UHGV-2020897

Genome information

Genome length 36,351 bps

CDS count 45

Completeness 55.66% (medium-quality)

geNomad score 0.9034

Prediction confidence Confident

Genome information
Genome ID	UHGV-2020897
vOTU ID	vOTU-015825
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029130\|Ga0168772_100011\|provirus_267324_306605
BioSample	SAMEA2737753
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	55.66% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9034
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.57
Jumbo phage	No

Genome content
Genome length	36,351 bps
GC content	47.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	93.47%
Average CDS length	757.33 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2020897_1	UniRef90	UniRef90_A0A415AQH1	N-acetyltransferase domain-containing protein	NA
UHGV-2020897_1	eggNOG-mapper	1203611.KB894548_gene2494	NA	NA
UHGV-2020897_1	Structural annotation	PF13673, MF_02018, NF007644, COG2388	NA	NA
UHGV-2020897_3	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-2020897_3	UniRef90	UniRef90_A0A3R6SMQ4	Abi family protein	NA
UHGV-2020897_3	eggNOG-mapper	742726.HMPREF9448_01139	Abi-like protein	NA
UHGV-2020897_3	PADLOC	AbiD	AbiD	Abi
UHGV-2020897_3	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-2020897_3	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-2020897_3	Structural annotation	PF07751, COG4823	NA	NA
UHGV-2020897_4	PHROG	phrog_38147	NA	unknown function
UHGV-2020897_4	UniRef90	UniRef90_A0A7J4J125	NA	NA
UHGV-2020897_4	eggNOG-mapper	272624.lpg1073	NA	NA
UHGV-2020897_4	PADLOC	SduA_00023	NA	Shedu
UHGV-2020897_4	Pfam	PF21407	Shedu protein SduA, N-terminal	SduA_N
UHGV-2020897_4	Pfam	PF14082	Shedu protein SduA, C-terminal	SduA_C
UHGV-2020897_5	UniRef90	UniRef90_A0A1T5JE11	LlaJI restriction endonuclease	NA
UHGV-2020897_5	eggNOG-mapper	997829.HMPREF1121_01758	LlaJI restriction endonuclease	NA
UHGV-2020897_6	KOfam	K07452	mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-]	NA
UHGV-2020897_6	PHROG	phrog_30804	NA	unknown function
UHGV-2020897_6	UniRef90	UniRef90_UPI00189BBCBF	AAA family ATPase	NA
UHGV-2020897_6	eggNOG-mapper	1550091.JROE01000002_gene791	AAA domain (dynein-related subfamily)	NA
UHGV-2020897_6	PADLOC	REase_II_00149	Type II restriction enzyme	RM
UHGV-2020897_6	Pfam	PF07728	AAA domain (dynein-related subfamily)	AAA_5
UHGV-2020897_6	COG	COG1401	5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB	NA
UHGV-2020897_6	Structural annotation	PF07728, MF_00016, NF008457, COG1401	NA	NA
UHGV-2020897_7	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2020897_7	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2020897_7	UniRef90	UniRef90_UPI0018992694	DNA cytosine methyltransferase	NA
UHGV-2020897_7	eggNOG-mapper	1550091.JROE01000002_gene790	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-2020897_7	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-2020897_7	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2020897_7	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2020897_7	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2020897_7	Structural annotation	PF00145, MF_01011, TIGR00675, COG0270	NA	NA
UHGV-2020897_8	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2020897_8	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2020897_8	UniRef90	UniRef90_UPI00189C3045	site-specific DNA-methyltransferase	NA
UHGV-2020897_8	eggNOG-mapper	1334046.AYTB01000025_gene1717	DNA methylase	NA
UHGV-2020897_8	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-2020897_8	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2020897_8	COG	COG2189	Adenine specific DNA methylase Mod	NA
UHGV-2020897_8	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-2020897_12	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-2020897_12	eggNOG-mapper	679937.Bcop_1259	NA	NA
UHGV-2020897_12	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2020897_12	Structural annotation	PF01978, MF_01819, NF041230, COG3355	NA	NA
UHGV-2020897_13	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2020897_13	PHROG	phrog_3277	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2020897_13	UniRef90	UniRef90_UPI00117E638E	ATP-binding protein	NA
UHGV-2020897_13	eggNOG-mapper	679189.HMPREF9019_0921	NA	NA
UHGV-2020897_13	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA
UHGV-2020897_16	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2020897_16	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2020897_16	UniRef90	UniRef90_UPI000B89D16C	HNH endonuclease	NA
UHGV-2020897_16	eggNOG-mapper	1185876.BN8_03644	HNH nucleases	NA
UHGV-2020897_16	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2020897_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2020897_17	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2020897_17	PHROG	phrog_1	integrase	integration and excision
UHGV-2020897_17	UniRef90	UniRef90_A0A143XDF3	Tyrosine recombinase XerD	NA
UHGV-2020897_17	eggNOG-mapper	1433126.BN938_0085	Belongs to the 'phage' integrase family	NA
UHGV-2020897_17	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-2020897_17	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2020897_17	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2020897_17	Structural annotation	PF00589, PF02899, MF_01807, NF001399, COG4974	NA	NA
UHGV-2020897_18	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2020897_18	UniRef90	UniRef90_A0A143XD88	Phage terminase, small subunit	NA
UHGV-2020897_18	eggNOG-mapper	1433126.BN938_0084	Phage terminase, small subunit	NA
UHGV-2020897_18	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2020897_18	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-2020897_18	COG	COG3747	Phage terminase, small subunit	NA
UHGV-2020897_18	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2020897_19	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2020897_19	UniRef90	UniRef90_A0A143XCA5	Phage Terminase	NA
UHGV-2020897_19	eggNOG-mapper	2754.EH55_13175	Terminase	NA
UHGV-2020897_19	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2020897_19	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2020897_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2020897_19	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2020897_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-2020897_21	UniRef90	UniRef90_A0A143XDN2	Phage portal protein	NA
UHGV-2020897_21	eggNOG-mapper	573061.Clocel_0780	Phage portal protein, HK97 family	NA
UHGV-2020897_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2020897_21	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2020897_21	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2020897_21	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2020897_22	KOfam	K06904	NA	NA
UHGV-2020897_22	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2020897_22	UniRef90	UniRef90_A0A143XCB6	Caudovirus prohead protease	NA
UHGV-2020897_22	eggNOG-mapper	1234679.BN424_3291	Prohead protease, HK97 family	NA
UHGV-2020897_22	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2020897_22	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2020897_22	COG	COG3740	Phage head maturation protease	NA
UHGV-2020897_22	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2020897_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-2020897_23	UniRef90	UniRef90_A0A143XFV8	Phage capsid family protein	NA
UHGV-2020897_23	eggNOG-mapper	1433126.BN938_0523	Phage capsid family	NA
UHGV-2020897_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2020897_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2020897_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2020897_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2020897_24	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2020897_24	UniRef90	UniRef90_A0A143XDY0	Phage gp6-like head-tail connector protein	NA
UHGV-2020897_24	eggNOG-mapper	460265.Mnod_2609	Phage gp6-like head-tail connector protein	NA
UHGV-2020897_24	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2020897_24	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2020897_24	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2020897_25	UniRef90	UniRef90_A0A143XDY5	Phage head-tail joining protein	NA
UHGV-2020897_25	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2020897_25	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2020897_25	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2020897_26	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2020897_26	UniRef90	UniRef90_UPI001B3652B9	HK97 gp10 family phage protein	NA
UHGV-2020897_26	eggNOG-mapper	1433126.BN938_0520	NA	NA
UHGV-2020897_26	Structural annotation	PF06763, TIGR01725	NA	NA
UHGV-2020897_27	Structural annotation	PF11367	NA	NA
UHGV-2020897_28	PHROG	phrog_1407	major tail protein	tail
UHGV-2020897_28	UniRef90	UniRef90_A0A143XDZ3	Phage major tail protein 2	NA
UHGV-2020897_28	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-2020897_28	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2020897_29	Structural annotation	PF11836	NA	NA
UHGV-2020897_32	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-2020897_32	PHROG	phrog_56	DNA methyltransferase	other
UHGV-2020897_32	UniRef90	UniRef90_A0A143XE03	Modification methylase DpnIIA	NA
UHGV-2020897_32	eggNOG-mapper	1433126.BN938_0136	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-2020897_32	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-2020897_32	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-2020897_32	COG	COG0338	DNA-adenine methylase	NA
UHGV-2020897_32	Structural annotation	PF02086, MF_00934, TIGR00571, COG0338	NA	NA
UHGV-2020897_33	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2020897_33	PHROG	phrog_363	DNA methyltransferase	other
UHGV-2020897_33	UniRef90	UniRef90_UPI00101D0A4F	DNA cytosine methyltransferase	NA
UHGV-2020897_33	eggNOG-mapper	445970.ALIPUT_01612	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-2020897_33	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-2020897_33	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2020897_33	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2020897_33	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2020897_33	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-2020897_35	Structural annotation	PF02185	NA	NA
UHGV-2020897_36	UniRef90	UniRef90_A0A143XDD0	NA	NA
UHGV-2020897_36	Pfam	PF14192	NA	DUF4314
UHGV-2020897_36	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-2020897_36	Structural annotation	PF14192, NF007106	NA	NA
UHGV-2020897_37	PHROG	phrog_30639	NA	unknown function
UHGV-2020897_37	eggNOG-mapper	1433126.BN938_0140	NA	NA
UHGV-2020897_37	Structural annotation	PF18975, PF10916, MF_01282, NF000022, COG4257, COG4379	NA	NA
UHGV-2020897_39	PHROG	phrog_873	endolysin	head and packaging
UHGV-2020897_39	UniRef90	UniRef90_UPI00189C60BB	structural protein P5	NA
UHGV-2020897_39	eggNOG-mapper	1203611.KB894543_gene1678	NA	NA
UHGV-2020897_40	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-2020897_40	UniRef90	UniRef90_UPI000C15DCE7	phage tail length tape measure family protein	NA
UHGV-2020897_40	eggNOG-mapper	1433126.BN938_0515	domain protein	NA
UHGV-2020897_40	COG	COG5283	Phage-related tail protein	NA
UHGV-2020897_40	Structural annotation	PF05537, TIGR01760, COG3941	NA	NA
UHGV-2020897_41	eggNOG-mapper	997884.HMPREF1068_04162	NA	NA
UHGV-2020897_42	PHROG	phrog_38044	NA	unknown function
UHGV-2020897_42	eggNOG-mapper	445970.ALIPUT_01638	cellulase activity	NA
UHGV-2020897_42	COG	COG4926	Phage-related protein	NA
UHGV-2020897_44	PHROG	phrog_9915	NA	unknown function
UHGV-2020897_44	UniRef90	UniRef90_UPI00101CDCED	BspA family leucine-rich repeat surface protein	NA
UHGV-2020897_44	Pfam	PF03382	NA	DUF285
UHGV-2020897_44	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-2020897_44	Structural annotation	PF03382	NA	NA
UHGV-2020897_45	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2020897_45	PHROG	phrog_1	integrase	integration and excision
UHGV-2020897_45	UniRef90	UniRef90_A0A143XCG0	Site-specific tyrosine recombinase XerD	NA
UHGV-2020897_45	eggNOG-mapper	1433126.BN938_0141	Belongs to the 'phage' integrase family	NA
UHGV-2020897_45	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-2020897_45	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-2020897_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2020897_45	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2020897_45	Structural annotation	PF00589, PF13102, PF17293, MF_01808, TIGR02224, COG4974	NA	NA