UHGV-2025481

Genome information

Genome length 32,807 bps

CDS count 48

Completeness 79.90% (medium-quality)

geNomad score 0.9715

Prediction confidence Confident

Genome information
Genome ID	UHGV-2025481
vOTU ID	vOTU-017296
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029121\|Ga0168811_100250\|provirus_2_53578
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.90% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9715
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.3
Jumbo phage	No

Genome content
Genome length	32,807 bps
GC content	38.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	94.96%
Average CDS length	652.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2025481_1	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-2025481_1	PHROG	phrog_56	DNA methyltransferase	other
UHGV-2025481_1	UniRef90	UniRef90_A0A1C6HHY1	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-2025481_1	eggNOG-mapper	411902.CLOBOL_03426	COG COG0338 Site-specific DNA methylase	NA
UHGV-2025481_1	PADLOC	MTase_II_00080	Type II methyltransferase	RM
UHGV-2025481_1	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-2025481_1	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-2025481_1	COG	COG0338	DNA-adenine methylase	NA
UHGV-2025481_1	Structural annotation	PF02086, MF_00934, TIGR00571, COG0338	NA	NA
UHGV-2025481_2	PHROG	phrog_443	holin	lysis
UHGV-2025481_2	UniRef90	UniRef90_UPI0008299632	holin	NA
UHGV-2025481_2	eggNOG-mapper	1163671.JAGI01000002_gene1943	Putative lactococcus lactis phage r1t holin	NA
UHGV-2025481_2	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2025481_2	Structural annotation	PF16945	NA	NA
UHGV-2025481_3	PHROG	phrog_774	NA	unknown function
UHGV-2025481_3	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-2025481_4	PHROG	phrog_918	NA	unknown function
UHGV-2025481_4	UniRef90	UniRef90_UPI00164AB9AF	NA	NA
UHGV-2025481_4	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-2025481_4	Pfam	PF19791	NA	DUF6275
UHGV-2025481_4	Structural annotation	PF19791	NA	NA
UHGV-2025481_5	KOfam	K07273	acm; lysozyme	NA
UHGV-2025481_5	PHROG	phrog_291	endolysin	lysis
UHGV-2025481_5	UniRef90	UniRef90_R6NXV5	Glycoside Hydrolase Family 25-like lysozyme/endolysin	NA
UHGV-2025481_5	eggNOG-mapper	1120933.ATUY01000002_gene158	lysozyme activity	NA
UHGV-2025481_5	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2025481_5	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-2025481_5	Structural annotation	PF01183, TIGR04303, COG3757, COG5492	NA	NA
UHGV-2025481_7	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-2025481_7	Pfam	PF21262	Exosome complex component RRP40, S1 domain	RRP40_S1
UHGV-2025481_7	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2025481_7	Structural annotation	PF10651, PF00541, NF040788	NA	NA
UHGV-2025481_9	PHROG	phrog_18110	NA	unknown function
UHGV-2025481_9	UniRef90	UniRef90_A0A373KYA3	Prophage_tail domain-containing protein	NA
UHGV-2025481_9	eggNOG-mapper	1280689.AUJC01000007_gene3306	Phage minor structural protein	NA
UHGV-2025481_9	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2025481_9	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2025481_9	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-2025481_9	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-2025481_10	UniRef90	UniRef90_A0A1G4WVH7	Phage-related protein	NA
UHGV-2025481_10	eggNOG-mapper	411459.RUMOBE_00925	phage tail	NA
UHGV-2025481_10	COG	COG4722	Phage-related protein YomH	NA
UHGV-2025481_10	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-2025481_11	PHROG	phrog_19074	NA	unknown function
UHGV-2025481_11	UniRef90	UniRef90_A0A1G4WU66	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-2025481_11	eggNOG-mapper	33035.JPJF01000033_gene2265	Phage-related minor tail protein	NA
UHGV-2025481_11	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2025481_11	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2025481_11	COG	COG5283	Phage-related tail protein	NA
UHGV-2025481_11	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2025481_13	PHROG	phrog_706	NA	unknown function
UHGV-2025481_13	UniRef90	UniRef90_A0A1G4WU45	Bacteriophage Gp15 protein	NA
UHGV-2025481_13	eggNOG-mapper	1499683.CCFF01000017_gene2567	Bacteriophage Gp15 protein	NA
UHGV-2025481_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2025481_13	Structural annotation	PF06854	NA	NA
UHGV-2025481_14	PHROG	phrog_4450	NA	unknown function
UHGV-2025481_14	UniRef90	UniRef90_A0A413QHF8	AP endonuclease	NA
UHGV-2025481_14	eggNOG-mapper	536233.CLO_1573	NA	NA
UHGV-2025481_14	Pfam	PF20378	NA	DUF6673
UHGV-2025481_14	Structural annotation	PF20378	NA	NA
UHGV-2025481_15	PHROG	phrog_3099	NA	unknown function
UHGV-2025481_15	UniRef90	UniRef90_T3DT99	S-l_SbsC_C domain-containing protein	NA
UHGV-2025481_15	eggNOG-mapper	411490.ANACAC_00772	NA	NA
UHGV-2025481_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2025481_16	PHROG	phrog_3266	tail completion	connector
UHGV-2025481_16	UniRef90	UniRef90_A0A373KYC6	Chloramphenicol resistance protein	NA
UHGV-2025481_16	eggNOG-mapper	525255.HMPREF0077_0380	NA	NA
UHGV-2025481_16	Structural annotation	PF12691	NA	NA
UHGV-2025481_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2025481_17	UniRef90	UniRef90_A0A413QH49	Capsid protein	NA
UHGV-2025481_17	eggNOG-mapper	1160721.RBI_II00534	Minor capsid protein	NA
UHGV-2025481_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2025481_17	Structural annotation	PF11114	NA	NA
UHGV-2025481_18	PHROG	phrog_3366	NA	unknown function
UHGV-2025481_18	Pfam	PF20536	NA	DUF6751
UHGV-2025481_18	Structural annotation	PF20536, TIGR01563, COG1853	NA	NA
UHGV-2025481_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2025481_19	eggNOG-mapper	663278.Ethha_0095	NA	NA
UHGV-2025481_20	PHROG	phrog_212	major head protein	head and packaging
UHGV-2025481_20	UniRef90	UniRef90_A0A373KYA5	Phage capsid protein	NA
UHGV-2025481_20	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-2025481_20	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-2025481_21	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2025481_21	UniRef90	UniRef90_A0A1G4WVL7	Phage minor structural protein GP20	NA
UHGV-2025481_21	eggNOG-mapper	1401067.HMPREF0872_00300	Phage minor structural protein GP20	NA
UHGV-2025481_21	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2025481_21	Structural annotation	PF06810	NA	NA
UHGV-2025481_22	eggNOG-mapper	663278.Ethha_0092	NA	NA
UHGV-2025481_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2025481_23	UniRef90	UniRef90_A0A3D0XA46	Phage capsid protein	NA
UHGV-2025481_23	eggNOG-mapper	663278.Ethha_0091	NA	NA
UHGV-2025481_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2025481_23	COG	COG2369	NA	NA
UHGV-2025481_23	Structural annotation	PF06152, PF12636	NA	NA
UHGV-2025481_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-2025481_24	UniRef90	UniRef90_A0A3D0XCF1	Phage capsid protein	NA
UHGV-2025481_24	eggNOG-mapper	545697.HMPREF0216_02845	NA	NA
UHGV-2025481_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2025481_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2025481_25	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2025481_25	UniRef90	UniRef90_A0A373L0G3	PBSX family phage terminase large subunit	NA
UHGV-2025481_25	eggNOG-mapper	693746.OBV_18030	Phage terminase large subunit	NA
UHGV-2025481_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2025481_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2025481_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-2025481_25	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2025481_27	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-2025481_27	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-2025481_27	UniRef90	UniRef90_A0A413QHD3	NGN domain-containing protein	NA
UHGV-2025481_27	eggNOG-mapper	883156.HMPREF9282_00720	Participates in transcription elongation, termination and antitermination	NA
UHGV-2025481_27	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-2025481_27	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-2025481_27	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-2025481_28	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-2025481_28	UniRef90	UniRef90_A0A373L007	NA	NA
UHGV-2025481_28	eggNOG-mapper	411902.CLOBOL_06314	NA	NA
UHGV-2025481_28	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-2025481_28	Structural annotation	PF11985	NA	NA
UHGV-2025481_29	PHROG	phrog_25462	NA	unknown function
UHGV-2025481_29	UniRef90	UniRef90_A0A413QHC4	Type VI secretion protein	NA
UHGV-2025481_29	eggNOG-mapper	1160721.RBI_II00547	NA	NA
UHGV-2025481_29	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-2025481_30	PHROG	phrog_462	lipoprotein	other
UHGV-2025481_30	eggNOG-mapper	663278.Ethha_1583	NA	NA
UHGV-2025481_31	PHROG	phrog_836	late transcriptional activator	transcription regulation
UHGV-2025481_31	UniRef90	UniRef90_A0A373L0N7	Mor domain-containing protein	NA
UHGV-2025481_31	eggNOG-mapper	411483.FAEPRAA2165_03398	Mor transcription activator family	NA
UHGV-2025481_31	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-2025481_31	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-2025481_31	Structural annotation	PF08765, NF040785, COG5566	NA	NA
UHGV-2025481_32	PHROG	phrog_286	NA	unknown function
UHGV-2025481_32	UniRef90	UniRef90_A0A373KYV3	NA	NA
UHGV-2025481_32	eggNOG-mapper	445972.ANACOL_00525	NA	NA
UHGV-2025481_32	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-2025481_32	Structural annotation	PF06252	NA	NA
UHGV-2025481_33	eggNOG-mapper	742733.HMPREF9469_02889	NA	NA
UHGV-2025481_34	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-2025481_34	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-2025481_34	UniRef90	UniRef90_A0A413QH66	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-2025481_34	eggNOG-mapper	411902.CLOBOL_06320	toxin-antitoxin pair type II binding	NA
UHGV-2025481_34	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-2025481_34	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-2025481_34	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-2025481_34	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-2025481_35	PHROG	phrog_5671	NA	unknown function
UHGV-2025481_35	eggNOG-mapper	293826.Amet_0399	NA	NA
UHGV-2025481_39	KOfam	K02450	gspA; general secretion pathway protein A	NA
UHGV-2025481_39	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-2025481_39	UniRef90	UniRef90_A0A1G4WQZ7	AAA domain-containing protein	NA
UHGV-2025481_39	eggNOG-mapper	1160721.RBI_II00554	AAA domain	NA
UHGV-2025481_39	Pfam	PF13401	AAA domain	AAA_22
UHGV-2025481_39	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-2025481_39	Structural annotation	PF13401, MF_01407, TIGR03015, COG2842	NA	NA
UHGV-2025481_40	PHROG	phrog_310	transposase	integration and excision
UHGV-2025481_40	UniRef90	UniRef90_A0A373KYW6	MerR family transcriptional regulator	NA
UHGV-2025481_40	eggNOG-mapper	445972.ANACOL_00518	Mu transposase, C-terminal	NA
UHGV-2025481_40	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-2025481_40	Pfam	PF09039	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
UHGV-2025481_40	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-2025481_40	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-2025481_40	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-2025481_42	Structural annotation	PF02796, COG2771	NA	NA
UHGV-2025481_44	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-2025481_44	Structural annotation	PF09871, COG4014	NA	NA
UHGV-2025481_45	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-2025481_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2025481_45	UniRef90	UniRef90_A0A1G4WDY9	Helix-turn-helix	NA
UHGV-2025481_45	eggNOG-mapper	366602.Caul_4362	Helix-turn-helix XRE-family like proteins	NA
UHGV-2025481_45	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2025481_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2025481_45	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2025481_45	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2025481_46	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2025481_46	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2025481_46	UniRef90	UniRef90_A0A1C6GZH6	LexA repressor	NA
UHGV-2025481_46	eggNOG-mapper	1160721.RBI_II00559	Peptidase S24-like	NA
UHGV-2025481_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2025481_46	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2025481_46	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2025481_46	Structural annotation	PF00717, PF12844, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-2025481_47	UniRef90	UniRef90_D4LC97	Dockerin type I repeat	NA