UHGV-2023031

Genome information

Genome length 37,652 bps

CDS count 50

Completeness 70.48% (medium-quality)

geNomad score 0.9603

Prediction confidence Confident

Genome information
Genome ID	UHGV-2023031
vOTU ID	vOTU-016910
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029119\|Ga0168816_100052\|provirus_115634_163389
BioSample	SAMEA2737797
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	70.48% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9603
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.36
Jumbo phage	No

Genome content
Genome length	37,652 bps
GC content	39.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	90.68%
Average CDS length	685.86 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2023031_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2023031_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2023031_1	UniRef90	UniRef90_A0A2N0USL1	Putative PBSX repressor	NA
UHGV-2023031_1	eggNOG-mapper	1292035.H476_1315	Transcriptional	NA
UHGV-2023031_1	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2023031_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2023031_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2023031_3	eggNOG-mapper	500632.CLONEX_01493	NA	NA
UHGV-2023031_5	eggNOG-mapper	1450694.BTS2_3139	NA	NA
UHGV-2023031_6	eggNOG-mapper	1511.CLOST_1271	NA	NA
UHGV-2023031_6	Pfam	PF11554	NA	DUF3232
UHGV-2023031_7	UniRef90	UniRef90_R5E0U4	WYL domain-containing protein	NA
UHGV-2023031_7	eggNOG-mapper	37659.JNLN01000001_gene129	WYL domain	NA
UHGV-2023031_7	PADLOC	pfam13280	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated_signaling	CRISPR-CAS
UHGV-2023031_7	Pfam	PF13280	WYL domain	WYL
UHGV-2023031_7	COG	COG2378	Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains	NA
UHGV-2023031_8	eggNOG-mapper	37659.JNLN01000001_gene128	NA	NA
UHGV-2023031_9	KOfam	K14059	int; integrase	NA
UHGV-2023031_9	PHROG	phrog_1	integrase	integration and excision
UHGV-2023031_9	UniRef90	UniRef90_A0A355TXZ3	Tyr recombinase domain-containing protein (Fragment)	NA
UHGV-2023031_9	eggNOG-mapper	1226322.HMPREF1545_03460	Phage integrase family	NA
UHGV-2023031_9	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2023031_9	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2023031_10	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-2023031_10	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2023031_10	UniRef90	UniRef90_A0A413QHG2	XRE family transcriptional regulator	NA
UHGV-2023031_10	eggNOG-mapper	411471.SUBVAR_07446	helix-turn-helix	NA
UHGV-2023031_10	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2023031_10	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2023031_10	Structural annotation	PF13443, NF041951, COG3655	NA	NA
UHGV-2023031_11	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-2023031_11	PHROG	phrog_56	DNA methyltransferase	other
UHGV-2023031_11	UniRef90	UniRef90_A0A1C6HHY1	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-2023031_11	eggNOG-mapper	742733.HMPREF9469_02855	COG COG0338 Site-specific DNA methylase	NA
UHGV-2023031_11	PADLOC	MTase_II_00080	Type II methyltransferase	RM
UHGV-2023031_11	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-2023031_11	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-2023031_11	COG	COG0338	DNA-adenine methylase	NA
UHGV-2023031_11	Structural annotation	PF02086, MF_00934, TIGR00571, COG0338	NA	NA
UHGV-2023031_12	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2023031_12	PHROG	phrog_20388	endolysin	lysis
UHGV-2023031_12	UniRef90	UniRef90_A0A374N1L8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2023031_12	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2023031_12	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2023031_12	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2023031_12	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2023031_12	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA
UHGV-2023031_13	PHROG	phrog_443	holin	lysis
UHGV-2023031_13	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-2023031_13	eggNOG-mapper	1235797.C816_04172	Putative lactococcus lactis phage r1t holin	NA
UHGV-2023031_13	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2023031_13	Structural annotation	PF16945	NA	NA
UHGV-2023031_15	UniRef90	UniRef90_A0A1C6HHE5	BppU_N domain-containing protein	NA
UHGV-2023031_15	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-2023031_15	Structural annotation	PF10651, PF08931, TIGR02268	NA	NA
UHGV-2023031_16	PHROG	phrog_11105	NA	unknown function
UHGV-2023031_18	PHROG	phrog_18110	NA	unknown function
UHGV-2023031_18	UniRef90	UniRef90_A0A373KYA3	Prophage_tail domain-containing protein	NA
UHGV-2023031_18	eggNOG-mapper	1280689.AUJC01000007_gene3306	Phage minor structural protein	NA
UHGV-2023031_18	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2023031_18	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2023031_18	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-2023031_18	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-2023031_19	UniRef90	UniRef90_A0A1G4WVH7	Phage-related protein	NA
UHGV-2023031_19	eggNOG-mapper	1347392.CCEZ01000045_gene7	phage tail	NA
UHGV-2023031_19	COG	COG4722	Phage-related protein YomH	NA
UHGV-2023031_19	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-2023031_20	PHROG	phrog_19074	NA	unknown function
UHGV-2023031_20	UniRef90	UniRef90_A0A373L0L9	Phage tail tape measure protein	NA
UHGV-2023031_20	eggNOG-mapper	33035.JPJF01000033_gene2265	Phage-related minor tail protein	NA
UHGV-2023031_20	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2023031_20	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2023031_20	COG	COG5283	Phage-related tail protein	NA
UHGV-2023031_20	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2023031_21	PHROG	phrog_37750	NA	unknown function
UHGV-2023031_21	UniRef90	UniRef90_A0A1G4WVI6	Beta-lactamase inhibitor (BLIP)	NA
UHGV-2023031_21	eggNOG-mapper	1280390.CBQR020000086_gene1875	NA	NA
UHGV-2023031_22	PHROG	phrog_706	NA	unknown function
UHGV-2023031_22	UniRef90	UniRef90_A0A1G4WU45	Bacteriophage Gp15 protein	NA
UHGV-2023031_22	eggNOG-mapper	1499683.CCFF01000017_gene2567	Bacteriophage Gp15 protein	NA
UHGV-2023031_22	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2023031_22	Structural annotation	PF06854	NA	NA
UHGV-2023031_23	PHROG	phrog_4450	NA	unknown function
UHGV-2023031_23	UniRef90	UniRef90_A0A373KZ30	AP endonuclease	NA
UHGV-2023031_23	eggNOG-mapper	1280692.AUJL01000004_gene838	NA	NA
UHGV-2023031_23	Pfam	PF20378	NA	DUF6673
UHGV-2023031_23	Structural annotation	PF20378	NA	NA
UHGV-2023031_24	PHROG	phrog_3099	NA	unknown function
UHGV-2023031_24	UniRef90	UniRef90_A0A3P6KYP0	Phage capsid family protein	NA
UHGV-2023031_24	eggNOG-mapper	411490.ANACAC_00772	NA	NA
UHGV-2023031_24	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2023031_25	PHROG	phrog_3266	tail completion	connector
UHGV-2023031_25	UniRef90	UniRef90_A0A373KYC6	Chloramphenicol resistance protein	NA
UHGV-2023031_25	eggNOG-mapper	641112.ACOK01000073_gene2899	NA	NA
UHGV-2023031_25	Structural annotation	PF12691	NA	NA
UHGV-2023031_26	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2023031_26	UniRef90	UniRef90_A0A413QH49	Capsid protein	NA
UHGV-2023031_26	eggNOG-mapper	883114.HMPREF9709_01190	Minor capsid protein	NA
UHGV-2023031_26	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2023031_26	Structural annotation	PF11114	NA	NA
UHGV-2023031_27	PHROG	phrog_3366	NA	unknown function
UHGV-2023031_27	eggNOG-mapper	1151292.QEW_4533	NA	NA
UHGV-2023031_27	Pfam	PF20536	NA	DUF6751
UHGV-2023031_27	Structural annotation	PF20536, TIGR01563, COG1853	NA	NA
UHGV-2023031_28	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2023031_28	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-2023031_29	PHROG	phrog_212	major head protein	head and packaging
UHGV-2023031_29	UniRef90	UniRef90_A0A373KYA5	Phage capsid protein	NA
UHGV-2023031_29	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-2023031_29	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-2023031_30	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2023031_30	UniRef90	UniRef90_UPI001967FAB3	phage scaffolding protein	NA
UHGV-2023031_30	eggNOG-mapper	1401067.HMPREF0872_00300	Phage minor structural protein GP20	NA
UHGV-2023031_30	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2023031_30	Structural annotation	PF06810	NA	NA
UHGV-2023031_31	PHROG	phrog_419	NA	unknown function
UHGV-2023031_31	UniRef90	UniRef90_UPI001E40EA70	PGDYG domain-containing protein	NA
UHGV-2023031_31	eggNOG-mapper	203119.Cthe_2457	NA	NA
UHGV-2023031_31	Pfam	PF14083	PGDYG protein	PGDYG
UHGV-2023031_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2023031_33	UniRef90	UniRef90_A0A373KZU7	Capsid protein	NA
UHGV-2023031_33	eggNOG-mapper	641112.ACOK01000073_gene2890	NA	NA
UHGV-2023031_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2023031_33	COG	COG2369	NA	NA
UHGV-2023031_33	Structural annotation	PF06152	NA	NA
UHGV-2023031_34	PHROG	phrog_533	portal protein	head and packaging
UHGV-2023031_34	UniRef90	UniRef90_A0A3D0XCF1	Phage capsid protein	NA
UHGV-2023031_34	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-2023031_34	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2023031_34	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2023031_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2023031_35	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2023031_35	UniRef90	UniRef90_A0A373L0G3	PBSX family phage terminase large subunit	NA
UHGV-2023031_35	eggNOG-mapper	693746.OBV_18030	Phage terminase large subunit	NA
UHGV-2023031_35	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2023031_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2023031_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-2023031_35	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2023031_38	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-2023031_38	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-2023031_38	UniRef90	UniRef90_A0A413QHD3	NGN domain-containing protein	NA
UHGV-2023031_38	eggNOG-mapper	1123489.AUAN01000019_gene1519	Participates in transcription elongation, termination and antitermination	NA
UHGV-2023031_38	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-2023031_38	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-2023031_38	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-2023031_39	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-2023031_39	UniRef90	UniRef90_A0A373L007	NA	NA
UHGV-2023031_39	eggNOG-mapper	411902.CLOBOL_06314	NA	NA
UHGV-2023031_39	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-2023031_39	Structural annotation	PF11985	NA	NA
UHGV-2023031_40	PHROG	phrog_25462	NA	unknown function
UHGV-2023031_40	UniRef90	UniRef90_A0A413QHC4	Type VI secretion protein	NA
UHGV-2023031_40	eggNOG-mapper	1160721.RBI_II00547	NA	NA
UHGV-2023031_40	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-2023031_42	PHROG	phrog_532	late transcriptional activator	transcription regulation
UHGV-2023031_42	UniRef90	UniRef90_A0A373L0N7	Mor domain-containing protein	NA
UHGV-2023031_42	eggNOG-mapper	411483.FAEPRAA2165_03398	Mor transcription activator family	NA
UHGV-2023031_42	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-2023031_42	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-2023031_42	Structural annotation	PF08765, NF040785, COG5566	NA	NA
UHGV-2023031_43	PHROG	phrog_286	NA	unknown function
UHGV-2023031_43	UniRef90	UniRef90_A0A373KYV3	NA	NA
UHGV-2023031_43	eggNOG-mapper	552398.HMPREF0866_03127	NA	NA
UHGV-2023031_43	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-2023031_43	Structural annotation	PF06252	NA	NA
UHGV-2023031_44	eggNOG-mapper	645991.Sgly_0760	NA	NA
UHGV-2023031_45	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-2023031_45	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-2023031_45	UniRef90	UniRef90_A0A413QH66	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-2023031_45	eggNOG-mapper	742733.HMPREF9469_02890	toxin-antitoxin pair type II binding	NA
UHGV-2023031_45	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-2023031_45	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-2023031_45	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-2023031_47	PHROG	phrog_5671	NA	unknown function
UHGV-2023031_47	eggNOG-mapper	293826.Amet_0399	NA	NA
UHGV-2023031_49	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-2023031_49	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-2023031_49	UniRef90	UniRef90_A0A413QHD1	AAA domain-containing protein	NA
UHGV-2023031_49	eggNOG-mapper	1160721.RBI_II00554	AAA domain	NA
UHGV-2023031_49	Pfam	PF13401	AAA domain	AAA_22
UHGV-2023031_49	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-2023031_49	Structural annotation	PF13401, MF_01407, TIGR03015, COG2842	NA	NA
UHGV-2023031_50	PHROG	phrog_310	transposase	integration and excision
UHGV-2023031_50	UniRef90	UniRef90_A0A413QHZ6	MerR family transcriptional regulator	NA
UHGV-2023031_50	eggNOG-mapper	445972.ANACOL_00518	Mu transposase, C-terminal	NA
UHGV-2023031_50	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-2023031_50	Pfam	PF09039	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
UHGV-2023031_50	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-2023031_50	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-2023031_50	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA