UHGV-2025148

Genome information

Genome length 38,442 bps

CDS count 61

Completeness 95.35% (high-quality)

geNomad score 0.9772

Prediction confidence Confident

Genome information
Genome ID	UHGV-2025148
vOTU ID	vOTU-065444
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029081\|Ga0169209_100030\|provirus_187178_231262
BioSample	SAMEA2579943
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.35% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	26
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9772
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	99.64
Jumbo phage	No

Genome content
Genome length	38,442 bps
GC content	41.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	93.52%
Average CDS length	592.28 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2025148_1	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2025148_1	PHROG	phrog_435	endolysin	lysis
UHGV-2025148_1	UniRef90	UniRef90_A0A415SBY0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2025148_1	eggNOG-mapper	411470.RUMGNA_02814	Ami_3	NA
UHGV-2025148_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2025148_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2025148_1	Structural annotation	PF01520, MF_00417, TIGR02883, COG0860	NA	NA
UHGV-2025148_3	PHROG	phrog_10091	holin	lysis
UHGV-2025148_3	UniRef90	UniRef90_A0A2N5P008	Phage holin	NA
UHGV-2025148_3	eggNOG-mapper	428127.EUBDOL_01206	COG5546 Small integral membrane protein	NA
UHGV-2025148_3	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-2025148_3	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-2025148_3	COG	COG5546	NA	NA
UHGV-2025148_3	Structural annotation	COG5546	NA	NA
UHGV-2025148_4	eggNOG-mapper	608534.GCWU000341_02271	NA	NA
UHGV-2025148_5	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-2025148_5	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-2025148_5	UniRef90	UniRef90_UPI001D040907	collagen-like protein	NA
UHGV-2025148_5	eggNOG-mapper	411470.RUMGNA_02230	NA	NA
UHGV-2025148_5	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2025148_5	Pfam	PF21470	Minor structural protein 5-like, C-terminal domain	BppU-like_C
UHGV-2025148_5	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2025148_5	Structural annotation	PF14594, PF08931, PF13895, TIGR01665, TIGR04488, COG4926	NA	NA
UHGV-2025148_6	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-2025148_6	UniRef90	UniRef90_A0A415S8D0	Phage tail family protein	NA
UHGV-2025148_6	eggNOG-mapper	411470.RUMGNA_02229	NA	NA
UHGV-2025148_6	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2025148_6	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2025148_6	COG	COG4722	Phage-related protein YomH	NA
UHGV-2025148_6	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-2025148_7	PHROG	phrog_1204	tail protein	tail
UHGV-2025148_7	UniRef90	UniRef90_A0A415S8E0	TMP_3 domain-containing protein	NA
UHGV-2025148_7	eggNOG-mapper	673832.D2IYX6_9CAUD	transmembrane transport	NA
UHGV-2025148_7	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2025148_7	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2025148_7	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2025148_8	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-2025148_8	UniRef90	UniRef90_A0A0K9N8J7	NA	NA
UHGV-2025148_8	eggNOG-mapper	1232453.BAIF02000011_gene3366	NA	NA
UHGV-2025148_9	PHROG	phrog_183	tail chaperone protein	tail
UHGV-2025148_9	UniRef90	UniRef90_A0A1M6RGW0	Phage tail assembly chaperone protein, TAC	NA
UHGV-2025148_9	eggNOG-mapper	476272.RUMHYD_02861	Phage tail assembly chaperone protein, TAC	NA
UHGV-2025148_9	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-2025148_9	Structural annotation	PF12363	NA	NA
UHGV-2025148_10	PHROG	phrog_238	major tail protein	tail
UHGV-2025148_10	UniRef90	UniRef90_A0A2N5PI04	Phage major tail protein, TP901-1 family	NA
UHGV-2025148_10	eggNOG-mapper	1235798.C817_03471	Phage tail tube protein	NA
UHGV-2025148_10	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-2025148_10	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-2025148_10	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2025148_11	PHROG	phrog_176	tail terminator	connector
UHGV-2025148_11	UniRef90	UniRef90_UPI001E62787A	NA	NA
UHGV-2025148_11	eggNOG-mapper	476272.RUMHYD_02859	NA	NA
UHGV-2025148_11	Structural annotation	PF11367	NA	NA
UHGV-2025148_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2025148_12	UniRef90	UniRef90_UPI001BADC8E2	HK97 gp10 family phage protein	NA
UHGV-2025148_12	eggNOG-mapper	476272.RUMHYD_02858	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2025148_12	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2025148_12	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2025148_12	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-2025148_13	PHROG	phrog_348	minor head protein	head and packaging
UHGV-2025148_13	eggNOG-mapper	476272.RUMHYD_02857	NA	NA
UHGV-2025148_13	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2025148_14	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2025148_14	UniRef90	UniRef90_UPI001D03FC16	phage head-tail connector protein	NA
UHGV-2025148_14	eggNOG-mapper	476272.RUMHYD_02856	Phage gp6-like head-tail connector protein	NA
UHGV-2025148_14	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2025148_14	Structural annotation	PF05135	NA	NA
UHGV-2025148_15	UniRef90	UniRef90_UPI001D05A857	head fiber protein	NA
UHGV-2025148_15	eggNOG-mapper	1232443.BAIA02000078_gene28	domain, Protein	NA
UHGV-2025148_15	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-2025148_15	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-2025148_16	PHROG	phrog_840	major head protein	head and packaging
UHGV-2025148_16	UniRef90	UniRef90_A0A2N5P5Q7	Phage capsid protein	NA
UHGV-2025148_16	eggNOG-mapper	294382.Q5YA70_9CAUD	NA	NA
UHGV-2025148_16	Structural annotation	PF03864, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-2025148_17	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-2025148_17	UniRef90	UniRef90_A0A3A5TW83	NA	NA
UHGV-2025148_17	eggNOG-mapper	272558.10176153	NA	NA
UHGV-2025148_17	Pfam	PF14265	NA	DUF4355
UHGV-2025148_17	Structural annotation	PF14265	NA	NA
UHGV-2025148_18	KOfam	K07584	NA	NA
UHGV-2025148_18	PHROG	phrog_4478	peptidase	other
UHGV-2025148_18	UniRef90	UniRef90_A0A415S8E3	Ribosomal-processing cysteine protease Prp	NA
UHGV-2025148_18	eggNOG-mapper	411470.RUMGNA_03236	Cysteine protease Prp	NA
UHGV-2025148_18	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-2025148_18	COG	COG2868	NA	NA
UHGV-2025148_18	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-2025148_19	eggNOG-mapper	1304866.K413DRAFT_0808	NA	NA
UHGV-2025148_19	Structural annotation	PF10827	NA	NA
UHGV-2025148_20	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2025148_20	UniRef90	UniRef90_A0A2N5P5J9	Phage_Mu_F domain-containing protein	NA
UHGV-2025148_20	eggNOG-mapper	1232453.BAIF02000011_gene3354	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-2025148_20	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2025148_20	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2025148_20	COG	COG2369	NA	NA
UHGV-2025148_20	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-2025148_21	PHROG	phrog_64	portal protein	head and packaging
UHGV-2025148_21	UniRef90	UniRef90_A0A2N5PAZ2	Phage portal protein	NA
UHGV-2025148_21	eggNOG-mapper	1235796.C815_00925	Phage portal protein, SPP1 family	NA
UHGV-2025148_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2025148_21	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-2025148_21	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-2025148_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2025148_22	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2025148_22	UniRef90	UniRef90_A0A2N5P5F6	Terminase	NA
UHGV-2025148_22	eggNOG-mapper	1430331.EP10_10340	Phage terminase, large subunit	NA
UHGV-2025148_22	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2025148_22	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2025148_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2025148_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-2025148_22	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2025148_23	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2025148_23	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2025148_23	UniRef90	UniRef90_A0A855HE54	Terminase small subunit	NA
UHGV-2025148_23	eggNOG-mapper	1235792.C808_05330	Terminase small subunit	NA
UHGV-2025148_23	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2025148_23	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2025148_23	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2025148_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2025148_24	UniRef90	UniRef90_A0A412MDT8	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-2025148_24	eggNOG-mapper	411462.DORLON_00800	NA	NA
UHGV-2025148_24	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2025148_24	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-2025148_25	PHROG	phrog_7024	NA	unknown function
UHGV-2025148_25	eggNOG-mapper	994573.T472_0211090	NA	NA
UHGV-2025148_27	eggNOG-mapper	411470.RUMGNA_02203	NA	NA
UHGV-2025148_29	PHROG	phrog_15198	NA	unknown function
UHGV-2025148_29	UniRef90	UniRef90_UPI001D04EA1D	NA	NA
UHGV-2025148_29	Pfam	PF04448	NA	DUF551
UHGV-2025148_36	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-2025148_36	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-2025148_36	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-2025148_36	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-2025148_36	Structural annotation	PF14354, TIGR03655, COG3811	NA	NA
UHGV-2025148_37	eggNOG-mapper	97139.C824_00134	NA	NA
UHGV-2025148_38	Structural annotation	NF041290	NA	NA
UHGV-2025148_39	PHROG	phrog_23374	NA	unknown function
UHGV-2025148_39	eggNOG-mapper	1256908.HMPREF0373_00664	NA	NA
UHGV-2025148_41	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-2025148_41	UniRef90	UniRef90_UPI00156EF603	NA	NA
UHGV-2025148_41	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-2025148_41	Pfam	PF06048	NA	DUF927
UHGV-2025148_41	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-2025148_41	COG	COG5519	NA	NA
UHGV-2025148_41	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-2025148_42	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-2025148_42	PHROG	phrog_11992	NA	unknown function
UHGV-2025148_42	UniRef90	UniRef90_UPI00156FEB22	CHC2 zinc finger domain-containing protein	NA
UHGV-2025148_42	eggNOG-mapper	1304866.K413DRAFT_0824	CHC2 zinc finger	NA
UHGV-2025148_42	PADLOC	drt-UG29	DRT	DRT
UHGV-2025148_42	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-2025148_42	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-2025148_42	Structural annotation	PF01807, PF00401	NA	NA
UHGV-2025148_43	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-2025148_43	UniRef90	UniRef90_A0A1C5UKT4	ERCC4 domain-containing protein	NA
UHGV-2025148_43	eggNOG-mapper	658655.HMPREF0988_02583	ERCC4 domain	NA
UHGV-2025148_43	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-2025148_43	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-2025148_44	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2025148_44	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2025148_44	UniRef90	UniRef90_A0A1C5QS41	Single-stranded DNA-binding protein	NA
UHGV-2025148_44	eggNOG-mapper	411460.RUMTOR_02067	NA	NA
UHGV-2025148_44	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2025148_44	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2025148_44	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2025148_44	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2025148_44	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2025148_45	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2025148_45	UniRef90	UniRef90_A0A6N2RMY2	ERF superfamily protein	NA
UHGV-2025148_45	eggNOG-mapper	1484479.DI14_04910	ERF superfamily	NA
UHGV-2025148_45	Pfam	PF04404	ERF superfamily	ERF
UHGV-2025148_45	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-2025148_47	PHROG	phrog_30234	NA	unknown function
UHGV-2025148_47	eggNOG-mapper	33035.JPJF01000071_gene4461	NA	NA
UHGV-2025148_50	eggNOG-mapper	1235792.C808_03089	NA	NA
UHGV-2025148_51	PHROG	phrog_2011	anti-repressor Ant	transcription regulation
UHGV-2025148_51	UniRef90	UniRef90_UPI0004656795	Bro-N domain-containing protein	NA
UHGV-2025148_51	eggNOG-mapper	33035.JPJF01000057_gene3118	BRO family, N-terminal domain	NA
UHGV-2025148_51	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2025148_51	COG	COG3617	Prophage antirepressor	NA
UHGV-2025148_51	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-2025148_56	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-2025148_56	UniRef90	UniRef90_A0A2N5PI67	Transcriptional regulator	NA
UHGV-2025148_56	eggNOG-mapper	411470.RUMGNA_03232	NA	NA
UHGV-2025148_56	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-2025148_56	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-2025148_56	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2025148_56	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-2025148_57	UniRef90	UniRef90_A0A2N5PI32	NA	NA
UHGV-2025148_57	eggNOG-mapper	411470.RUMGNA_03231	NA	NA
UHGV-2025148_57	Pfam	PF05339	NA	DUF739
UHGV-2025148_57	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2025148_57	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-2025148_58	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2025148_58	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2025148_58	UniRef90	UniRef90_A0A2N5PI64	Transcriptional regulator	NA
UHGV-2025148_58	eggNOG-mapper	411470.RUMGNA_03230	sequence-specific DNA binding	NA
UHGV-2025148_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2025148_58	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2025148_58	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-2025148_59	PHROG	phrog_87	metallo-protease	other
UHGV-2025148_59	UniRef90	UniRef90_F7JQG6	Peptidase_M78 domain-containing protein	NA
UHGV-2025148_59	eggNOG-mapper	411470.RUMGNA_03229	NA	NA
UHGV-2025148_59	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2025148_59	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2025148_59	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2025148_60	PHROG	phrog_1847	NA	unknown function
UHGV-2025148_60	UniRef90	UniRef90_A0A3A6GS55	NA	NA
UHGV-2025148_60	eggNOG-mapper	1235792.C808_05258	NA	NA
UHGV-2025148_60	Pfam	PF13250	NA	DUF4041
UHGV-2025148_60	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-2025148_60	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-2025148_60	Structural annotation	PF13250	NA	NA
UHGV-2025148_61	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2025148_61	PHROG	phrog_95	integrase	integration and excision
UHGV-2025148_61	UniRef90	UniRef90_R5TPY9	Resolvase N-terminal domain protein	NA
UHGV-2025148_61	eggNOG-mapper	1235792.C808_03104	NA	NA
UHGV-2025148_61	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2025148_61	Pfam	PF07508	Recombinase	Recombinase
UHGV-2025148_61	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2025148_61	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2025148_61	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA