UHGV-2020507

Genome information

Genome length 36,746 bps

CDS count 52

Completeness 83.23% (medium-quality)

geNomad score 0.9523

Prediction confidence Confident

Genome information
Genome ID	UHGV-2020507
vOTU ID	vOTU-016205
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029129\|Ga0168797_100419\|provirus_3_36748
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.23% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9523
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.16
Jumbo phage	No

Genome content
Genome length	36,746 bps
GC content	48.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	89.93%
Average CDS length	643.33 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2020507_1	eggNOG-mapper	469610.HMPREF0189_00471	NA	NA
UHGV-2020507_1	COG	COG2982	NA	NA
UHGV-2020507_2	KOfam	K14059	int; integrase	NA
UHGV-2020507_2	PHROG	phrog_1	integrase	integration and excision
UHGV-2020507_2	UniRef90	UniRef90_A0A3D4G8C1	Core-binding (CB) domain-containing protein	NA
UHGV-2020507_2	eggNOG-mapper	469610.HMPREF0189_00470	Belongs to the 'phage' integrase family	NA
UHGV-2020507_2	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-2020507_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2020507_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2020507_2	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2020507_3	PHROG	phrog_1281	NA	unknown function
UHGV-2020507_3	UniRef90	UniRef90_A0A139JWD6	NA	NA
UHGV-2020507_3	eggNOG-mapper	742821.HMPREF9464_01844	Phage-associated protein	NA
UHGV-2020507_3	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-2020507_3	COG	COG3600	NA	NA
UHGV-2020507_3	Structural annotation	PF13274, COG3600	NA	NA
UHGV-2020507_5	UniRef90	UniRef90_A0A3D4G9A1	HTH_17 domain-containing protein	NA
UHGV-2020507_5	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2020507_5	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-2020507_5	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-2020507_9	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2020507_9	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2020507_9	UniRef90	UniRef90_A0A3D3SFE9	Single-stranded DNA-binding protein	NA
UHGV-2020507_9	eggNOG-mapper	1121939.L861_08395	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-2020507_9	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2020507_9	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2020507_9	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2020507_9	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2020507_9	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2020507_13	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2020507_13	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2020507_13	UniRef90	UniRef90_A0A6L6YJB2	Helix-turn-helix domain-containing protein	NA
UHGV-2020507_13	eggNOG-mapper	339671.Asuc_1215	Peptidase S24-like	NA
UHGV-2020507_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2020507_13	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-2020507_13	Structural annotation	PF12844, MF_00535, NF007257, COG3655	NA	NA
UHGV-2020507_14	UniRef90	UniRef90_UPI000E698A57	Cro/CI family transcriptional regulator	NA
UHGV-2020507_14	Structural annotation	PF14549, NF007282, COG4197	NA	NA
UHGV-2020507_17	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-2020507_17	PHROG	phrog_2249	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2020507_17	UniRef90	UniRef90_A0A6L6YKY2	NA	NA
UHGV-2020507_17	eggNOG-mapper	765910.MARPU_09580	Phage plasmid primase P4 family	NA
UHGV-2020507_17	Pfam	PF13362	Toprim domain	Toprim_3
UHGV-2020507_17	Pfam	PF19263	NA	DUF5906
UHGV-2020507_17	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2020507_17	Structural annotation	PF05272, PF03288, MF_04000, NF011296, TIGR00646, COG4643, COG3378	NA	NA
UHGV-2020507_19	Structural annotation	PF08281, MF_00245, NF007225, COG1595	NA	NA
UHGV-2020507_21	PHROG	phrog_3983	NA	unknown function
UHGV-2020507_21	UniRef90	UniRef90_UPI0007DABE11	NA	NA
UHGV-2020507_21	eggNOG-mapper	1038869.AXAN01000006_gene953	NA	NA
UHGV-2020507_21	Structural annotation	COG1846	NA	NA
UHGV-2020507_22	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2020507_22	PHROG	phrog_498	DNA methyltransferase	other
UHGV-2020507_22	UniRef90	UniRef90_K1JKR6	Methyltransferase	NA
UHGV-2020507_22	eggNOG-mapper	742823.HMPREF9465_00225	PFAM DNA methylase N-4 N-6	NA
UHGV-2020507_22	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2020507_22	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2020507_22	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2020507_22	COG	COG0863	DNA modification methylase	NA
UHGV-2020507_22	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-2020507_23	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-2020507_23	UniRef90	UniRef90_UPI001962216B	MarR family transcriptional regulator	NA
UHGV-2020507_23	eggNOG-mapper	626418.bglu_1g27350	transposase activity	NA
UHGV-2020507_23	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-2020507_23	Structural annotation	PF07471, COG4220	NA	NA
UHGV-2020507_24	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-2020507_24	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-2020507_24	UniRef90	UniRef90_A0A3B9Q8U5	Terminase	NA
UHGV-2020507_24	eggNOG-mapper	626418.bglu_1g27340	terminase GpA	NA
UHGV-2020507_24	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-2020507_24	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-2020507_24	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-2020507_24	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-2020507_24	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-2020507_25	Structural annotation	PF14545, NF033814	NA	NA
UHGV-2020507_26	PHROG	phrog_21	portal protein	head and packaging
UHGV-2020507_26	UniRef90	UniRef90_A0A3B9Q8L9	Phage portal protein	NA
UHGV-2020507_26	eggNOG-mapper	1266925.JHVX01000006_gene2063	Phage portal protein, lambda family	NA
UHGV-2020507_26	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-2020507_26	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-2020507_26	COG	COG5511	Phage capsid protein	NA
UHGV-2020507_26	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-2020507_27	KOfam	K06904	NA	NA
UHGV-2020507_27	PHROG	phrog_617	major head protein	head and packaging
UHGV-2020507_27	UniRef90	UniRef90_UPI001960F2D7	phage major capsid protein	NA
UHGV-2020507_27	eggNOG-mapper	1266925.JHVX01000006_gene2064	Phage capsid family	NA
UHGV-2020507_27	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2020507_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2020507_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2020507_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2020507_27	Structural annotation	PF05065, PF04586, MF_04119, TIGR01554, TIGR01543, COG4653, COG3740	NA	NA
UHGV-2020507_29	PHROG	phrog_2551	minor tail protein	tail
UHGV-2020507_29	Structural annotation	PF13856, TIGR01563, COG5614	NA	NA
UHGV-2020507_30	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-2020507_30	UniRef90	UniRef90_UPI001BE5FD78	phage tail protein	NA
UHGV-2020507_30	eggNOG-mapper	665959.HMPREF1013_00839	Prophage minor tail protein Z (GPZ)	NA
UHGV-2020507_30	Pfam	PF06763	Prophage minor tail protein Z (GPZ)	Minor_tail_Z
UHGV-2020507_30	Structural annotation	PF06763	NA	NA
UHGV-2020507_31	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-2020507_31	eggNOG-mapper	742823.HMPREF9465_00216	NA	NA
UHGV-2020507_32	PHROG	phrog_4089	NA	unknown function
UHGV-2020507_32	eggNOG-mapper	572547.Amico_1115	NA	NA
UHGV-2020507_33	KOfam	K06907	NA	NA
UHGV-2020507_33	PHROG	phrog_23	tail sheath	tail
UHGV-2020507_33	UniRef90	UniRef90_A0A3B9Q8J5	Phage tail protein	NA
UHGV-2020507_33	eggNOG-mapper	742823.HMPREF9465_00214	tail sheath protein	NA
UHGV-2020507_33	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-2020507_33	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-2020507_34	KOfam	K06908	NA	NA
UHGV-2020507_34	PHROG	phrog_55	head closure	connector
UHGV-2020507_34	UniRef90	UniRef90_A0A2X0VKX2	Phage major tail tube protein	NA
UHGV-2020507_34	eggNOG-mapper	399741.Spro_4913	major tail tube protein	NA
UHGV-2020507_34	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-2020507_34	COG	COG3498	Phage tail tube protein FII	NA
UHGV-2020507_34	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-2020507_35	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-2020507_35	UniRef90	UniRef90_UPI00097D2230	phage tail assembly protein	NA
UHGV-2020507_35	eggNOG-mapper	268407.PWYN_00045	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-2020507_35	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-2020507_35	Structural annotation	PF10109	NA	NA
UHGV-2020507_37	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-2020507_37	UniRef90	UniRef90_A0A2E2N188	Phage tail tape measure protein	NA
UHGV-2020507_37	eggNOG-mapper	1476902.A0A097P6S4_9CAUD	amidase activity	NA
UHGV-2020507_37	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2020507_37	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2020507_37	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-2020507_38	PHROG	phrog_46	tail protein	tail
UHGV-2020507_38	UniRef90	UniRef90_A0A1L8CRY0	Phage tail protein	NA
UHGV-2020507_38	eggNOG-mapper	1157490.EL26_01725	Phage Tail Protein X	NA
UHGV-2020507_38	Pfam	PF05489	Phage Tail Protein X	Phage_tail_X
UHGV-2020507_38	COG	COG5004	P2-like prophage tail protein X	NA
UHGV-2020507_38	Structural annotation	PF05489, TIGR02899, COG5004	NA	NA
UHGV-2020507_39	KOfam	K06905	NA	NA
UHGV-2020507_39	PHROG	phrog_52	tail protein	tail
UHGV-2020507_39	UniRef90	UniRef90_A0A3B9Q8K7	Late control D family protein	NA
UHGV-2020507_39	eggNOG-mapper	742823.HMPREF9465_00209	Late control D family protein	NA
UHGV-2020507_39	Pfam	PF05954	Phage tail baseplate hub (GPD)	Phage_GPD
UHGV-2020507_39	COG	COG3500	NA	NA
UHGV-2020507_39	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-2020507_40	PHROG	phrog_9992	baseplate assembly protein	tail
UHGV-2020507_40	UniRef90	UniRef90_UPI001961A54A	phage baseplate assembly protein V	NA
UHGV-2020507_40	eggNOG-mapper	742823.HMPREF9465_00208	Baseplate assembly protein	NA
UHGV-2020507_40	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-2020507_40	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-2020507_40	Structural annotation	PF04717, PF11280, MF_00075, TIGR01644, COG4540	NA	NA
UHGV-2020507_41	PHROG	phrog_76	tail protein	tail
UHGV-2020507_41	UniRef90	UniRef90_UPI000491D17F	phage tail protein	NA
UHGV-2020507_41	eggNOG-mapper	1449063.JMLS01000030_gene464	Phage P2 GpU	NA
UHGV-2020507_41	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-2020507_41	COG	COG3499	NA	NA
UHGV-2020507_41	Structural annotation	PF06995, TIGR01633, COG3499	NA	NA
UHGV-2020507_42	KOfam	K06903	NA	NA
UHGV-2020507_42	PHROG	phrog_43	baseplate wedge subunit	tail
UHGV-2020507_42	UniRef90	UniRef90_D1Y2B9	Putative lysozyme	NA
UHGV-2020507_42	eggNOG-mapper	352165.HMPREF7215_2807	GPW Gp25 family protein	NA
UHGV-2020507_42	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-2020507_42	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-2020507_43	PHROG	phrog_6	baseplate protein	tail
UHGV-2020507_43	UniRef90	UniRef90_UPI00097CE43B	baseplate J/gp47 family protein	NA
UHGV-2020507_43	eggNOG-mapper	742823.HMPREF9465_00205	Baseplate J-like protein	NA
UHGV-2020507_43	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-2020507_43	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-2020507_43	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-2020507_44	PHROG	phrog_48	tail protein	tail
UHGV-2020507_44	UniRef90	UniRef90_K1KKI1	Phage tail protein I	NA
UHGV-2020507_44	eggNOG-mapper	742823.HMPREF9465_00204	Tail protein I	NA
UHGV-2020507_44	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-2020507_44	NCBIFam	TIGR01634.1	phage tail protein I	NA
UHGV-2020507_44	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-2020507_44	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-2020507_45	PHROG	phrog_15547	NA	unknown function
UHGV-2020507_45	UniRef90	UniRef90_UPI00196180A7	tail fiber protein	NA
UHGV-2020507_45	eggNOG-mapper	742823.HMPREF9465_00202	tail collar domain protein	NA
UHGV-2020507_45	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-2020507_45	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-2020507_45	COG	COG4675	Phage tail collar domain	NA
UHGV-2020507_45	Structural annotation	PF12571, COG5301	NA	NA
UHGV-2020507_47	KOfam	K14059	int; integrase	NA
UHGV-2020507_47	PHROG	phrog_1	integrase	integration and excision
UHGV-2020507_47	UniRef90	UniRef90_UPI0012BC2F58	integrase arm-type DNA-binding domain-containing protein	NA
UHGV-2020507_47	eggNOG-mapper	742821.HMPREF9464_01814	Belongs to the 'phage' integrase family	NA
UHGV-2020507_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2020507_47	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2020507_47	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2020507_48	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-2020507_48	UniRef90	UniRef90_UPI0019D5E4CB	phage tail assembly chaperone	NA
UHGV-2020507_48	eggNOG-mapper	742823.HMPREF9465_01858	Phage tail assembly chaperone protein	NA
UHGV-2020507_48	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-2020507_48	Structural annotation	PF16778	NA	NA
UHGV-2020507_49	PHROG	phrog_199	holin	lysis
UHGV-2020507_49	UniRef90	UniRef90_UPI0012BCAC2D	phage holin family protein	NA
UHGV-2020507_49	eggNOG-mapper	762966.HMPREF9439_01063	Bacteriophage holin family	NA
UHGV-2020507_49	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2020507_49	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2020507_49	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2020507_49	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2020507_50	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-2020507_50	PHROG	phrog_894	endolysin	lysis
UHGV-2020507_50	UniRef90	UniRef90_A0A3D4GBZ5	Peptidase_M15_3 domain-containing protein	NA
UHGV-2020507_50	eggNOG-mapper	572547.Amico_1100	Peptidase M15	NA
UHGV-2020507_50	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-2020507_50	COG	COG3108	NA	NA
UHGV-2020507_50	Structural annotation	PF05951, COG3108	NA	NA
UHGV-2020507_52	UniRef90	UniRef90_A0A1N7K090	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-2020507_52	eggNOG-mapper	272942.RCAP_rcc03343	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-2020507_52	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-2020507_52	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA