UHGV-2023890

Genome information

Genome length 37,785 bps

CDS count 51

Completeness 85.43% (medium-quality)

geNomad score 0.9731

Prediction confidence Confident

Genome information
Genome ID	UHGV-2023890
vOTU ID	vOTU-015510
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029220\|Ga0168707_100344\|provirus_3_37787
BioSample	SAMEA2737688
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.43% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9731
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.49
Jumbo phage	No

Genome content
Genome length	37,785 bps
GC content	57.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	91.27%
Average CDS length	679.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2023890_1	PHROG	phrog_18190	NA	unknown function
UHGV-2023890_1	eggNOG-mapper	411471.SUBVAR_06932	NA	NA
UHGV-2023890_1	Structural annotation	PF05954, PF00629, NF033848, COG3500	NA	NA
UHGV-2023890_2	PHROG	phrog_1194	NA	unknown function
UHGV-2023890_2	eggNOG-mapper	411471.SUBVAR_06933	NA	NA
UHGV-2023890_2	Structural annotation	PF20458, TIGR02126, COG4718	NA	NA
UHGV-2023890_3	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2023890_3	eggNOG-mapper	665956.HMPREF1032_03628	domain protein	NA
UHGV-2023890_3	COG	COG1511	NA	NA
UHGV-2023890_4	PHROG	phrog_706	NA	unknown function
UHGV-2023890_4	UniRef90	UniRef90_UPI0013141117	Gp15 family bacteriophage protein	NA
UHGV-2023890_4	eggNOG-mapper	665956.HMPREF1032_03058	Bacteriophage Gp15 protein	NA
UHGV-2023890_4	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2023890_4	Structural annotation	PF06854	NA	NA
UHGV-2023890_5	PHROG	phrog_11299	NA	unknown function
UHGV-2023890_5	eggNOG-mapper	665956.HMPREF1032_03059	NA	NA
UHGV-2023890_5	Structural annotation	PF10666	NA	NA
UHGV-2023890_6	PHROG	phrog_3099	NA	unknown function
UHGV-2023890_6	eggNOG-mapper	411471.SUBVAR_06936	NA	NA
UHGV-2023890_6	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2023890_7	PHROG	phrog_3266	tail completion	connector
UHGV-2023890_7	eggNOG-mapper	663278.Ethha_0492	NA	NA
UHGV-2023890_7	Structural annotation	PF12691	NA	NA
UHGV-2023890_8	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2023890_8	UniRef90	UniRef90_UPI001958E7C1	minor capsid protein	NA
UHGV-2023890_8	eggNOG-mapper	642492.Clole_0824	Minor capsid protein	NA
UHGV-2023890_8	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2023890_8	Structural annotation	PF11114	NA	NA
UHGV-2023890_9	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-2023890_11	PHROG	phrog_247	major head protein	head and packaging
UHGV-2023890_11	UniRef90	UniRef90_UPI0009303115	major capsid protein	NA
UHGV-2023890_11	eggNOG-mapper	1029823.AFIE01000059_gene1095	NA	NA
UHGV-2023890_11	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-2023890_12	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2023890_12	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-2023890_13	Structural annotation	PF10723	NA	NA
UHGV-2023890_14	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-2023890_14	UniRef90	UniRef90_A0A174F0K6	Alpha-L-fucosidase	NA
UHGV-2023890_14	eggNOG-mapper	665950.HMPREF1025_02711	Putative amidoligase enzyme	NA
UHGV-2023890_14	AcrCatalog	cluster_58247	NA	NA
UHGV-2023890_14	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-2023890_14	Structural annotation	PF12224, MF_01609, NF010045, COG2170	NA	NA
UHGV-2023890_16	PHROG	phrog_3939	NA	unknown function
UHGV-2023890_16	eggNOG-mapper	445972.ANACOL_00207	NA	NA
UHGV-2023890_17	KOfam	K00682	GGCT; gamma-glutamylcyclotransferase [EC:4.3.2.9]	NA
UHGV-2023890_17	PHROG	phrog_2520	gamma-glutamyl cyclotransferase	moron, auxiliary metabolic gene and host takeover
UHGV-2023890_17	UniRef90	UniRef90_A0A367GJL1	Gamma-glutamylcyclotransferase	NA
UHGV-2023890_17	eggNOG-mapper	397290.C810_01249	Gamma-glutamyl cyclotransferase, AIG2-like	NA
UHGV-2023890_17	Pfam	PF06094	Gamma-glutamyl cyclotransferase, AIG2-like	GGACT
UHGV-2023890_17	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-2023890_17	Structural annotation	PF06094, COG2105	NA	NA
UHGV-2023890_18	KOfam	K05521	draG; ADP-ribosyl-[dinitrogen reductase] hydrolase [EC:3.2.2.24]	NA
UHGV-2023890_18	PHROG	phrog_6572	ADP-ribosylglycohydrolase	other
UHGV-2023890_18	UniRef90	UniRef90_A0A367GJZ8	ADP-ribosyl-[dinitrogen reductase] hydrolase	NA
UHGV-2023890_18	eggNOG-mapper	1007103.AFHW01000094_gene3200	ADP-ribosylglycohydrolase	NA
UHGV-2023890_18	Pfam	PF03747	ADP-ribosylglycohydrolase	ADP_ribosyl_GH
UHGV-2023890_18	COG	COG1397	ADP-ribosylglycohydrolase	NA
UHGV-2023890_18	Structural annotation	PF03747, NF041672, COG1397	NA	NA
UHGV-2023890_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2023890_19	UniRef90	UniRef90_UPI0019688325	phage capsid protein	NA
UHGV-2023890_19	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-2023890_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2023890_19	COG	COG2369	NA	NA
UHGV-2023890_19	Structural annotation	PF06152	NA	NA
UHGV-2023890_20	PHROG	phrog_533	portal protein	head and packaging
UHGV-2023890_20	UniRef90	UniRef90_A0A3E2XD02	Phage portal protein	NA
UHGV-2023890_20	eggNOG-mapper	642492.Clole_0815	NA	NA
UHGV-2023890_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2023890_20	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2023890_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2023890_21	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2023890_21	UniRef90	UniRef90_A0A367GIK4	PBSX family phage terminase large subunit	NA
UHGV-2023890_21	eggNOG-mapper	665956.HMPREF1032_02957	Phage terminase, large subunit, PBSX family	NA
UHGV-2023890_21	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2023890_21	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2023890_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-2023890_21	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2023890_22	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2023890_22	PHROG	phrog_498	DNA methyltransferase	other
UHGV-2023890_22	UniRef90	UniRef90_A0A367GIB5	Methyltransferase	NA
UHGV-2023890_22	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-2023890_22	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2023890_22	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2023890_22	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2023890_22	COG	COG0863	DNA modification methylase	NA
UHGV-2023890_22	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-2023890_25	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-2023890_27	PHROG	phrog_14952	NA	unknown function
UHGV-2023890_27	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-2023890_27	COG	COG2369	NA	NA
UHGV-2023890_27	Structural annotation	PF03496, MF_04142, NF041404	NA	NA
UHGV-2023890_28	PHROG	phrog_8680	NA	unknown function
UHGV-2023890_28	UniRef90	UniRef90_A0A6L5T7C3	NA	NA
UHGV-2023890_28	eggNOG-mapper	1229517.AMFD01000023_gene1324	NA	NA
UHGV-2023890_28	Pfam	PF14386	NA	DUF4417
UHGV-2023890_28	Structural annotation	PF14386, NF041059	NA	NA
UHGV-2023890_29	Structural annotation	PF07374, TIGR01637	NA	NA
UHGV-2023890_31	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-2023890_31	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2023890_31	UniRef90	UniRef90_A0A367GJS6	DEAD/DEAH box helicase	NA
UHGV-2023890_31	eggNOG-mapper	1385512.N784_13490	SNF2 family	NA
UHGV-2023890_31	PADLOC	DpdE_00010	DpdE	DPD
UHGV-2023890_31	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2023890_31	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2023890_31	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-2023890_32	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2023890_32	UniRef90	UniRef90_UPI0018F1F23F	VRR-NUC domain-containing protein	NA
UHGV-2023890_32	eggNOG-mapper	411473.RUMCAL_00894	VRR_NUC	NA
UHGV-2023890_32	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-2023890_33	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2023890_33	UniRef90	UniRef90_A0A367GI49	Virulence-associated protein E	NA
UHGV-2023890_33	eggNOG-mapper	1395587.P364_0122125	virulence-associated E family protein	NA
UHGV-2023890_33	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-2023890_33	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-2023890_33	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-2023890_36	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-2023890_36	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-2023890_38	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-2023890_38	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2023890_38	UniRef90	UniRef90_A0A367GJN4	POLAc domain-containing protein	NA
UHGV-2023890_38	eggNOG-mapper	693746.OBV_43170	DNA polymerase	NA
UHGV-2023890_38	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-2023890_38	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-2023890_38	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-2023890_39	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2023890_39	UniRef90	UniRef90_A0A367GK15	NA	NA
UHGV-2023890_39	eggNOG-mapper	1451189.CFAL_09815	NA	NA
UHGV-2023890_39	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-2023890_39	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-2023890_42	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-2023890_42	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2023890_42	UniRef90	UniRef90_A0A367GI90	NA	NA
UHGV-2023890_42	eggNOG-mapper	1408437.JNJN01000081_gene1518	NA	NA
UHGV-2023890_42	Pfam	PF10926	NA	DUF2800
UHGV-2023890_42	COG	COG2887	RecB family exonuclease	NA
UHGV-2023890_42	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2023890_43	Structural annotation	PF01157, MF_01354, NF002745, COG2139	NA	NA
UHGV-2023890_44	PHROG	phrog_18562	NA	unknown function
UHGV-2023890_48	UniRef90	UniRef90_A0A367GID4	HTH_17 domain-containing protein	NA
UHGV-2023890_48	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2023890_48	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-2023890_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2023890_49	UniRef90	UniRef90_A0A124JZL2	HTH cro/C1-type domain-containing protein	NA
UHGV-2023890_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2023890_49	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-2023890_51	KOfam	K14059	int; integrase	NA
UHGV-2023890_51	PHROG	phrog_1	integrase	integration and excision
UHGV-2023890_51	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-2023890_51	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-2023890_51	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2023890_51	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2023890_51	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA