_42	KOfam	K19158	yoeB; toxin YoeB [EC:3.1.-.-]	NA
UHGV-2019284_42	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2019284_42	UniRef90	UniRef90_A0A564SVN3	Putative mRNA interferase YoeB	NA
UHGV-2019284_42	eggNOG-mapper	718252.FP2_06510	YoeB-like toxin of bacterial type II toxin-antitoxin system	NA
UHGV-2019284_42	Pfam	PF06769	YoeB-like toxin of bacterial type II toxin-antitoxin system	YoeB_toxin
UHGV-2019284_42	NCBIFam	TIGR02116.1	Txe/YoeB family addiction module toxin	NA
UHGV-2019284_42	COG	COG4115	Toxin component of the Txe-Axe toxin-antitoxin module, Txe/YoeB family	NA
UHGV-2019284_42	Structural annotation	PF06769, TIGR02116, COG4115	NA	NA
UHGV-2019284_43	KOfam	K07473	dinJ; DNA-damage-inducible protein J	NA
UHGV-2019284_43	PHROG	phrog_2737	NA	unknown function
UHGV-2019284_43	UniRef90	UniRef90_A0A2A7BEI9	Type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-2019284_43	eggNOG-mapper	718252.FP2_06500	Addiction module antitoxin, RelB DinJ family	NA
UHGV-2019284_43	Pfam	PF04221	RelB antitoxin	RelB
UHGV-2019284_43	NCBIFam	TIGR02384.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-2019284_43	COG	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	NA
UHGV-2019284_43	Structural annotation	PF04221, TIGR02384, COG3077	NA	NA
UHGV-2019284_44	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-2019284_44	PHROG	phrog_894	endolysin	lysis
UHGV-2019284_44	UniRef90	UniRef90_A0A564SWH3	Peptidase M15	NA
UHGV-2019284_44	eggNOG-mapper	718252.FP2_05470	Peptidase M15A	NA
UHGV-2019284_44	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-2019284_44	COG	COG3108	NA	NA
UHGV-2019284_44	Structural annotation	PF05951, COG3108	NA	NA
UHGV-2019284_45	PHROG	phrog_1863	NA	unknown function
UHGV-2019284_45	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-2019284_46	PHROG	phrog_263	holin	lysis
UHGV-2019284_46	UniRef90	UniRef90_D4K430	Holin, SPP1 family	NA
UHGV-2019284_46	eggNOG-mapper	718252.FP2_06470	SPP1 phage holin	NA
UHGV-2019284_46	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-2019284_46	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-2019284_46	Structural annotation	PF04688, TIGR01592	NA	NA