UHGV-2023347

Genome information

Genome length 30,342 bps

CDS count 44

Completeness 87.10% (medium-quality)

geNomad score 0.9741

Prediction confidence Confident

Genome information
Genome ID	UHGV-2023347
vOTU ID	vOTU-017580
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029230\|Ga0168685_100463\|provirus_365_35695
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.10% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	11
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9741
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.31
Jumbo phage	No

Genome content
Genome length	30,342 bps
GC content	57.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	93.24%
Average CDS length	646.09 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2023347_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2023347_1	PHROG	phrog_95	integrase	integration and excision
UHGV-2023347_1	UniRef90	UniRef90_A0A2H0SF92	Recombinase family protein (Fragment)	NA
UHGV-2023347_1	eggNOG-mapper	1123288.SOV_2c04060	Resolvase, N terminal domain	NA
UHGV-2023347_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-2023347_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2023347_2	PHROG	phrog_1129	holin	lysis
UHGV-2023347_2	UniRef90	UniRef90_A0A8J6J3M3	Phage holin family protein	NA
UHGV-2023347_2	eggNOG-mapper	742740.HMPREF9474_03522	NA	NA
UHGV-2023347_2	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2023347_2	Structural annotation	PF06946	NA	NA
UHGV-2023347_3	PHROG	phrog_1863	NA	unknown function
UHGV-2023347_3	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-2023347_3	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-2023347_4	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2023347_4	PHROG	phrog_5182	endolysin	lysis
UHGV-2023347_4	UniRef90	UniRef90_R5AZE6	N-acetylmuramoyl-L-alanine amidase family 2	NA
UHGV-2023347_4	eggNOG-mapper	397288.C806_00777	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-2023347_4	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2023347_4	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2023347_4	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-2023347_5	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-2023347_5	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-2023347_5	eggNOG-mapper	203275.BFO_0575	Bacterial group 2 Ig-like protein	NA
UHGV-2023347_5	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-2023347_5	COG	COG5492	NA	NA
UHGV-2023347_5	Structural annotation	PF02368, PF09423, MF_00575, NF003743, NF005261, COG5492	NA	NA
UHGV-2023347_6	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-2023347_6	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-2023347_7	Structural annotation	PF10651	NA	NA
UHGV-2023347_8	PHROG	phrog_6616	tail protein	tail
UHGV-2023347_8	Structural annotation	PF13550, PF09931, NF033848, COG3500	NA	NA
UHGV-2023347_9	PHROG	phrog_1194	NA	unknown function
UHGV-2023347_9	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2023347_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2023347_10	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-2023347_10	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-2023347_10	COG	COG1511	NA	NA
UHGV-2023347_10	Structural annotation	PF16789, TIGR02473	NA	NA
UHGV-2023347_11	PHROG	phrog_706	NA	unknown function
UHGV-2023347_11	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-2023347_11	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-2023347_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2023347_11	Structural annotation	PF06854	NA	NA
UHGV-2023347_12	PHROG	phrog_11299	NA	unknown function
UHGV-2023347_12	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-2023347_12	Structural annotation	PF10666	NA	NA
UHGV-2023347_13	PHROG	phrog_3099	NA	unknown function
UHGV-2023347_13	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-2023347_13	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-2023347_14	PHROG	phrog_3266	tail completion	connector
UHGV-2023347_14	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-2023347_14	Structural annotation	PF12691	NA	NA
UHGV-2023347_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2023347_15	UniRef90	UniRef90_A0A1H7MNM8	Minor capsid protein	NA
UHGV-2023347_15	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-2023347_15	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2023347_15	Structural annotation	PF11114	NA	NA
UHGV-2023347_16	PHROG	phrog_3366	NA	unknown function
UHGV-2023347_16	Structural annotation	PF20536, COG5614	NA	NA
UHGV-2023347_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2023347_17	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-2023347_18	PHROG	phrog_267	major head protein	head and packaging
UHGV-2023347_18	eggNOG-mapper	1235799.C818_04223	NA	NA
UHGV-2023347_18	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2023347_19	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2023347_19	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-2023347_19	eggNOG-mapper	1125725.HMPREF1325_1331	Phage minor structural protein GP20	NA
UHGV-2023347_19	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2023347_19	Structural annotation	PF06810	NA	NA
UHGV-2023347_20	PHROG	phrog_15041	NA	unknown function
UHGV-2023347_21	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2023347_21	UniRef90	UniRef90_A0A3D4T830	Phage capsid protein	NA
UHGV-2023347_21	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-2023347_21	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2023347_21	COG	COG2369	NA	NA
UHGV-2023347_21	Structural annotation	PF06152	NA	NA
UHGV-2023347_22	PHROG	phrog_533	portal protein	head and packaging
UHGV-2023347_22	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-2023347_22	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-2023347_22	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2023347_23	PHROG	phrog_1233	NA	unknown function
UHGV-2023347_23	eggNOG-mapper	1415774.U728_832	NA	NA
UHGV-2023347_23	Structural annotation	PF13058	NA	NA
UHGV-2023347_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2023347_24	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-2023347_24	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-2023347_24	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-2023347_24	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2023347_24	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2023347_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2023347_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-2023347_24	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2023347_25	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-2023347_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2023347_26	UniRef90	UniRef90_A0A7D6VSS6	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-2023347_26	eggNOG-mapper	1294142.CINTURNW_1020	NA	NA
UHGV-2023347_26	Pfam	PF07374	NA	DUF1492
UHGV-2023347_26	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-2023347_27	PHROG	phrog_3136	NA	unknown function
UHGV-2023347_27	UniRef90	UniRef90_UPI001C26B029	ASCH domain-containing protein	NA
UHGV-2023347_27	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-2023347_27	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-2023347_27	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-2023347_28	PHROG	phrog_5781	NA	unknown function
UHGV-2023347_28	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-2023347_28	Pfam	PF14359	NA	DUF4406
UHGV-2023347_28	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-2023347_28	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-2023347_29	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-2023347_29	PHROG	phrog_56	DNA methyltransferase	other
UHGV-2023347_29	UniRef90	UniRef90_R9MCP5	DNA adenine methylase	NA
UHGV-2023347_29	eggNOG-mapper	1235799.C818_02654	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-2023347_29	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-2023347_29	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-2023347_29	COG	COG0338	DNA-adenine methylase	NA
UHGV-2023347_29	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-2023347_30	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2023347_30	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2023347_30	UniRef90	UniRef90_A0A350THX9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2023347_30	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-2023347_30	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-2023347_30	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2023347_30	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2023347_30	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-2023347_31	KOfam	K03700	recU; recombination protein U	NA
UHGV-2023347_31	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2023347_31	UniRef90	UniRef90_A0A1H0W5Y9	Holliday junction resolvase RecU	NA
UHGV-2023347_31	eggNOG-mapper	1203606.HMPREF1526_01884	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-2023347_31	Pfam	PF03838	Recombination protein U	RecU
UHGV-2023347_31	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-2023347_31	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-2023347_32	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2023347_32	eggNOG-mapper	411470.RUMGNA_02047	NA	NA
UHGV-2023347_32	Structural annotation	PF21578	NA	NA
UHGV-2023347_35	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-2023347_35	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-2023347_35	UniRef90	UniRef90_A0A841SSA0	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-2023347_35	eggNOG-mapper	1157490.EL26_11905	Antidote-toxin recognition MazE, bacterial antitoxin	NA
UHGV-2023347_35	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-2023347_35	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-2023347_35	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-2023347_35	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-2023347_37	Pfam	PF10711	NA	DUF2513
UHGV-2023347_38	PHROG	phrog_750	NA	unknown function
UHGV-2023347_38	Structural annotation	PF13835, NF040858	NA	NA
UHGV-2023347_40	UniRef90	UniRef90_A0A357TPS2	DNA-binding protein	NA
UHGV-2023347_40	eggNOG-mapper	1347392.CCEZ01000005_gene1206	NA	NA
UHGV-2023347_40	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-2023347_41	UniRef90	UniRef90_UPI001D0E690A	helix-turn-helix domain-containing protein	NA
UHGV-2023347_41	eggNOG-mapper	1163671.JAGI01000002_gene3923	NA	NA
UHGV-2023347_41	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-2023347_42	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2023347_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2023347_42	UniRef90	UniRef90_K1TCM8	Protein containing Helix-turn-helix type 3 domain protein	NA
UHGV-2023347_42	eggNOG-mapper	1033744.CAEL01000030_gene1483	Helix-turn-helix XRE-family like proteins	NA
UHGV-2023347_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2023347_42	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2023347_42	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-2023347_43	PHROG	phrog_1914	NA	unknown function
UHGV-2023347_43	UniRef90	UniRef90_R6DVV5	Predicted Zn peptidase	NA
UHGV-2023347_43	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-2023347_43	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2023347_43	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2023347_43	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2023347_44	Structural annotation	PF18768, MF_02066, NF011886, COG5010	NA	NA