UHGV-2019695

Genome information

Genome length 35,480 bps

CDS count 52

Completeness 90.49% (high-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-2019695
vOTU ID	vOTU-065054
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029088\|Ga0169204_100143\|provirus_38870_80868
BioSample	SAMEA2579938
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.49% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	66.22
Jumbo phage	No

Genome content
Genome length	35,480 bps
GC content	42.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	92.61%
Average CDS length	634.21 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2019695_1	eggNOG-mapper	1232453.BAIF02000051_gene1085	NA	NA
UHGV-2019695_2	UniRef90	UniRef90_A0A1C6A241	CD20-like family	NA
UHGV-2019695_2	eggNOG-mapper	411470.RUMGNA_03782	NA	NA
UHGV-2019695_3	UniRef90	UniRef90_A7B867	NMT1 domain-containing protein	NA
UHGV-2019695_3	eggNOG-mapper	411470.RUMGNA_03783	NMT1/THI5 like	NA
UHGV-2019695_3	Pfam	PF09084	NMT1/THI5 like	NMT1
UHGV-2019695_3	COG	COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	NA
UHGV-2019695_5	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2019695_5	PHROG	phrog_435	endolysin	lysis
UHGV-2019695_5	UniRef90	UniRef90_A0A2N5NRG3	MurNAc-LAA domain-containing protein	NA
UHGV-2019695_5	eggNOG-mapper	411470.RUMGNA_02814	Ami_3	NA
UHGV-2019695_5	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2019695_5	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2019695_5	Structural annotation	PF01520, MF_00417, TIGR02883, COG0860	NA	NA
UHGV-2019695_6	PHROG	phrog_199	holin	lysis
UHGV-2019695_6	UniRef90	UniRef90_A0A2N5P5I5	Holin	NA
UHGV-2019695_6	eggNOG-mapper	1469948.JPNB01000001_gene536	TIGRFAM toxin secretion phage lysis holin	NA
UHGV-2019695_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2019695_6	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2019695_6	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2019695_6	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2019695_7	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-2019695_7	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-2019695_7	UniRef90	UniRef90_UPI00156EB2FA	collagen-like protein	NA
UHGV-2019695_7	eggNOG-mapper	411470.RUMGNA_02230	NA	NA
UHGV-2019695_7	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2019695_7	Pfam	PF21470	Minor structural protein 5-like, C-terminal domain	BppU-like_C
UHGV-2019695_7	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2019695_7	Structural annotation	PF14594, PF08931, PF13895, TIGR01665, TIGR04488, COG4926	NA	NA
UHGV-2019695_8	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-2019695_8	UniRef90	UniRef90_A0A415S8D0	Phage tail family protein	NA
UHGV-2019695_8	eggNOG-mapper	411470.RUMGNA_02229	NA	NA
UHGV-2019695_8	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2019695_8	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2019695_8	COG	COG4722	Phage-related protein YomH	NA
UHGV-2019695_8	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-2019695_9	PHROG	phrog_1204	tail protein	tail
UHGV-2019695_9	UniRef90	UniRef90_A0A415S8E0	TMP_3 domain-containing protein	NA
UHGV-2019695_9	eggNOG-mapper	673832.D2IYX6_9CAUD	transmembrane transport	NA
UHGV-2019695_9	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2019695_9	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2019695_9	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2019695_10	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-2019695_10	UniRef90	UniRef90_A0A0K9N8J7	NA	NA
UHGV-2019695_10	eggNOG-mapper	1232453.BAIF02000011_gene3366	NA	NA
UHGV-2019695_11	PHROG	phrog_183	tail chaperone protein	tail
UHGV-2019695_11	UniRef90	UniRef90_UPI001E3CACFF	tail assembly chaperone	NA
UHGV-2019695_11	eggNOG-mapper	476272.RUMHYD_02861	Phage tail assembly chaperone protein, TAC	NA
UHGV-2019695_11	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-2019695_11	Structural annotation	PF12363	NA	NA
UHGV-2019695_12	PHROG	phrog_238	major tail protein	tail
UHGV-2019695_12	UniRef90	UniRef90_A0A2N5PI04	Phage major tail protein, TP901-1 family	NA
UHGV-2019695_12	eggNOG-mapper	1235798.C817_03471	Phage tail tube protein	NA
UHGV-2019695_12	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-2019695_12	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-2019695_12	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2019695_13	PHROG	phrog_176	tail terminator	connector
UHGV-2019695_13	UniRef90	UniRef90_UPI001E62787A	NA	NA
UHGV-2019695_13	eggNOG-mapper	476272.RUMHYD_02859	NA	NA
UHGV-2019695_13	Structural annotation	PF11367	NA	NA
UHGV-2019695_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2019695_14	UniRef90	UniRef90_UPI001D03F1E5	HK97 gp10 family phage protein	NA
UHGV-2019695_14	eggNOG-mapper	476272.RUMHYD_02858	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2019695_14	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2019695_14	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2019695_14	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-2019695_15	PHROG	phrog_348	minor head protein	head and packaging
UHGV-2019695_15	eggNOG-mapper	476272.RUMHYD_02857	NA	NA
UHGV-2019695_15	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2019695_16	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2019695_16	UniRef90	UniRef90_A0A174PRY0	Phage gp6-like head-tail connector protein	NA
UHGV-2019695_16	eggNOG-mapper	476272.RUMHYD_02856	Phage gp6-like head-tail connector protein	NA
UHGV-2019695_16	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2019695_16	Structural annotation	PF05135	NA	NA
UHGV-2019695_17	UniRef90	UniRef90_UPI001D05A857	head fiber protein	NA
UHGV-2019695_17	eggNOG-mapper	1232443.BAIA02000078_gene28	domain, Protein	NA
UHGV-2019695_17	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-2019695_17	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-2019695_18	PHROG	phrog_840	major head protein	head and packaging
UHGV-2019695_18	UniRef90	UniRef90_A0A2N5P5Q7	Phage capsid protein	NA
UHGV-2019695_18	eggNOG-mapper	294382.Q5YA70_9CAUD	NA	NA
UHGV-2019695_18	Structural annotation	PF03864, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-2019695_19	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-2019695_19	UniRef90	UniRef90_A0A3A5TW83	NA	NA
UHGV-2019695_19	eggNOG-mapper	272558.10176153	NA	NA
UHGV-2019695_19	Pfam	PF14265	NA	DUF4355
UHGV-2019695_19	Structural annotation	PF14265	NA	NA
UHGV-2019695_20	KOfam	K07584	NA	NA
UHGV-2019695_20	PHROG	phrog_4478	peptidase	other
UHGV-2019695_20	UniRef90	UniRef90_A0A415S8E3	Ribosomal-processing cysteine protease Prp	NA
UHGV-2019695_20	eggNOG-mapper	411470.RUMGNA_03236	Cysteine protease Prp	NA
UHGV-2019695_20	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-2019695_20	COG	COG2868	NA	NA
UHGV-2019695_20	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-2019695_21	PHROG	phrog_1233	NA	unknown function
UHGV-2019695_21	UniRef90	UniRef90_A0A855HLY8	Peptidase_M78 domain-containing protein	NA
UHGV-2019695_21	eggNOG-mapper	476272.RUMHYD_02850	NA	NA
UHGV-2019695_21	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2019695_21	Structural annotation	PF06114	NA	NA
UHGV-2019695_22	eggNOG-mapper	1304866.K413DRAFT_0808	NA	NA
UHGV-2019695_22	Structural annotation	PF10827	NA	NA
UHGV-2019695_23	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2019695_23	UniRef90	UniRef90_A0A2N5P5J9	Phage_Mu_F domain-containing protein	NA
UHGV-2019695_23	eggNOG-mapper	1232453.BAIF02000011_gene3354	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-2019695_23	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2019695_23	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2019695_23	COG	COG2369	NA	NA
UHGV-2019695_23	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-2019695_24	PHROG	phrog_64	portal protein	head and packaging
UHGV-2019695_24	UniRef90	UniRef90_A0A2N5PAZ2	Phage portal protein	NA
UHGV-2019695_24	eggNOG-mapper	1235796.C815_00925	Phage portal protein, SPP1 family	NA
UHGV-2019695_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2019695_24	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-2019695_24	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-2019695_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2019695_25	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2019695_25	UniRef90	UniRef90_A0A2N5P5F6	Terminase	NA
UHGV-2019695_25	eggNOG-mapper	1430331.EP10_10340	Phage terminase, large subunit	NA
UHGV-2019695_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2019695_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2019695_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2019695_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-2019695_25	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2019695_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2019695_26	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2019695_26	UniRef90	UniRef90_A0A2N5PI15	Terminase small subunit	NA
UHGV-2019695_26	eggNOG-mapper	1235792.C808_05330	Terminase small subunit	NA
UHGV-2019695_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2019695_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2019695_26	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2019695_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2019695_27	UniRef90	UniRef90_A7B3S5	Sigma70_r4 domain-containing protein	NA
UHGV-2019695_27	eggNOG-mapper	411470.RUMGNA_02205	Sigma-70, region 4	NA
UHGV-2019695_27	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2019695_27	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-2019695_29	eggNOG-mapper	411470.RUMGNA_02203	NA	NA
UHGV-2019695_31	UniRef90	UniRef90_A0A8B3BTL4	NA	NA
UHGV-2019695_31	eggNOG-mapper	411462.DORLON_00804	NA	NA
UHGV-2019695_32	PHROG	phrog_35456	NA	unknown function
UHGV-2019695_32	UniRef90	UniRef90_N2A4R3	GIY-YIG domain-containing protein	NA
UHGV-2019695_32	eggNOG-mapper	1235802.C823_04633	NA	NA
UHGV-2019695_32	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-2019695_35	eggNOG-mapper	97139.C824_00033	NA	NA
UHGV-2019695_36	PHROG	phrog_17690	NA	unknown function
UHGV-2019695_36	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-2019695_36	eggNOG-mapper	665950.HMPREF1025_02546	NA	NA
UHGV-2019695_37	Structural annotation	NF041290	NA	NA
UHGV-2019695_38	PHROG	phrog_23374	NA	unknown function
UHGV-2019695_38	eggNOG-mapper	1256908.HMPREF0373_00664	NA	NA
UHGV-2019695_39	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-2019695_39	UniRef90	UniRef90_UPI00156EF603	NA	NA
UHGV-2019695_39	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-2019695_39	Pfam	PF06048	NA	DUF927
UHGV-2019695_39	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-2019695_39	COG	COG5519	NA	NA
UHGV-2019695_39	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-2019695_40	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-2019695_40	PHROG	phrog_11992	NA	unknown function
UHGV-2019695_40	UniRef90	UniRef90_UPI00156FEB22	CHC2 zinc finger domain-containing protein	NA
UHGV-2019695_40	eggNOG-mapper	1304866.K413DRAFT_0824	CHC2 zinc finger	NA
UHGV-2019695_40	PADLOC	drt-UG29	DRT	DRT
UHGV-2019695_40	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-2019695_40	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-2019695_40	Structural annotation	PF01807, PF00401	NA	NA
UHGV-2019695_41	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-2019695_41	UniRef90	UniRef90_A0A1C5UKT4	ERCC4 domain-containing protein	NA
UHGV-2019695_41	eggNOG-mapper	658655.HMPREF0988_02583	ERCC4 domain	NA
UHGV-2019695_41	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-2019695_41	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-2019695_42	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2019695_42	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2019695_42	UniRef90	UniRef90_A0A1C5QS41	Single-stranded DNA-binding protein	NA
UHGV-2019695_42	eggNOG-mapper	411460.RUMTOR_02067	NA	NA
UHGV-2019695_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2019695_42	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2019695_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2019695_42	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2019695_42	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2019695_43	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2019695_43	UniRef90	UniRef90_A0A6N2RMY2	ERF superfamily protein	NA
UHGV-2019695_43	eggNOG-mapper	1484479.DI14_04910	ERF superfamily	NA
UHGV-2019695_43	Pfam	PF04404	ERF superfamily	ERF
UHGV-2019695_43	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-2019695_45	PHROG	phrog_30234	NA	unknown function
UHGV-2019695_45	eggNOG-mapper	411461.DORFOR_00021	NA	NA
UHGV-2019695_52	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-2019695_52	UniRef90	UniRef90_UPI000E4A5456	Rha family transcriptional regulator	NA
UHGV-2019695_52	eggNOG-mapper	1304866.K413DRAFT_3063	TIGRFAM phage regulatory protein, Rha family	NA
UHGV-2019695_52	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-2019695_52	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-2019695_52	COG	COG3617	Prophage antirepressor	NA
UHGV-2019695_52	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA