UHGV-2024162

Genome information

Genome length 35,509 bps

CDS count 59

Completeness 57.80% (medium-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-2024162
vOTU ID	vOTU-022679
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029230\|Ga0168685_100044\|provirus_110310_148712
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	57.80% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.56
Jumbo phage	No

Genome content
Genome length	35,509 bps
GC content	29.29%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	93.76%
Average CDS length	566.70 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2024162_5	UniRef90	UniRef90_A0A858BRQ4	NA	NA
UHGV-2024162_5	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-2024162_5	Pfam	PF06378	NA	DUF1071
UHGV-2024162_5	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-2024162_6	Structural annotation	PF12684, MF_03030, TIGR04328, COG4343	NA	NA
UHGV-2024162_7	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2024162_7	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-2024162_7	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-2024162_7	Structural annotation	PF05772	NA	NA
UHGV-2024162_8	PHROG	phrog_7566	NA	unknown function
UHGV-2024162_8	UniRef90	UniRef90_A0A1V5HS54	HNH domain-containing protein	NA
UHGV-2024162_8	eggNOG-mapper	1118057.CAGX01000020_gene1648	NA	NA
UHGV-2024162_11	PHROG	phrog_1408	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2024162_11	UniRef90	UniRef90_A0A377WGF2	Primosomal protein I	NA
UHGV-2024162_11	eggNOG-mapper	632292.Calhy_0413	NA	NA
UHGV-2024162_12	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2024162_12	eggNOG-mapper	272563.CD630_31510	DnaD domain protein	NA
UHGV-2024162_12	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2024162_13	PHROG	phrog_1123	NA	unknown function
UHGV-2024162_13	eggNOG-mapper	411483.FAEPRAA2165_01885	NA	NA
UHGV-2024162_13	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-2024162_13	Structural annotation	PF02002, TIGR03433, COG1695	NA	NA
UHGV-2024162_15	eggNOG-mapper	411470.RUMGNA_02041	NA	NA
UHGV-2024162_17	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2024162_17	UniRef90	UniRef90_A0A7C9LJY9	NA	NA
UHGV-2024162_17	eggNOG-mapper	293826.Amet_2598	NA	NA
UHGV-2024162_17	Pfam	PF06356	NA	DUF1064
UHGV-2024162_17	Structural annotation	PF06356	NA	NA
UHGV-2024162_19	PHROG	phrog_10079	NA	unknown function
UHGV-2024162_19	eggNOG-mapper	621372.ACIH01000214_gene1012	NA	NA
UHGV-2024162_21	PHROG	phrog_98	NA	unknown function
UHGV-2024162_21	UniRef90	UniRef90_A0A661QKM8	YopX domain-containing protein	NA
UHGV-2024162_21	eggNOG-mapper	742767.HMPREF9456_02048	YopX protein	NA
UHGV-2024162_21	Pfam	PF09643	YopX protein	YopX
UHGV-2024162_21	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2024162_21	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2024162_23	PHROG	phrog_1828	NA	unknown function
UHGV-2024162_35	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-2024162_37	PHROG	phrog_1233	NA	unknown function
UHGV-2024162_37	Structural annotation	PF13058	NA	NA
UHGV-2024162_39	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2024162_39	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-2024162_39	UniRef90	UniRef90_R6XV26	Phage terminase	NA
UHGV-2024162_39	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-2024162_39	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-2024162_39	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2024162_39	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2024162_39	COG	COG1783	Phage terminase large subunit	NA
UHGV-2024162_39	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2024162_40	PHROG	phrog_533	portal protein	head and packaging
UHGV-2024162_40	UniRef90	UniRef90_R6Y8H1	Minor capsid protein	NA
UHGV-2024162_40	eggNOG-mapper	545697.HMPREF0216_02845	NA	NA
UHGV-2024162_40	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2024162_41	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2024162_41	UniRef90	UniRef90_R6YG84	CdiA_C domain-containing protein	NA
UHGV-2024162_41	eggNOG-mapper	1462526.BN990_03872	Phage minor capsid protein 2	NA
UHGV-2024162_41	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2024162_41	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-2024162_41	COG	COG2369	NA	NA
UHGV-2024162_41	Structural annotation	PF06152, PF21814	NA	NA
UHGV-2024162_42	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2024162_42	UniRef90	UniRef90_R6XV28	Phage minor structural protein GP20	NA
UHGV-2024162_42	eggNOG-mapper	1399941.U3PIU5_9CAUD	Phage minor structural protein GP20	NA
UHGV-2024162_42	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2024162_42	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-2024162_43	PHROG	phrog_212	major head protein	head and packaging
UHGV-2024162_43	UniRef90	UniRef90_A0A416DTJ6	Phage capsid protein	NA
UHGV-2024162_43	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-2024162_43	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-2024162_44	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2024162_44	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-2024162_45	PHROG	phrog_3366	NA	unknown function
UHGV-2024162_45	Pfam	PF20536	NA	DUF6751
UHGV-2024162_45	Structural annotation	PF20536, COG5614	NA	NA
UHGV-2024162_46	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2024162_46	UniRef90	UniRef90_UPI000930E2B9	minor capsid protein	NA
UHGV-2024162_46	eggNOG-mapper	1304866.K413DRAFT_3041	NA	NA
UHGV-2024162_46	Structural annotation	PF11114	NA	NA
UHGV-2024162_47	PHROG	phrog_3266	tail completion	connector
UHGV-2024162_47	UniRef90	UniRef90_UPI001C86C58C	chloramphenicol resistance protein	NA
UHGV-2024162_47	eggNOG-mapper	1151292.QEW_4531	NA	NA
UHGV-2024162_47	Structural annotation	PF12691	NA	NA
UHGV-2024162_48	PHROG	phrog_3099	NA	unknown function
UHGV-2024162_48	eggNOG-mapper	645991.Sgly_0346	NA	NA
UHGV-2024162_48	Structural annotation	PF09393, TIGR02126, COG5437	NA	NA
UHGV-2024162_49	PHROG	phrog_11491	NA	unknown function
UHGV-2024162_49	UniRef90	UniRef90_R6U6A5	Prophage pi3 protein 59	NA
UHGV-2024162_49	eggNOG-mapper	1410674.JNKU01000056_gene1899	NA	NA
UHGV-2024162_49	Structural annotation	PF11355, PF13828, MF_00791, TIGR02588, COG5633	NA	NA
UHGV-2024162_51	PHROG	phrog_706	NA	unknown function
UHGV-2024162_51	UniRef90	UniRef90_UPI00067E77F7	Gp15 family bacteriophage protein	NA
UHGV-2024162_51	eggNOG-mapper	469596.HMPREF9488_01327	Bacteriophage Gp15 protein	NA
UHGV-2024162_51	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2024162_51	Structural annotation	PF06854	NA	NA
UHGV-2024162_52	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2024162_52	eggNOG-mapper	1280692.AUJL01000027_gene2150	phage tail tape measure protein	NA
UHGV-2024162_52	COG	COG1511	NA	NA
UHGV-2024162_52	Structural annotation	PF09486, TIGR02559	NA	NA
UHGV-2024162_53	PHROG	phrog_1194	NA	unknown function
UHGV-2024162_53	Structural annotation	PF20458, TIGR01633, COG4718	NA	NA
UHGV-2024162_54	UniRef90	UniRef90_R6Y8J2	Peptidase S74 domain-containing protein	NA
UHGV-2024162_54	eggNOG-mapper	469596.HMPREF9488_01330	NA	NA
UHGV-2024162_54	Structural annotation	NF033848, COG3500	NA	NA
UHGV-2024162_55	PHROG	phrog_372	tail protein	tail
UHGV-2024162_55	UniRef90	UniRef90_A0A8F2F0P6	NA	NA
UHGV-2024162_55	eggNOG-mapper	1035189.HMPREF9954_0321	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-2024162_55	Pfam	PF05895	NA	DUF859
UHGV-2024162_55	COG	COG4675	Phage tail collar domain	NA
UHGV-2024162_55	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-2024162_57	PHROG	phrog_1129	holin	lysis
UHGV-2024162_57	UniRef90	UniRef90_A0A1Q6M1T2	Holin	NA
UHGV-2024162_57	eggNOG-mapper	1391647.AVSV01000036_gene884	Phage holin family Hol44, in holin superfamily V	NA
UHGV-2024162_57	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2024162_57	Structural annotation	PF06946	NA	NA
UHGV-2024162_58	KOfam	K01446	PGRP; peptidoglycan recognition protein	NA
UHGV-2024162_58	PHROG	phrog_1493	endolysin	lysis
UHGV-2024162_58	UniRef90	UniRef90_A0A3D1RJG1	Peptidoglycan-binding domain-containing protein	NA
UHGV-2024162_58	eggNOG-mapper	553973.CLOHYLEM_04450	Ami_2	NA
UHGV-2024162_58	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2024162_58	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-2024162_58	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2024162_58	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-2024162_58	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-2024162_59	KOfam	K19449	sinR; XRE family transcriptional regulator, master regulator for biofilm formation	NA
UHGV-2024162_59	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2024162_59	UniRef90	UniRef90_R5YVI1	HTH-type transcriptional regulator SinR	NA
UHGV-2024162_59	eggNOG-mapper	981383.AEWH01000008_gene3665	Helix-turn-helix XRE-family like proteins	NA
UHGV-2024162_59	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2024162_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2024162_59	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-2024162_59	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2024162_59	Structural annotation	PF13443, MF_00535, NF041951, COG3655	NA	NA