UHGV-2021996

Genome information

Genome length 61,054 bps

CDS count 88

Completeness 99.90% (high-quality)

geNomad score 0.9772

Prediction confidence Confident

Genome information
Genome ID	UHGV-2021996
vOTU ID	vOTU-010833
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029134\|Ga0168775_100080\|provirus_21799_148902
BioSample	SAMEA2737756
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	33
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9772
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.85
Jumbo phage	No

Genome content
Genome length	61,054 bps
GC content	51.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	88
CDS density	93.63%
Average CDS length	652.40 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2021996_1	KOfam	K14059	int; integrase	NA
UHGV-2021996_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2021996_1	UniRef90	UniRef90_A0A2J4JS71	Integrase	NA
UHGV-2021996_1	eggNOG-mapper	428125.CLOLEP_01345	Belongs to the 'phage' integrase family	NA
UHGV-2021996_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2021996_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2021996_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2021996_2	PHROG	phrog_6058	NA	unknown function
UHGV-2021996_2	UniRef90	UniRef90_A0A4Q7P3C7	Prolyl-tRNA synthetase	NA
UHGV-2021996_2	eggNOG-mapper	665956.HMPREF1032_00623	NA	NA
UHGV-2021996_3	PHROG	phrog_11237	NA	unknown function
UHGV-2021996_3	eggNOG-mapper	742740.HMPREF9474_02326	NA	NA
UHGV-2021996_7	PHROG	phrog_15866	NA	unknown function
UHGV-2021996_7	eggNOG-mapper	742740.HMPREF9474_02324	NA	NA
UHGV-2021996_8	PHROG	phrog_17256	NA	unknown function
UHGV-2021996_8	eggNOG-mapper	742733.HMPREF9469_05087	NA	NA
UHGV-2021996_12	PHROG	phrog_18243	NA	unknown function
UHGV-2021996_12	UniRef90	UniRef90_A0A416KK26	CTP synthase	NA
UHGV-2021996_14	PHROG	phrog_2152	NA	unknown function
UHGV-2021996_14	UniRef90	UniRef90_UPI001C0099E2	NA	NA
UHGV-2021996_14	eggNOG-mapper	742740.HMPREF9474_02314	NA	NA
UHGV-2021996_14	Pfam	PF19880	NA	DUF6353
UHGV-2021996_14	Structural annotation	PF19880	NA	NA
UHGV-2021996_17	PHROG	phrog_2152	NA	unknown function
UHGV-2021996_17	UniRef90	UniRef90_UPI001D065195	NA	NA
UHGV-2021996_17	eggNOG-mapper	428125.CLOLEP_01362	NA	NA
UHGV-2021996_17	Pfam	PF19880	NA	DUF6353
UHGV-2021996_17	Structural annotation	PF19880	NA	NA
UHGV-2021996_19	PHROG	phrog_4079	NA	unknown function
UHGV-2021996_19	eggNOG-mapper	742740.HMPREF9474_02312	NA	NA
UHGV-2021996_20	PHROG	phrog_4079	NA	unknown function
UHGV-2021996_20	eggNOG-mapper	742740.HMPREF9474_02312	NA	NA
UHGV-2021996_21	PHROG	phrog_2152	NA	unknown function
UHGV-2021996_21	UniRef90	UniRef90_UPI00156DA7B3	NA	NA
UHGV-2021996_21	eggNOG-mapper	742740.HMPREF9474_02310	NA	NA
UHGV-2021996_21	Pfam	PF19880	NA	DUF6353
UHGV-2021996_21	Structural annotation	PF19880	NA	NA
UHGV-2021996_22	PHROG	phrog_14968	NA	unknown function
UHGV-2021996_22	UniRef90	UniRef90_A0A2J4JS60	Histidine kinase	NA
UHGV-2021996_22	eggNOG-mapper	742733.HMPREF9469_05071	NA	NA
UHGV-2021996_23	PHROG	phrog_4695	NA	unknown function
UHGV-2021996_23	eggNOG-mapper	665950.HMPREF1025_01953	NA	NA
UHGV-2021996_24	PHROG	phrog_4678	NA	unknown function
UHGV-2021996_24	eggNOG-mapper	665950.HMPREF1025_01954	NA	NA
UHGV-2021996_26	PHROG	phrog_4210	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2021996_26	UniRef90	UniRef90_A0A329UQF2	SF3 helicase domain-containing protein	NA
UHGV-2021996_26	eggNOG-mapper	428125.CLOLEP_01375	DNA polymerase type-B family	NA
UHGV-2021996_26	Pfam	PF19263	NA	DUF5906
UHGV-2021996_26	Structural annotation	PF00136, PF05272, PF09250, MF_04100, MF_00016, NF005477, NF004420, COG3378, COG0417	NA	NA
UHGV-2021996_27	Structural annotation	PF13938, PF05239, COG1532	NA	NA
UHGV-2021996_29	PHROG	phrog_4787	single strand annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2021996_29	Structural annotation	PF21265, MF_04153	NA	NA
UHGV-2021996_30	UniRef90	UniRef90_A0A6N9P5G0	NA	NA
UHGV-2021996_30	eggNOG-mapper	411473.RUMCAL_00360	NA	NA
UHGV-2021996_30	Structural annotation	PF14359, COG3613	NA	NA
UHGV-2021996_33	Structural annotation	PF12659	NA	NA
UHGV-2021996_35	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2021996_35	UniRef90	UniRef90_A0A7X5EAK7	Helicase C-terminal domain-containing protein	NA
UHGV-2021996_35	eggNOG-mapper	742740.HMPREF9474_02299	Helicase conserved C-terminal domain	NA
UHGV-2021996_35	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2021996_35	Structural annotation	PF02399, MF_01821, NF038318, COG0553	NA	NA
UHGV-2021996_38	PHROG	phrog_18716	NA	unknown function
UHGV-2021996_38	UniRef90	UniRef90_UPI001C00DD4A	NA	NA
UHGV-2021996_38	eggNOG-mapper	665959.HMPREF1013_00856	NA	NA
UHGV-2021996_38	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-2021996_39	PHROG	phrog_19852	NA	unknown function
UHGV-2021996_39	eggNOG-mapper	742740.HMPREF9474_02297	NA	NA
UHGV-2021996_44	PHROG	phrog_16725	NA	unknown function
UHGV-2021996_48	Structural annotation	PF14120	NA	NA
UHGV-2021996_50	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-2021996_50	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-2021996_50	UniRef90	UniRef90_A0A3E2V7T8	FAD-dependent thymidylate synthase	NA
UHGV-2021996_50	eggNOG-mapper	397291.C804_00906	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-2021996_50	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-2021996_50	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-2021996_50	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-2021996_50	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-2021996_51	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-2021996_51	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-2021996_51	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-2021996_55	eggNOG-mapper	742740.HMPREF9474_02280	NA	NA
UHGV-2021996_55	Structural annotation	PF01870, NF040854, COG1591	NA	NA
UHGV-2021996_56	PHROG	phrog_3953	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2021996_56	UniRef90	UniRef90_A0A7X5EAL7	NA	NA
UHGV-2021996_56	eggNOG-mapper	742740.HMPREF9474_02279	NA	NA
UHGV-2021996_56	Pfam	PF10926	NA	DUF2800
UHGV-2021996_56	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2021996_57	PHROG	phrog_4291	RNA-dependent RNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2021996_57	UniRef90	UniRef90_A0A2J4JS19	Phage tail protein	NA
UHGV-2021996_57	eggNOG-mapper	742733.HMPREF9469_05039	NA	NA
UHGV-2021996_57	Pfam	PF09339	IclR helix-turn-helix domain	HTH_IclR
UHGV-2021996_57	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-2021996_57	Structural annotation	PF05183	NA	NA
UHGV-2021996_58	PHROG	phrog_4303	NA	unknown function
UHGV-2021996_58	eggNOG-mapper	665956.HMPREF1032_00666	NA	NA
UHGV-2021996_60	PHROG	phrog_4259	NA	unknown function
UHGV-2021996_60	UniRef90	UniRef90_D4P7B9	Gp008	NA
UHGV-2021996_60	eggNOG-mapper	742740.HMPREF9474_02276	NA	NA
UHGV-2021996_62	PHROG	phrog_4321	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2021996_62	eggNOG-mapper	478749.BRYFOR_08530	NA	NA
UHGV-2021996_63	PHROG	phrog_1454	NA	unknown function
UHGV-2021996_64	PHROG	phrog_918	NA	unknown function
UHGV-2021996_64	UniRef90	UniRef90_UPI001CBAD829	NA	NA
UHGV-2021996_64	eggNOG-mapper	1140001.I571_01827	NA	NA
UHGV-2021996_64	Pfam	PF19791	NA	DUF6275
UHGV-2021996_64	Structural annotation	PF19791	NA	NA
UHGV-2021996_65	PHROG	phrog_4247	virion structural protein	head and packaging
UHGV-2021996_65	UniRef90	UniRef90_A0A373C8E1	Structural protein	NA
UHGV-2021996_65	eggNOG-mapper	742733.HMPREF9469_05035	NA	NA
UHGV-2021996_66	PHROG	phrog_19695	NA	unknown function
UHGV-2021996_66	eggNOG-mapper	411462.DORLON_00772	NA	NA
UHGV-2021996_66	Structural annotation	PF19714	NA	NA
UHGV-2021996_67	eggNOG-mapper	1304866.K413DRAFT_4770	PFAM Formylglycine-generating sulfatase enzyme	NA
UHGV-2021996_67	COG	COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	NA
UHGV-2021996_67	Structural annotation	PF10651, COG3470	NA	NA
UHGV-2021996_68	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-2021996_68	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-2021996_68	UniRef90	UniRef90_A0A329UL42	BIG2 domain-containing protein	NA
UHGV-2021996_68	eggNOG-mapper	657322.FPR_13550	Bacterial Ig-like domain (group 2)	NA
UHGV-2021996_68	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2021996_68	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-2021996_68	COG	COG5492	NA	NA
UHGV-2021996_68	Structural annotation	PF02973	NA	NA
UHGV-2021996_69	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-2021996_69	PHROG	phrog_5240	tail fiber protein	tail
UHGV-2021996_69	UniRef90	UniRef90_A0A3E2TYR6	SGNH/GDSL hydrolase family protein	NA
UHGV-2021996_69	eggNOG-mapper	411463.EUBVEN_01828	lipolytic protein G-D-S-L family	NA
UHGV-2021996_69	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-2021996_69	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-2021996_69	Structural annotation	PF16255, NF007819, COG2755	NA	NA
UHGV-2021996_70	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2021996_70	UniRef90	UniRef90_UPI001D05F004	terminase large subunit	NA
UHGV-2021996_70	eggNOG-mapper	742740.HMPREF9474_02272	Phage Terminase	NA
UHGV-2021996_70	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2021996_70	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2021996_70	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2021996_70	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2021996_71	PHROG	phrog_29396	NA	unknown function
UHGV-2021996_71	eggNOG-mapper	1203602.HMPREF1527_00787	NA	NA
UHGV-2021996_73	PHROG	phrog_7021	NA	unknown function
UHGV-2021996_73	eggNOG-mapper	428125.CLOLEP_01408	NA	NA
UHGV-2021996_74	PHROG	phrog_12	portal protein	head and packaging
UHGV-2021996_74	UniRef90	UniRef90_UPI001D05DA00	phage portal protein	NA
UHGV-2021996_74	eggNOG-mapper	411460.RUMTOR_01348	Phage portal protein	NA
UHGV-2021996_74	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2021996_74	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2021996_75	KOfam	K06904	NA	NA
UHGV-2021996_75	PHROG	phrog_3270	head maturation protease	head and packaging
UHGV-2021996_75	UniRef90	UniRef90_A0A416KKF2	Phage major capsid protein	NA
UHGV-2021996_75	eggNOG-mapper	691965.D4P7D6_9CAUD	peptidase activity	NA
UHGV-2021996_75	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2021996_75	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2021996_75	Structural annotation	PF04586, PF06673, TIGR01543, TIGR01554, COG3740, COG4653	NA	NA
UHGV-2021996_77	PHROG	phrog_4270	NA	unknown function
UHGV-2021996_77	eggNOG-mapper	428125.CLOLEP_01413	NA	NA
UHGV-2021996_77	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2021996_78	UniRef90	UniRef90_D4P7D8	Structural protein	NA
UHGV-2021996_78	eggNOG-mapper	691965.D4P7D8_9CAUD	NA	NA
UHGV-2021996_78	Structural annotation	PF20765	NA	NA
UHGV-2021996_79	PHROG	phrog_2645	major tail protein	tail
UHGV-2021996_79	UniRef90	UniRef90_A0A644ZQB8	Big_5 domain-containing protein	NA
UHGV-2021996_79	eggNOG-mapper	478749.BRYFOR_08518	NA	NA
UHGV-2021996_79	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-2021996_80	PHROG	phrog_4282	NA	unknown function
UHGV-2021996_80	eggNOG-mapper	478749.BRYFOR_08517	NA	NA
UHGV-2021996_81	PHROG	phrog_4338	NA	unknown function
UHGV-2021996_81	eggNOG-mapper	428125.CLOLEP_01417	NA	NA
UHGV-2021996_82	UniRef90	UniRef90_A0A3E2V879	HK97 gp10 family phage protein	NA
UHGV-2021996_82	eggNOG-mapper	742733.HMPREF9469_05021	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2021996_82	Structural annotation	TIGR01725	NA	NA
UHGV-2021996_83	PHROG	phrog_4372	tail length tape measure protein	tail
UHGV-2021996_83	UniRef90	UniRef90_A0A3F3JTX1	TMP_3 domain-containing protein	NA
UHGV-2021996_83	eggNOG-mapper	478749.BRYFOR_08513	Peptidoglycan-binding domain 1 protein	NA
UHGV-2021996_83	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-2021996_84	PHROG	phrog_3558	tail protein	tail
UHGV-2021996_84	eggNOG-mapper	1111121.HMPREF1247_1242	Prophage endopeptidase tail	NA
UHGV-2021996_84	Pfam	PF19789	NA	DUF6273
UHGV-2021996_84	COG	COG4926	Phage-related protein	NA
UHGV-2021996_84	Structural annotation	PF14594, PF18911, TIGR01665, COG4926	NA	NA
UHGV-2021996_85	UniRef90	UniRef90_B0MAY3	Putative phage tail component domain protein	NA
UHGV-2021996_85	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-2021996_85	COG	COG4722	Phage-related protein YomH	NA
UHGV-2021996_85	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-2021996_86	Structural annotation	PF21602, PF00544, PF13385, NF007517, NF007636	NA	NA
UHGV-2021996_87	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-2021996_87	PHROG	phrog_894	endolysin	lysis
UHGV-2021996_87	UniRef90	UniRef90_A0A2A7AXQ4	Peptidase M15	NA
UHGV-2021996_87	eggNOG-mapper	657322.FPR_13570	Peptidase M15A	NA
UHGV-2021996_87	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-2021996_87	COG	COG3108	NA	NA
UHGV-2021996_87	Structural annotation	PF05951, COG3108	NA	NA
UHGV-2021996_88	PHROG	phrog_1863	NA	unknown function
UHGV-2021996_88	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA