UHGV-2020961

Genome information

Genome length 25,178 bps

CDS count 36

Completeness 63.43% (medium-quality)

geNomad score 0.9612

Prediction confidence Confident

Genome information
Genome ID	UHGV-2020961
vOTU ID	vOTU-027030
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029206\|Ga0167480_100025\|provirus_3_25180
BioSample	SAMEA2737837
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.43% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9612
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.13
Jumbo phage	No

Genome content
Genome length	25,178 bps
GC content	50.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	93.74%
Average CDS length	660.58 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2020961_2	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2020961_2	UniRef90	UniRef90_A0A1C7PDG0	p-loop containing nucleoside triphosphate hydrolase	NA
UHGV-2020961_2	eggNOG-mapper	1121090.KB894686_gene3011	Phage terminase large subunit	NA
UHGV-2020961_2	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-2020961_2	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG4373	NA	NA
UHGV-2020961_3	PHROG	phrog_1482	terminase small subunit	head and packaging
UHGV-2020961_3	UniRef90	UniRef90_UPI000C9ACC23	ubiquitin carboxyl-hydrolase	NA
UHGV-2020961_3	eggNOG-mapper	1072685.IX83_07125	NA	NA
UHGV-2020961_3	Pfam	PF20901	Bacteriophage Sf6, terminase small subunit-like	Sf6_terminase
UHGV-2020961_3	Structural annotation	PF20901	NA	NA
UHGV-2020961_5	UniRef90	UniRef90_A0A4Q5IVQ1	ADPrib_exo_Tox domain-containing protein	NA
UHGV-2020961_5	eggNOG-mapper	1123274.KB899418_gene2332	cell adhesion	NA
UHGV-2020961_5	COG	COG2369	NA	NA
UHGV-2020961_7	KOfam	K00604	MTFMT, fmt; methionyl-tRNA formyltransferase [EC:2.1.2.9]	NA
UHGV-2020961_7	PHROG	phrog_9240	cyanobacterial phosphoribosylglycinamide formyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-2020961_7	UniRef90	UniRef90_R7FAH7	Formyl transferase domain protein	NA
UHGV-2020961_7	eggNOG-mapper	439235.Dalk_3539	PFAM Formyl transferase	NA
UHGV-2020961_7	Pfam	PF00551	Formyl transferase	Formyl_trans_N
UHGV-2020961_7	COG	COG0223	Methionyl-tRNA formyltransferase	NA
UHGV-2020961_7	Structural annotation	PF00551, MF_00182, TIGR00460, COG0223	NA	NA
UHGV-2020961_8	KOfam	K07128	NA	NA
UHGV-2020961_8	PHROG	phrog_11143	NA	unknown function
UHGV-2020961_8	UniRef90	UniRef90_A0A6I2R428	ABC transporter ATP-binding protein	NA
UHGV-2020961_8	eggNOG-mapper	1392486.JIAF01000004_gene1948	NA	NA
UHGV-2020961_8	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-2020961_8	COG	COG2401	ABC-type ATPase fused to a predicted acetyltransferase domain	NA
UHGV-2020961_8	Structural annotation	PF12568, MF_01005, MF_02018, NF007480, NF011709, COG4525, COG0456	NA	NA
UHGV-2020961_9	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2020961_9	PHROG	phrog_498	DNA methyltransferase	other
UHGV-2020961_9	UniRef90	UniRef90_UPI000C9C5ADD	ParB/Srx family N-terminal domain-containing protein	NA
UHGV-2020961_9	eggNOG-mapper	411483.FAEPRAA2165_01893	NA	NA
UHGV-2020961_9	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2020961_9	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2020961_9	COG	COG0863	DNA modification methylase	NA
UHGV-2020961_9	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-2020961_11	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2020961_11	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2020961_11	UniRef90	UniRef90_A0A410S8Z8	DNA helicase	NA
UHGV-2020961_11	eggNOG-mapper	349741.Amuc_1377	DnaB-like helicase C terminal domain	NA
UHGV-2020961_11	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2020961_11	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2020961_11	COG	COG0305	Replicative DNA helicase	NA
UHGV-2020961_11	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2020961_13	PHROG	phrog_954	DNA methyltransferase	other
UHGV-2020961_13	UniRef90	UniRef90_A0A410S9A2	Class I SAM-dependent methyltransferase	NA
UHGV-2020961_13	eggNOG-mapper	1395513.P343_12775	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-2020961_13	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-2020961_13	Pfam	PF13649	Methyltransferase domain	Methyltransf_25
UHGV-2020961_13	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-2020961_13	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-2020961_13	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-2020961_16	PHROG	phrog_3136	NA	unknown function
UHGV-2020961_16	UniRef90	UniRef90_UPI001C02F5BC	ASCH domain-containing protein	NA
UHGV-2020961_16	eggNOG-mapper	1151117.AJLF01000002_gene99	ASCH	NA
UHGV-2020961_16	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-2020961_17	Structural annotation	MF_01326_A, NF007260, NF005100	NA	NA
UHGV-2020961_19	Structural annotation	PF17516	NA	NA
UHGV-2020961_20	KOfam	K01159	ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]	NA
UHGV-2020961_20	PHROG	phrog_159	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2020961_20	UniRef90	UniRef90_A0A7G6DSN7	Crossover junction endodeoxyribonuclease RuvC	NA
UHGV-2020961_20	eggNOG-mapper	367299.JOEE01000001_gene1963	NA	NA
UHGV-2020961_20	Pfam	PF02075	Crossover junction endodeoxyribonuclease RuvC	RuvC
UHGV-2020961_20	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-2020961_22	UniRef90	UniRef90_A0A410S925	NA	NA
UHGV-2020961_22	eggNOG-mapper	1403819.BATR01000122_gene4275	NA	NA
UHGV-2020961_22	Pfam	PF10926	NA	DUF2800
UHGV-2020961_23	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2020961_23	UniRef90	UniRef90_A0A8F1HQF8	ATP-binding protein	NA
UHGV-2020961_23	eggNOG-mapper	1410624.JNKK01000055_gene2198	AAA domain	NA
UHGV-2020961_23	Pfam	PF13479	AAA domain	AAA_24
UHGV-2020961_23	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2020961_29	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2020961_29	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2020961_29	UniRef90	UniRef90_A0A4Q5ITN5	Peptidase_S24 domain-containing protein	NA
UHGV-2020961_29	eggNOG-mapper	349741.Amuc_1794	Peptidase S24-like	NA
UHGV-2020961_29	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2020961_29	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2020961_29	Structural annotation	PF00717, PF01381, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-2020961_30	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2020961_30	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2020961_30	UniRef90	UniRef90_UPI0009C32251	DNA cytosine methyltransferase	NA
UHGV-2020961_30	eggNOG-mapper	411470.RUMGNA_02366	C-5 cytosine-specific DNA methylase	NA
UHGV-2020961_30	PADLOC	MTase_II_00141	Type II methyltransferase	RM
UHGV-2020961_30	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2020961_30	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2020961_30	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2020961_30	Structural annotation	PF00145, MF_02237, TIGR00675, COG0270	NA	NA
UHGV-2020961_31	PHROG	phrog_2598	NA	unknown function
UHGV-2020961_31	UniRef90	UniRef90_UPI000C9A3F38	NA	NA
UHGV-2020961_31	eggNOG-mapper	1262915.BN574_00663	NA	NA
UHGV-2020961_31	Pfam	PF03235	NA	DUF262
UHGV-2020961_31	COG	COG1479	NA	NA
UHGV-2020961_32	PHROG	phrog_15536	NA	unknown function
UHGV-2020961_32	UniRef90	UniRef90_UPI000C9A50D2	HEPN domain-containing protein	NA
UHGV-2020961_32	eggNOG-mapper	240292.Ava_3593	NA	NA
UHGV-2020961_32	Pfam	PF18735	RiboL-PSP-HEPN	HEPN_RiboL-PSP
UHGV-2020961_33	eggNOG-mapper	349741.Amuc_1794	Peptidase S24-like	NA
UHGV-2020961_33	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2020961_34	UniRef90	UniRef90_A0A410SEH8	YHYH domain-containing protein	NA
UHGV-2020961_34	eggNOG-mapper	1430440.MGMSRv2_1007	nuclease	NA
UHGV-2020961_34	NCBIFam	NF033223.2	YHYH domain-containing protein	NA
UHGV-2020961_34	COG	COG1525	Endonuclease YncB, thermonuclease family	NA
UHGV-2020961_35	Pfam	PF09458	H-type lectin domain	H_lectin
UHGV-2020961_36	KOfam	K14059	int; integrase	NA
UHGV-2020961_36	PHROG	phrog_1	integrase	integration and excision
UHGV-2020961_36	UniRef90	UniRef90_A0A352SHK7	Tyr recombinase domain-containing protein (Fragment)	NA
UHGV-2020961_36	eggNOG-mapper	349741.Amuc_1659	Belongs to the 'phage' integrase family	NA
UHGV-2020961_36	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2020961_36	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2020961_36	Structural annotation	PF00589, PF13102, MF_01807, TIGR02224, COG4974	NA	NA