UHGV-2025331

Genome information

Genome length 35,804 bps

CDS count 51

Completeness 99.90% (high-quality)

geNomad score 0.9742

Prediction confidence Confident

Genome information
Genome ID	UHGV-2025331
vOTU ID	vOTU-008932
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029118\|Ga0168844_100034\|provirus_32718_71740
BioSample	SAMEA2737843
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9742
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.25
Jumbo phage	No

Genome content
Genome length	35,804 bps
GC content	44.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	95.79%
Average CDS length	675.24 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2025331_2	PHROG	phrog_4575	NA	unknown function
UHGV-2025331_2	eggNOG-mapper	575615.HMPREF0670_02458	NA	NA
UHGV-2025331_3	KOfam	K07273	acm; lysozyme	NA
UHGV-2025331_3	PHROG	phrog_291	endolysin	lysis
UHGV-2025331_3	UniRef90	UniRef90_A0A1C6IMI8	Autolytic lysozyme	NA
UHGV-2025331_3	eggNOG-mapper	246199.CUS_5914	hydrolase, family 25	NA
UHGV-2025331_3	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2025331_3	Pfam	PF01476	LysM domain	LysM
UHGV-2025331_3	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2025331_3	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-2025331_4	PHROG	phrog_1863	NA	unknown function
UHGV-2025331_4	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-2025331_5	PHROG	phrog_13256	NA	unknown function
UHGV-2025331_5	eggNOG-mapper	1160721.RBI_II00522	NA	NA
UHGV-2025331_6	PHROG	phrog_134	NA	unknown function
UHGV-2025331_6	UniRef90	UniRef90_A0A374ERE4	XkdX family protein	NA
UHGV-2025331_6	eggNOG-mapper	478749.BRYFOR_07560	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-2025331_6	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-2025331_6	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-2025331_6	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-2025331_8	eggNOG-mapper	1410617.JHXH01000006_gene232	NA	NA
UHGV-2025331_8	Structural annotation	PF10651	NA	NA
UHGV-2025331_10	PHROG	phrog_9680	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
UHGV-2025331_10	UniRef90	UniRef90_R5LL83	KID repeat-containing protein	NA
UHGV-2025331_10	eggNOG-mapper	1160721.RBI_II00526	NA	NA
UHGV-2025331_10	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-2025331_11	PHROG	phrog_1194	NA	unknown function
UHGV-2025331_11	eggNOG-mapper	1160721.RBI_II00527	NA	NA
UHGV-2025331_11	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2025331_12	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2025331_12	UniRef90	UniRef90_R6TDK7	Phage-related protein-like protein	NA
UHGV-2025331_12	eggNOG-mapper	1226322.HMPREF1545_00059	tape measure	NA
UHGV-2025331_12	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2025331_12	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2025331_13	PHROG	phrog_706	NA	unknown function
UHGV-2025331_13	UniRef90	UniRef90_UPI001B3C82AE	Gp15 family bacteriophage protein	NA
UHGV-2025331_13	eggNOG-mapper	1449050.JNLE01000003_gene3882	Bacteriophage Gp15 protein	NA
UHGV-2025331_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2025331_13	Structural annotation	PF06854	NA	NA
UHGV-2025331_14	PHROG	phrog_11299	NA	unknown function
UHGV-2025331_14	eggNOG-mapper	1226322.HMPREF1545_00057	NA	NA
UHGV-2025331_14	Structural annotation	PF20378	NA	NA
UHGV-2025331_15	PHROG	phrog_3099	NA	unknown function
UHGV-2025331_15	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-2025331_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2025331_16	PHROG	phrog_3266	tail completion	connector
UHGV-2025331_16	eggNOG-mapper	411902.CLOBOL_00130	NA	NA
UHGV-2025331_16	Structural annotation	PF20765	NA	NA
UHGV-2025331_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2025331_17	UniRef90	UniRef90_A0A1M7NJ72	Minor capsid protein	NA
UHGV-2025331_17	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-2025331_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2025331_17	Structural annotation	PF11114	NA	NA
UHGV-2025331_18	PHROG	phrog_3366	NA	unknown function
UHGV-2025331_18	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-2025331_18	Pfam	PF20536	NA	DUF6751
UHGV-2025331_18	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-2025331_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2025331_19	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-2025331_19	eggNOG-mapper	1304866.K413DRAFT_3039	NA	NA
UHGV-2025331_20	PHROG	phrog_544	major head protein	head and packaging
UHGV-2025331_20	UniRef90	UniRef90_R6T873	Major head protein	NA
UHGV-2025331_20	eggNOG-mapper	936580.HMPREF1516_0718	NA	NA
UHGV-2025331_20	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-2025331_20	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2025331_21	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2025331_21	UniRef90	UniRef90_R6U550	Phage minor structural protein GP20	NA
UHGV-2025331_21	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-2025331_21	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2025331_21	Structural annotation	PF06810	NA	NA
UHGV-2025331_22	PHROG	phrog_872	NA	unknown function
UHGV-2025331_22	UniRef90	UniRef90_A0A373V416	NA	NA
UHGV-2025331_22	eggNOG-mapper	1226322.HMPREF1545_00781	NA	NA
UHGV-2025331_22	Pfam	PF11195	NA	DUF2829
UHGV-2025331_22	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-2025331_22	Structural annotation	PF11195	NA	NA
UHGV-2025331_23	Structural annotation	PF12305	NA	NA
UHGV-2025331_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2025331_24	UniRef90	UniRef90_R6SXL7	Phage minor capsid protein 2	NA
UHGV-2025331_24	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-2025331_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2025331_24	COG	COG2369	NA	NA
UHGV-2025331_24	Structural annotation	PF06152	NA	NA
UHGV-2025331_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-2025331_25	UniRef90	UniRef90_R6TDI6	Phage portal protein SPP1 Gp6-like	NA
UHGV-2025331_25	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-2025331_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2025331_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2025331_26	PHROG	phrog_18557	terminase large subunit	head and packaging
UHGV-2025331_26	UniRef90	UniRef90_A0A1C6IMR2	Phage terminase, large subunit, PBSX family	NA
UHGV-2025331_26	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-2025331_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2025331_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2025331_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2025331_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-2025331_26	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2025331_29	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-2025331_31	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-2025331_31	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2025331_31	UniRef90	UniRef90_A0A356CZ91	DNA primase	NA
UHGV-2025331_31	eggNOG-mapper	1410670.JHXF01000015_gene2274	Phage plasmid primase, P4 family	NA
UHGV-2025331_31	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-2025331_31	Pfam	PF19263	NA	DUF5906
UHGV-2025331_31	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-2025331_31	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-2025331_31	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2025331_31	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-2025331_32	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2025331_32	UniRef90	UniRef90_A0A373SL44	NA	NA
UHGV-2025331_32	eggNOG-mapper	1423807.BACO01000050_gene1454	NA	NA
UHGV-2025331_32	Pfam	PF05037	NA	DUF669
UHGV-2025331_32	Structural annotation	PF05037, NF004948	NA	NA
UHGV-2025331_33	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2025331_33	UniRef90	UniRef90_A0A373SNE0	VRR-NUC domain-containing protein	NA
UHGV-2025331_33	eggNOG-mapper	1410670.JHXF01000015_gene2271	VRR_NUC	NA
UHGV-2025331_33	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2025331_33	Structural annotation	PF03838, MF_00130, NF002585, COG3331	NA	NA
UHGV-2025331_34	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-2025331_34	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2025331_34	UniRef90	UniRef90_A0A356CZA9	Helicase	NA
UHGV-2025331_34	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-2025331_34	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2025331_34	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2025331_34	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2025331_34	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2025331_34	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-2025331_35	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2025331_35	UniRef90	UniRef90_A0A373VPJ3	ATP-binding protein (Fragment)	NA
UHGV-2025331_35	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-2025331_35	Pfam	PF13479	AAA domain	AAA_24
UHGV-2025331_35	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2025331_36	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2025331_36	UniRef90	UniRef90_UPI0019171ADA	siphovirus Gp157 family protein	NA
UHGV-2025331_36	eggNOG-mapper	881621.LIV_2167	Siphovirus Gp157	NA
UHGV-2025331_36	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-2025331_36	Structural annotation	PF05565, NF002139	NA	NA
UHGV-2025331_37	PHROG	phrog_15609	NA	unknown function
UHGV-2025331_37	UniRef90	UniRef90_A0A373SLQ6	NA	NA
UHGV-2025331_37	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-2025331_37	Structural annotation	PF11300, NF033725	NA	NA
UHGV-2025331_38	PHROG	phrog_8470	NA	unknown function
UHGV-2025331_38	UniRef90	UniRef90_UPI0019175B9C	PcfJ domain-containing protein	NA
UHGV-2025331_38	eggNOG-mapper	641112.ACOK01000073_gene2870	PcfJ-like protein	NA
UHGV-2025331_38	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2025331_38	Structural annotation	PF14284	NA	NA
UHGV-2025331_39	PHROG	phrog_38338	NA	unknown function
UHGV-2025331_39	UniRef90	UniRef90_UPI00137B3A8C	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-2025331_39	eggNOG-mapper	693746.OBV_24020	NA	NA
UHGV-2025331_43	Structural annotation	PF11372	NA	NA
UHGV-2025331_45	PHROG	phrog_14088	NA	unknown function
UHGV-2025331_45	UniRef90	UniRef90_A0A374HW23	Carboxypeptidase	NA
UHGV-2025331_45	eggNOG-mapper	1235802.C823_04730	NA	NA
UHGV-2025331_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2025331_46	UniRef90	UniRef90_A0A373VQ70	XRE family transcriptional regulator	NA
UHGV-2025331_46	eggNOG-mapper	411460.RUMTOR_02057	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2025331_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2025331_47	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-2025331_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2025331_47	UniRef90	UniRef90_A0A373VPW9	XRE family transcriptional regulator	NA
UHGV-2025331_47	eggNOG-mapper	1304866.K413DRAFT_3003	addiction module antidote protein HigA	NA
UHGV-2025331_47	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2025331_47	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-2025331_47	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-2025331_48	PHROG	phrog_20936	NA	unknown function
UHGV-2025331_48	UniRef90	UniRef90_A0A374E958	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2025331_48	eggNOG-mapper	861450.HMPREF0080_02020	NA	NA
UHGV-2025331_48	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2025331_48	Structural annotation	PF06114	NA	NA
UHGV-2025331_50	UniRef90	UniRef90_UPI001C126F91	copper amine oxidase N-terminal domain-containing protein	NA
UHGV-2025331_50	eggNOG-mapper	445972.ANACOL_01856	NA	NA
UHGV-2025331_51	KOfam	K14059	int; integrase	NA
UHGV-2025331_51	PHROG	phrog_1	integrase	integration and excision
UHGV-2025331_51	UniRef90	UniRef90_A0A1C6FGR9	Integrase	NA
UHGV-2025331_51	eggNOG-mapper	1408823.AXUS01000024_gene2685	Arm DNA-binding domain	NA
UHGV-2025331_51	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2025331_51	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2025331_51	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2025331_51	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA