UHGV-2023895

Genome information

vOTU vOTU-002088

Genome length 45,073 bps

CDS count 68

Completeness 100.00% (complete)

geNomad score 0.9744

Prediction confidence Confident

Genome information
Genome ID	UHGV-2023895
vOTU ID	vOTU-002088
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029220\|Ga0168707_100265
BioSample	SAMEA2737688
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	31
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9744
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.66
Jumbo phage	No

Genome content
Genome length	45,073 bps
GC content	48.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	93.71%
Average CDS length	624.18 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2023895_2	KOfam	K14059	int; integrase	NA
UHGV-2023895_2	PHROG	phrog_1	integrase	integration and excision
UHGV-2023895_2	UniRef90	UniRef90_G9YK08	Site-specific recombinase, phage integrase family	NA
UHGV-2023895_2	eggNOG-mapper	861450.HMPREF0080_02017	Belongs to the 'phage' integrase family	NA
UHGV-2023895_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2023895_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2023895_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2023895_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2023895_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2023895_5	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2023895_5	UniRef90	UniRef90_A0A1Q6RAK6	HTH cro/C1-type domain-containing protein	NA
UHGV-2023895_5	eggNOG-mapper	279010.BL03621	Peptidase S24-like	NA
UHGV-2023895_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2023895_5	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2023895_5	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-2023895_6	eggNOG-mapper	1226325.HMPREF1548_00560	NA	NA
UHGV-2023895_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2023895_6	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-2023895_7	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-2023895_8	UniRef90	UniRef90_R6XZA3	LysM domain protein	NA
UHGV-2023895_8	Structural annotation	MF_02014, NF010723	NA	NA
UHGV-2023895_10	Structural annotation	PF14282, NF010673	NA	NA
UHGV-2023895_11	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2023895_11	UniRef90	UniRef90_R6WX74	Siphovirus family protein	NA
UHGV-2023895_11	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-2023895_11	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-2023895_11	Structural annotation	PF05565	NA	NA
UHGV-2023895_12	PHROG	phrog_1366	NA	unknown function
UHGV-2023895_12	UniRef90	UniRef90_UPI001EDFC883	ATP-binding protein	NA
UHGV-2023895_12	eggNOG-mapper	555779.Dthio_PD3616	SMART AAA ATPase	NA
UHGV-2023895_12	Pfam	PF13479	AAA domain	AAA_24
UHGV-2023895_12	COG	COG0468	RecA/RadA recombinase	NA
UHGV-2023895_12	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2023895_13	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2023895_13	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2023895_13	UniRef90	UniRef90_A0A1Q6RAI1	Single-stranded DNA-binding protein	NA
UHGV-2023895_13	eggNOG-mapper	626939.HMPREF9443_01150	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-2023895_13	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2023895_13	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2023895_13	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2023895_13	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2023895_13	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2023895_14	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-2023895_14	UniRef90	UniRef90_UPI0008D9B52C	NA	NA
UHGV-2023895_14	eggNOG-mapper	568816.Acin_1851	NA	NA
UHGV-2023895_14	Pfam	PF06048	NA	DUF927
UHGV-2023895_14	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-2023895_14	COG	COG5519	NA	NA
UHGV-2023895_14	Structural annotation	PF06048, PF18662, MF_04154, MF_01625, NF005477, COG5519, COG4643	NA	NA
UHGV-2023895_18	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-2023895_18	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2023895_18	UniRef90	UniRef90_A0A1G6K8K7	Type III restriction enzyme, res subunit	NA
UHGV-2023895_18	eggNOG-mapper	568816.Acin_1846	helicase superfamily c-terminal domain	NA
UHGV-2023895_18	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2023895_18	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2023895_18	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2023895_18	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2023895_18	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-2023895_19	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2023895_19	UniRef90	UniRef90_A0A0B5A5Y0	VRR-NUC domain-containing protein	NA
UHGV-2023895_19	eggNOG-mapper	1589270.A0A0B5A5Y0_9CAUD	hydrolase activity, acting on ester bonds	NA
UHGV-2023895_19	Structural annotation	PF04471, MF_00130, NF002582, COG3331	NA	NA
UHGV-2023895_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2023895_21	UniRef90	UniRef90_A0A849CSI6	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-2023895_21	eggNOG-mapper	1262914.BN533_00791	DNA-templated transcription, initiation	NA
UHGV-2023895_21	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-2023895_21	Structural annotation	PF06530, TIGR01636, COG2739	NA	NA
UHGV-2023895_26	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-2023895_26	PHROG	phrog_16625	NA	unknown function
UHGV-2023895_26	UniRef90	UniRef90_A0A645CFN4	ADPrib_exo_Tox domain-containing protein	NA
UHGV-2023895_26	eggNOG-mapper	563192.HMPREF0179_00384	Phage Mu protein F like protein	NA
UHGV-2023895_26	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-2023895_26	COG	COG2369	NA	NA
UHGV-2023895_29	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-2023895_29	PHROG	phrog_498	DNA methyltransferase	other
UHGV-2023895_29	UniRef90	UniRef90_A0A1Q6RAE5	Methyltransferase	NA
UHGV-2023895_29	eggNOG-mapper	226185.EF_2114	DNA methylase	NA
UHGV-2023895_29	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2023895_29	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2023895_29	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2023895_29	COG	COG0863	DNA modification methylase	NA
UHGV-2023895_29	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-2023895_30	PHROG	phrog_2412	NA	unknown function
UHGV-2023895_30	UniRef90	UniRef90_UPI001106D0BC	KGG domain-containing protein	NA
UHGV-2023895_30	eggNOG-mapper	563192.HMPREF0179_00168	NA	NA
UHGV-2023895_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2023895_31	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2023895_31	UniRef90	UniRef90_A0A1Q6RAF0	Terminase	NA
UHGV-2023895_31	eggNOG-mapper	1123288.SOV_2c10550	Terminase-like family	NA
UHGV-2023895_31	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2023895_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2023895_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-2023895_31	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2023895_32	KOfam	K09961	NA	NA
UHGV-2023895_32	PHROG	phrog_146	portal protein	head and packaging
UHGV-2023895_32	UniRef90	UniRef90_UPI000CF8744B	NA	NA
UHGV-2023895_32	eggNOG-mapper	936573.HMPREF1147_1323	NA	NA
UHGV-2023895_32	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-2023895_32	NCBIFam	TIGR01555.1	phage-associated protein, HI1409 family	NA
UHGV-2023895_32	COG	COG3567	NA	NA
UHGV-2023895_32	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-2023895_34	PHROG	phrog_324	head morphogenesis	head and packaging
UHGV-2023895_34	UniRef90	UniRef90_A0A1Q6RAG2	Phage_Mu_F domain-containing protein	NA
UHGV-2023895_34	eggNOG-mapper	1211817.CCAT010000003_gene238	Phage Mu protein F like protein	NA
UHGV-2023895_34	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2023895_34	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2023895_34	COG	COG2369	NA	NA
UHGV-2023895_34	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-2023895_35	KOfam	K09960	NA	NA
UHGV-2023895_35	PHROG	phrog_16985	NA	unknown function
UHGV-2023895_35	UniRef90	UniRef90_UPI000CF9DD55	NA	NA
UHGV-2023895_35	eggNOG-mapper	1123288.SOV_2c10610	NA	NA
UHGV-2023895_35	Pfam	PF09979	NA	DUF2213
UHGV-2023895_35	COG	COG3566	NA	NA
UHGV-2023895_35	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-2023895_36	PHROG	phrog_563	virion structural protein	head and packaging
UHGV-2023895_36	UniRef90	UniRef90_A0A0U1KXM2	Putative bacteriophage protein	NA
UHGV-2023895_36	eggNOG-mapper	1415774.U728_3750	NA	NA
UHGV-2023895_36	Structural annotation	PF09956	NA	NA
UHGV-2023895_37	PHROG	phrog_264	major head protein	head and packaging
UHGV-2023895_37	UniRef90	UniRef90_UPI00190EF81E	NA	NA
UHGV-2023895_37	eggNOG-mapper	1415774.U728_3749	NA	NA
UHGV-2023895_37	Pfam	PF09950	NA	DUF2184
UHGV-2023895_37	COG	COG4834	NA	NA
UHGV-2023895_37	Structural annotation	PF09950, MF_04113, TIGR01554, COG4834	NA	NA
UHGV-2023895_39	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-2023895_39	UniRef90	UniRef90_A0A354WRG8	NA	NA
UHGV-2023895_39	eggNOG-mapper	1415774.U728_3747	NA	NA
UHGV-2023895_39	Pfam	PF13262	NA	DUF4054
UHGV-2023895_39	Structural annotation	PF13262	NA	NA
UHGV-2023895_40	PHROG	phrog_222	tail protein	tail
UHGV-2023895_40	UniRef90	UniRef90_C9LU87	Putative bacteriophage protein	NA
UHGV-2023895_40	eggNOG-mapper	1123288.SOV_2c10660	NA	NA
UHGV-2023895_41	PHROG	phrog_939	head protein	head and packaging
UHGV-2023895_41	eggNOG-mapper	1123288.SOV_2c10670	NA	NA
UHGV-2023895_41	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2023895_42	PHROG	phrog_1973	NA	unknown function
UHGV-2023895_42	eggNOG-mapper	864563.HMPREF9166_1247	NA	NA
UHGV-2023895_42	Structural annotation	PF16724	NA	NA
UHGV-2023895_43	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-2023895_43	UniRef90	UniRef90_UPI000CF84C55	NA	NA
UHGV-2023895_43	eggNOG-mapper	1123288.SOV_2c10690	NA	NA
UHGV-2023895_43	Pfam	PF11863	NA	DUF3383
UHGV-2023895_43	Structural annotation	PF11863, COG3497	NA	NA
UHGV-2023895_44	PHROG	phrog_280	virion structural protein	head and packaging
UHGV-2023895_44	UniRef90	UniRef90_A0A412CGT4	NA	NA
UHGV-2023895_44	eggNOG-mapper	1123288.SOV_2c10710	NA	NA
UHGV-2023895_44	Pfam	PF11681	Bacteriophage KPP10, Structural protein ORF10	KPP10_Orf10
UHGV-2023895_44	Structural annotation	PF11681, TIGR02241, COG5437	NA	NA
UHGV-2023895_45	eggNOG-mapper	1196322.A370_02023	NA	NA
UHGV-2023895_45	Pfam	PF21822	Phage tail assembly chaperone protein, TAC	Phage_TAC_15
UHGV-2023895_45	Structural annotation	PF21822	NA	NA
UHGV-2023895_46	PHROG	phrog_4364	NA	unknown function
UHGV-2023895_46	UniRef90	UniRef90_UPI001C39E5BE	4-alpha-glucanotransferase	NA
UHGV-2023895_46	eggNOG-mapper	1123288.SOV_2c10730	NA	NA
UHGV-2023895_47	PHROG	phrog_9570	tail length tape measure protein	tail
UHGV-2023895_47	UniRef90	UniRef90_A0A1Q6RAF2	Phage_lysozyme2 domain-containing protein	NA
UHGV-2023895_47	eggNOG-mapper	1123288.SOV_2c10740	NA	NA
UHGV-2023895_47	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-2023895_47	Structural annotation	PF18013, COG4764	NA	NA
UHGV-2023895_48	PHROG	phrog_817	tail fiber protein	tail
UHGV-2023895_48	UniRef90	UniRef90_UPI0018EE58A4	fibronectin type III domain-containing protein	NA
UHGV-2023895_48	eggNOG-mapper	1123288.SOV_2c10750	NA	NA
UHGV-2023895_48	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-2023895_48	Structural annotation	PF21821, TIGR01633, COG4722	NA	NA
UHGV-2023895_49	PHROG	phrog_349	virion structural protein	head and packaging
UHGV-2023895_49	UniRef90	UniRef90_U2HCN2	Putative bacteriophage protein	NA
UHGV-2023895_49	eggNOG-mapper	936573.HMPREF1147_1342	NA	NA
UHGV-2023895_50	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-2023895_50	UniRef90	UniRef90_A0A0U1KW78	NA	NA
UHGV-2023895_50	eggNOG-mapper	1123288.SOV_2c10770	NA	NA
UHGV-2023895_50	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-2023895_51	UniRef90	UniRef90_A0A1Q6RAF4	Gp138_N domain-containing protein	NA
UHGV-2023895_51	eggNOG-mapper	1415774.U728_3735	Baseplate assembly protein	NA
UHGV-2023895_51	Pfam	PF18352	NA	Gp138_N
UHGV-2023895_51	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-2023895_51	Structural annotation	PF18352, TIGR01644, COG4540	NA	NA
UHGV-2023895_52	PHROG	phrog_281	PAAR motif of membran proteins	moron, auxiliary metabolic gene and host takeover
UHGV-2023895_52	UniRef90	UniRef90_A0A1Q6RAC4	PaaR repeat-containing protein	NA
UHGV-2023895_52	eggNOG-mapper	927704.SELR_16680	PAAR repeat-containing protein	NA
UHGV-2023895_52	Pfam	PF05488	PAAR motif	PAAR_motif
UHGV-2023895_52	COG	COG4104	Zn-binding Pro-Ala-Ala-Arg (PAAR) domain, involved in Type VI secretion	NA
UHGV-2023895_52	Structural annotation	PF05488, NF033420, COG4104	NA	NA
UHGV-2023895_53	PHROG	phrog_120	baseplate protein	tail
UHGV-2023895_53	UniRef90	UniRef90_A0A0U1KW63	Putative bacteriophage protein	NA
UHGV-2023895_53	eggNOG-mapper	1123288.SOV_2c10790	NA	NA
UHGV-2023895_53	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-2023895_54	PHROG	phrog_6	baseplate protein	tail
UHGV-2023895_54	UniRef90	UniRef90_A0A1Q6RAC9	Baseplate_J domain-containing protein	NA
UHGV-2023895_54	eggNOG-mapper	1123288.SOV_2c10800	Baseplate J-like protein	NA
UHGV-2023895_54	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-2023895_54	COG	COG3299	NA	NA
UHGV-2023895_54	Structural annotation	PF03434, PF21379, PF21110, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-2023895_55	PHROG	phrog_587	structural protein	head and packaging
UHGV-2023895_55	UniRef90	UniRef90_UPI000CF9BD62	NA	NA
UHGV-2023895_55	eggNOG-mapper	342113.DM82_1186	NA	NA
UHGV-2023895_55	Pfam	PF11041	NA	DUF2612
UHGV-2023895_55	Structural annotation	PF11041, TIGR02242, COG3948	NA	NA
UHGV-2023895_56	PHROG	phrog_5717	tail protein	tail
UHGV-2023895_56	eggNOG-mapper	1123288.SOV_2c10820	Phage Tail Collar Domain	NA
UHGV-2023895_56	COG	COG4675	Phage tail collar domain	NA
UHGV-2023895_56	Structural annotation	COG4675	NA	NA
UHGV-2023895_57	eggNOG-mapper	476272.RUMHYD_03672	PFAM Collagen triple helix	NA
UHGV-2023895_57	COG	COG2931	Ca2+-binding protein, RTX toxin-related	NA
UHGV-2023895_58	Structural annotation	PF08948	NA	NA
UHGV-2023895_59	PHROG	phrog_2837	tail protein	tail
UHGV-2023895_59	UniRef90	UniRef90_A0A1Q6R2G9	NA	NA
UHGV-2023895_59	eggNOG-mapper	520709.F985_01945	NA	NA
UHGV-2023895_59	Pfam	PF14301	NA	DUF4376
UHGV-2023895_59	Structural annotation	PF14301	NA	NA
UHGV-2023895_60	PHROG	phrog_199	holin	lysis
UHGV-2023895_60	UniRef90	UniRef90_R6X5E0	Holin domain protein	NA
UHGV-2023895_60	eggNOG-mapper	936573.HMPREF1147_1740	Bacteriophage holin family	NA
UHGV-2023895_60	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2023895_60	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2023895_61	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-2023895_61	PHROG	phrog_894	endolysin	lysis
UHGV-2023895_61	UniRef90	UniRef90_A0A1Q6R3X6	Peptidase_M15_3 domain-containing protein	NA
UHGV-2023895_61	eggNOG-mapper	696369.KI912183_gene1840	Peptidase M15A	NA
UHGV-2023895_61	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-2023895_61	COG	COG3108	NA	NA
UHGV-2023895_61	Structural annotation	PF08291, NF000086, COG3108	NA	NA
UHGV-2023895_63	PHROG	phrog_3512	sigma factor	transcription regulation
UHGV-2023895_63	UniRef90	UniRef90_A0A1Q6R3V1	Sigma70_r4 domain-containing protein	NA
UHGV-2023895_63	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-2023895_63	Structural annotation	PF08281, MF_00245, NF001075, COG2739	NA	NA
UHGV-2023895_64	PHROG	phrog_21718	NA	unknown function
UHGV-2023895_65	PHROG	phrog_16490	NA	unknown function
UHGV-2023895_65	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-2023895_66	UniRef90	UniRef90_A0A349YP35	BclA_C domain-containing protein	NA
UHGV-2023895_66	Structural annotation	PF18573, NF033147	NA	NA