UHGV-2022631

Genome information

Genome length 35,401 bps

CDS count 49

Completeness 91.93% (high-quality)

geNomad score 0.9740

Prediction confidence Confident

Genome information
Genome ID	UHGV-2022631
vOTU ID	vOTU-069000
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029209\|Ga0168673_100237\|provirus_26118_61518
BioSample	SAMEA2737654
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.93% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9740
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.72
Jumbo phage	No

Genome content
Genome length	35,401 bps
GC content	58.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	92.59%
Average CDS length	672.49 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2022631_1	KOfam	K14059	int; integrase	NA
UHGV-2022631_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2022631_1	UniRef90	UniRef90_UPI00195B6EEA	site-specific integrase	NA
UHGV-2022631_1	eggNOG-mapper	1235797.C816_00779	Phage integrase family	NA
UHGV-2022631_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2022631_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2022631_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2022631_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2022631_2	KOfam	K19370	DNAJC22; DnaJ homolog subfamily C member 22	NA
UHGV-2022631_2	PHROG	phrog_10292	NA	unknown function
UHGV-2022631_2	UniRef90	UniRef90_UPI001916763D	TM2 domain-containing protein	NA
UHGV-2022631_2	eggNOG-mapper	665956.HMPREF1032_00562	TM2 domain	NA
UHGV-2022631_2	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-2022631_2	Pfam	PF05154	TM2 domain	TM2
UHGV-2022631_2	COG	COG2314	NA	NA
UHGV-2022631_2	Structural annotation	PF05154, PF12773, MF_00788, NF003161	NA	NA
UHGV-2022631_3	UniRef90	UniRef90_UPI001C3C137B	NA	NA
UHGV-2022631_3	Pfam	PF12686	NA	DUF3800
UHGV-2022631_3	Structural annotation	TIGR00729, COG1039	NA	NA
UHGV-2022631_4	PHROG	phrog_87	metallo-protease	other
UHGV-2022631_4	UniRef90	UniRef90_D1PLA2	Peptidase_M78 domain-containing protein	NA
UHGV-2022631_4	eggNOG-mapper	411471.SUBVAR_05140	NA	NA
UHGV-2022631_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2022631_5	UniRef90	UniRef90_UPI001F387172	helix-turn-helix domain-containing protein	NA
UHGV-2022631_5	eggNOG-mapper	742738.HMPREF9460_04037	Transcriptional	NA
UHGV-2022631_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2022631_6	UniRef90	UniRef90_D9R8Y9	DNA binding domain protein, excisionase family	NA
UHGV-2022631_6	eggNOG-mapper	610130.Closa_1362	Helix-turn-helix domain	NA
UHGV-2022631_6	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2022631_6	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-2022631_6	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-2022631_9	Structural annotation	PF00227, MF_02113_A, TIGR03634, COG0638	NA	NA
UHGV-2022631_10	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-2022631_10	UniRef90	UniRef90_UPI000A0213FB	helix-turn-helix domain-containing protein	NA
UHGV-2022631_10	Pfam	PF08667	BetR domain	BetR
UHGV-2022631_10	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2022631_11	UniRef90	UniRef90_A0A367GHD7	HTH_17 domain-containing protein	NA
UHGV-2022631_11	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2022631_13	Structural annotation	PF12957	NA	NA
UHGV-2022631_15	PHROG	phrog_1733	NA	unknown function
UHGV-2022631_15	UniRef90	UniRef90_UPI00196846D9	cell envelope integrity protein TolA	NA
UHGV-2022631_15	eggNOG-mapper	665956.HMPREF1032_03597	DNA binding	NA
UHGV-2022631_15	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2022631_15	Structural annotation	PF03677	NA	NA
UHGV-2022631_16	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-2022631_16	PHROG	phrog_1499	NA	unknown function
UHGV-2022631_16	UniRef90	UniRef90_A0A367GHQ5	Chromosome segregation protein SMC	NA
UHGV-2022631_16	eggNOG-mapper	1235798.C817_04766	AAA ATPase domain	NA
UHGV-2022631_16	Pfam	PF13476	AAA domain	AAA_23
UHGV-2022631_16	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2022631_16	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-2022631_17	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2022631_17	UniRef90	UniRef90_UPI00122C2B12	ATP-binding protein	NA
UHGV-2022631_17	eggNOG-mapper	1232449.BAHV02000008_gene618	AAA domain	NA
UHGV-2022631_17	Pfam	PF13479	AAA domain	AAA_24
UHGV-2022631_17	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-2022631_18	PHROG	phrog_2698	NA	unknown function
UHGV-2022631_18	UniRef90	UniRef90_A0A367GFE7	NA	NA
UHGV-2022631_18	eggNOG-mapper	294382.Q5YA95_9CAUD	NA	NA
UHGV-2022631_18	Structural annotation	PF05037	NA	NA
UHGV-2022631_20	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-2022631_20	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2022631_20	UniRef90	UniRef90_A0A367GH68	DEAD/DEAH box helicase	NA
UHGV-2022631_20	eggNOG-mapper	610130.Closa_1369	DEAD-like helicases superfamily	NA
UHGV-2022631_20	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2022631_20	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2022631_20	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2022631_20	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2022631_20	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-2022631_21	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-2022631_21	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2022631_21	UniRef90	UniRef90_A0A367GFF7	DNA primase	NA
UHGV-2022631_21	eggNOG-mapper	999413.HMPREF1094_00232	Primase C terminal 2 (PriCT-2)	NA
UHGV-2022631_21	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-2022631_21	Pfam	PF13481	AAA domain	AAA_25
UHGV-2022631_21	COG	COG3598	RecA-family ATPase	NA
UHGV-2022631_21	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-2022631_22	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2022631_22	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2022631_22	UniRef90	UniRef90_A0A367GHC7	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2022631_22	eggNOG-mapper	394503.Ccel_3302	endodeoxyribonuclease RusA	NA
UHGV-2022631_22	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2022631_22	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2022631_22	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2022631_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2022631_26	UniRef90	UniRef90_A0A353BRJ1	Sigma70_r4 domain-containing protein	NA
UHGV-2022631_26	eggNOG-mapper	411471.SUBVAR_05843	NA	NA
UHGV-2022631_26	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-2022631_27	PHROG	phrog_1281	NA	unknown function
UHGV-2022631_27	UniRef90	UniRef90_UPI0018AB8273	NA	NA
UHGV-2022631_27	eggNOG-mapper	411459.RUMOBE_01368	Phage-associated protein	NA
UHGV-2022631_27	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-2022631_27	COG	COG3600	NA	NA
UHGV-2022631_27	Structural annotation	PF13274, COG3600	NA	NA
UHGV-2022631_29	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-2022631_29	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-2022631_29	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-2022631_29	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-2022631_29	Structural annotation	PF16677	NA	NA
UHGV-2022631_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2022631_30	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2022631_30	UniRef90	UniRef90_A0A367GH60	PBSX family phage terminase large subunit	NA
UHGV-2022631_30	eggNOG-mapper	1120746.CCNL01000014_gene2093	DNA packaging	NA
UHGV-2022631_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2022631_30	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-2022631_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2022631_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-2022631_30	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2022631_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-2022631_31	UniRef90	UniRef90_A0A367GFE3	Capsid protein	NA
UHGV-2022631_31	eggNOG-mapper	663278.Ethha_0090	NA	NA
UHGV-2022631_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2022631_31	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2022631_32	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2022631_32	UniRef90	UniRef90_UPI0019583C8A	polymorphic toxin type 50 domain-containing protein	NA
UHGV-2022631_32	eggNOG-mapper	748224.HMPREF9436_03339	NA	NA
UHGV-2022631_32	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2022631_32	Pfam	PF18810	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
UHGV-2022631_32	COG	COG2369	NA	NA
UHGV-2022631_32	Structural annotation	PF06152	NA	NA
UHGV-2022631_33	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2022631_33	UniRef90	UniRef90_UPI00195B7610	phage scaffolding protein	NA
UHGV-2022631_33	eggNOG-mapper	663278.Ethha_0093	NA	NA
UHGV-2022631_33	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2022631_33	Structural annotation	PF06810	NA	NA
UHGV-2022631_34	PHROG	phrog_10	major head protein	head and packaging
UHGV-2022631_34	UniRef90	UniRef90_A0A367GHJ2	Phage major capsid protein	NA
UHGV-2022631_34	eggNOG-mapper	1120998.AUFC01000030_gene2236	Phage capsid family	NA
UHGV-2022631_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2022631_34	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2022631_34	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2022631_34	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2022631_35	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2022631_35	eggNOG-mapper	663278.Ethha_0495	NA	NA
UHGV-2022631_36	eggNOG-mapper	411471.SUBVAR_06991	NA	NA
UHGV-2022631_36	Pfam	PF20536	NA	DUF6751
UHGV-2022631_36	Structural annotation	PF20536	NA	NA
UHGV-2022631_37	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2022631_37	UniRef90	UniRef90_UPI001958E7C1	minor capsid protein	NA
UHGV-2022631_37	eggNOG-mapper	665956.HMPREF1032_03062	Minor capsid protein	NA
UHGV-2022631_37	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2022631_37	Structural annotation	PF11114	NA	NA
UHGV-2022631_38	PHROG	phrog_3266	tail completion	connector
UHGV-2022631_38	eggNOG-mapper	663278.Ethha_0492	NA	NA
UHGV-2022631_38	Structural annotation	PF12691	NA	NA
UHGV-2022631_39	PHROG	phrog_3099	NA	unknown function
UHGV-2022631_39	eggNOG-mapper	665956.HMPREF1032_03060	NA	NA
UHGV-2022631_39	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-2022631_40	PHROG	phrog_11299	NA	unknown function
UHGV-2022631_40	eggNOG-mapper	665956.HMPREF1032_03059	NA	NA
UHGV-2022631_40	Structural annotation	PF10666	NA	NA
UHGV-2022631_41	PHROG	phrog_706	NA	unknown function
UHGV-2022631_41	UniRef90	UniRef90_UPI0013141117	Gp15 family bacteriophage protein	NA
UHGV-2022631_41	eggNOG-mapper	665956.HMPREF1032_03058	Bacteriophage Gp15 protein	NA
UHGV-2022631_41	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2022631_41	Structural annotation	PF06854	NA	NA
UHGV-2022631_42	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2022631_42	eggNOG-mapper	411471.SUBVAR_06934	tape measure	NA
UHGV-2022631_42	COG	COG5412	Phage-related protein	NA
UHGV-2022631_45	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-2022631_47	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-2022631_47	PHROG	phrog_10030	tail length tape measure protein	tail
UHGV-2022631_47	UniRef90	UniRef90_A0A3D1PRD1	Peptidase_M23 domain-containing protein	NA
UHGV-2022631_47	eggNOG-mapper	670487.Ocepr_1144	PFAM Peptidase family M23	NA
UHGV-2022631_47	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-2022631_47	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-2022631_47	Structural annotation	PF01551, NF040883	NA	NA
UHGV-2022631_48	PHROG	phrog_1863	NA	unknown function
UHGV-2022631_48	eggNOG-mapper	665956.HMPREF1032_03922	NA	NA
UHGV-2022631_49	PHROG	phrog_1129	holin	lysis
UHGV-2022631_49	UniRef90	UniRef90_A0A367FT42	Enolase	NA
UHGV-2022631_49	eggNOG-mapper	1007096.BAGW01000036_gene2663	Phage holin family Hol44, in holin superfamily V	NA
UHGV-2022631_49	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2022631_49	Structural annotation	PF06946	NA	NA