UHGV-2023955

Genome information

Genome length 23,704 bps

CDS count 46

Completeness 64.21% (medium-quality)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-2023955
vOTU ID	vOTU-027035
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029128\|Ga0168745_100618\|provirus_1_23704
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.21% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.28
Jumbo phage	No

Genome content
Genome length	23,704 bps
GC content	57.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	93.78%
Average CDS length	486.59 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2023955_3	KOfam	K18454	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	NA
UHGV-2023955_3	PHROG	phrog_27545	NA	unknown function
UHGV-2023955_3	UniRef90	UniRef90_A0A1C5VT90	Chitinase A1	NA
UHGV-2023955_3	eggNOG-mapper	552398.HMPREF0866_03095	NA	NA
UHGV-2023955_3	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-2023955_3	Structural annotation	PF14600	NA	NA
UHGV-2023955_4	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2023955_4	PHROG	phrog_9611	endolysin	lysis
UHGV-2023955_4	UniRef90	UniRef90_R5B1Z3	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-2023955_4	eggNOG-mapper	97138.C820_00251	Ami_2	NA
UHGV-2023955_4	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2023955_4	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-2023955_4	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-2023955_5	PHROG	phrog_962	holin	lysis
UHGV-2023955_5	UniRef90	UniRef90_A0A3R5XPP7	Phage holin	NA
UHGV-2023955_5	eggNOG-mapper	553973.CLOHYLEM_04415	Bacteriophage holin	NA
UHGV-2023955_5	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-2023955_5	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-2023955_5	COG	COG5546	NA	NA
UHGV-2023955_5	Structural annotation	COG5546	NA	NA
UHGV-2023955_6	eggNOG-mapper	33035.JPJF01000023_gene3222	NA	NA
UHGV-2023955_7	eggNOG-mapper	693746.OBV_01600	NA	NA
UHGV-2023955_8	UniRef90	UniRef90_A0A2U1CD16	PBECR3 domain-containing protein	NA
UHGV-2023955_8	eggNOG-mapper	1519439.JPJG01000011_gene53	NA	NA
UHGV-2023955_8	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-2023955_9	PHROG	phrog_474	phosphofructokinase	other
UHGV-2023955_9	UniRef90	UniRef90_K1TIM3	NA	NA
UHGV-2023955_9	eggNOG-mapper	1203606.HMPREF1526_00237	NA	NA
UHGV-2023955_9	Pfam	PF19905	NA	DUF6378
UHGV-2023955_9	Structural annotation	PF19905	NA	NA
UHGV-2023955_11	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-2023955_11	UniRef90	UniRef90_A0A5C7QA78	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-2023955_11	eggNOG-mapper	1235792.C808_02622	NA	NA
UHGV-2023955_11	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-2023955_11	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2023955_11	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-2023955_11	Structural annotation	PF04542, MF_00961, TIGR02835, COG1191	NA	NA
UHGV-2023955_15	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-2023955_17	PHROG	phrog_3136	NA	unknown function
UHGV-2023955_17	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-2023955_17	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-2023955_17	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-2023955_18	PHROG	phrog_38832	NA	unknown function
UHGV-2023955_18	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-2023955_21	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2023955_21	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-2023955_21	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-2023955_22	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2023955_22	UniRef90	UniRef90_UPI0013778123	replisome organizer	NA
UHGV-2023955_22	eggNOG-mapper	1139219.I569_01402	DnaD domain protein	NA
UHGV-2023955_22	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2023955_22	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-2023955_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2023955_23	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2023955_23	UniRef90	UniRef90_A0A1Q8XFQ7	Single-stranded DNA-binding protein	NA
UHGV-2023955_23	eggNOG-mapper	1074488.AGBX01000001_gene892	Single-strand binding protein family	NA
UHGV-2023955_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2023955_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2023955_23	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2023955_24	PHROG	phrog_14970	NA	unknown function
UHGV-2023955_24	UniRef90	UniRef90_A0A3P6JH63	Essential recombination function protein	NA
UHGV-2023955_24	eggNOG-mapper	411470.RUMGNA_02193	double-strand break repair protein	NA
UHGV-2023955_24	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-2023955_24	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-2023955_24	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-2023955_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2023955_28	Structural annotation	PF13744, NF007481, COG1476	NA	NA
UHGV-2023955_30	PHROG	phrog_4433	NA	unknown function
UHGV-2023955_30	eggNOG-mapper	645991.Sgly_0315	regulation of DNA-templated transcription, elongation	NA
UHGV-2023955_30	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-2023955_30	Structural annotation	NF007410	NA	NA
UHGV-2023955_31	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-2023955_38	UniRef90	UniRef90_UPI001D0E690A	helix-turn-helix domain-containing protein	NA
UHGV-2023955_38	eggNOG-mapper	1163671.JAGI01000002_gene3923	NA	NA
UHGV-2023955_38	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-2023955_39	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2023955_39	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2023955_39	UniRef90	UniRef90_UPI0013DE7A28	helix-turn-helix domain-containing protein	NA
UHGV-2023955_39	eggNOG-mapper	1235797.C816_03553	DNA-binding helix-turn-helix protein	NA
UHGV-2023955_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2023955_39	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2023955_39	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2023955_41	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2023955_41	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2023955_41	UniRef90	UniRef90_R5AVU4	CI-like repressor	NA
UHGV-2023955_41	eggNOG-mapper	1292020.H483_0116665	PFAM helix-turn-helix domain protein	NA
UHGV-2023955_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2023955_41	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2023955_41	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2023955_44	KOfam	K14059	int; integrase	NA
UHGV-2023955_44	PHROG	phrog_1	integrase	integration and excision
UHGV-2023955_44	UniRef90	UniRef90_A0A174DBH0	Site-specific tyrosine recombinase XerC	NA
UHGV-2023955_44	eggNOG-mapper	411468.CLOSCI_00325	Belongs to the 'phage' integrase family	NA
UHGV-2023955_44	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2023955_44	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2023955_44	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-2023955_45	UniRef90	UniRef90_K1TT23	Site-specific recombinase	NA
UHGV-2023955_45	eggNOG-mapper	411483.FAEPRAA2165_00385	NA	NA
UHGV-2023955_45	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2023955_46	PHROG	phrog_26160	NA	unknown function
UHGV-2023955_46	UniRef90	UniRef90_A0A0S2W0H8	GIY-YIG domain-containing protein	NA
UHGV-2023955_46	eggNOG-mapper	665956.HMPREF1032_01796	NA	NA
UHGV-2023955_46	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-2023955_46	Structural annotation	PF19835, COG1673	NA	NA