UHGV-2025738

Genome information

Genome length 34,320 bps

CDS count 52

Completeness 98.95% (high-quality)

geNomad score 0.9522

Prediction confidence Confident

Genome information
Genome ID	UHGV-2025738
vOTU ID	vOTU-011226
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029094\|Ga0169183_100134\|provirus_3_34322
BioSample	SAMEA2579917
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.95% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9522
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	7.04
Jumbo phage	No

Genome content
Genome length	34,320 bps
GC content	44.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	90.35%
Average CDS length	600.06 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2025738_4	PHROG	phrog_1084	NA	unknown function
UHGV-2025738_4	UniRef90	UniRef90_A0A3D5BBX6	BppU_N domain-containing protein	NA
UHGV-2025738_4	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-2025738_4	Structural annotation	PF10651, NF032891, COG5456	NA	NA
UHGV-2025738_7	PHROG	phrog_5783	NA	unknown function
UHGV-2025738_7	UniRef90	UniRef90_A0A7X9D7D9	NYN domain-containing protein	NA
UHGV-2025738_7	eggNOG-mapper	394221.Mmar10_2212	NYN domain	NA
UHGV-2025738_7	Pfam	PF01936	NYN domain	NYN
UHGV-2025738_7	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-2025738_7	Structural annotation	PF01936, MF_04140, TIGR00288, COG1432	NA	NA
UHGV-2025738_10	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-2025738_12	PHROG	phrog_6121	virion structural protein	head and packaging
UHGV-2025738_12	UniRef90	UniRef90_A0A1Q6U9C7	Peptidase S74 domain-containing protein	NA
UHGV-2025738_13	KOfam	K03790	rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]	NA
UHGV-2025738_13	PHROG	phrog_4470	acyl-CoA N-acyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-2025738_13	UniRef90	UniRef90_UPI0011430C09	GNAT family N-acetyltransferase	NA
UHGV-2025738_13	eggNOG-mapper	156889.Mmc1_1721	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins	NA
UHGV-2025738_13	COG	COG1670	Protein N-acetyltransferase, RimJ/RimL family	NA
UHGV-2025738_13	Structural annotation	PF11039, MF_02210, NF011709, COG1670	NA	NA
UHGV-2025738_14	PHROG	phrog_5107	amidase	lysis
UHGV-2025738_14	eggNOG-mapper	156889.Mmc1_1720	NA	NA
UHGV-2025738_14	Structural annotation	PF11134, MF_03037, TIGR04312, COG5276	NA	NA
UHGV-2025738_15	PHROG	phrog_6013	tail protein	tail
UHGV-2025738_15	eggNOG-mapper	156889.Mmc1_1719	NA	NA
UHGV-2025738_15	Structural annotation	PF20387	NA	NA
UHGV-2025738_16	PHROG	phrog_20268	NA	unknown function
UHGV-2025738_17	PHROG	phrog_9953	major head protein	head and packaging
UHGV-2025738_17	UniRef90	UniRef90_A0A3D5BA26	Phage major capsid protein	NA
UHGV-2025738_17	eggNOG-mapper	156889.Mmc1_1716	NA	NA
UHGV-2025738_17	NCBIFam	NF033394.1	phage major capsid protein	NA
UHGV-2025738_17	Structural annotation	PF17236, MF_04133, NF033394, COG4653	NA	NA
UHGV-2025738_18	eggNOG-mapper	1041142.ATTP01000021_gene185	NA	NA
UHGV-2025738_20	PHROG	phrog_12082	portal protein	head and packaging
UHGV-2025738_20	UniRef90	UniRef90_UPI001E3B6A58	molecular chaperone	NA
UHGV-2025738_20	eggNOG-mapper	156889.Mmc1_1012	Band 7 protein	NA
UHGV-2025738_20	COG	COG2268	NA	NA
UHGV-2025738_20	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-2025738_21	KOfam	K04078	groES, HSPE1; chaperonin GroES	NA
UHGV-2025738_21	PHROG	phrog_3188	co-chaperonin GroES	other
UHGV-2025738_21	UniRef90	UniRef90_A0A3D5BCW9	10 kDa chaperonin	NA
UHGV-2025738_21	eggNOG-mapper	756272.Plabr_3985	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter	NA
UHGV-2025738_21	Pfam	PF00166	Chaperonin 10 Kd subunit	Cpn10
UHGV-2025738_21	COG	COG0234	Co-chaperonin GroES (HSP10)	NA
UHGV-2025738_21	Structural annotation	PF00166, MF_00580, NF001531, COG0234	NA	NA
UHGV-2025738_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2025738_22	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2025738_22	UniRef90	UniRef90_A0A3C1FAQ4	Terminase	NA
UHGV-2025738_22	eggNOG-mapper	450851.PHZ_c2212	Terminase RNaseH-like domain	NA
UHGV-2025738_22	COG	COG5323	Phage large terminase packaging protein	NA
UHGV-2025738_22	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-2025738_23	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-2025738_27	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2025738_27	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2025738_27	UniRef90	UniRef90_A0A1Z9PWF4	Cytosine-specific methyltransferase	NA
UHGV-2025738_27	eggNOG-mapper	1127692.HMPREF9075_02379	C-5 cytosine-specific DNA methylase	NA
UHGV-2025738_27	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-2025738_27	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2025738_27	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2025738_27	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2025738_27	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-2025738_28	PHROG	phrog_4212	NA	unknown function
UHGV-2025738_28	UniRef90	UniRef90_R6I612	UPF0335 protein BN570_00055	NA
UHGV-2025738_28	eggNOG-mapper	331869.BAL199_16788	NA	NA
UHGV-2025738_28	Pfam	PF10073	GapR-like, DNA-binding domain	GapR_DNA-bd
UHGV-2025738_28	NCBIFam	NF010247.0	hypothetical protein	NA
UHGV-2025738_28	COG	COG3750	NA	NA
UHGV-2025738_28	HAMAP	MF_00797	UPF0335 protein	NA
UHGV-2025738_29	Structural annotation	PF07603, TIGR02145	NA	NA
UHGV-2025738_30	PHROG	phrog_799	DNA methyltransferase	other
UHGV-2025738_30	UniRef90	UniRef90_UPI0007D00A58	class I SAM-dependent methyltransferase	NA
UHGV-2025738_30	eggNOG-mapper	1123263.AUKY01000096_gene1823	DNA restriction-modification system	NA
UHGV-2025738_30	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-2025738_30	Structural annotation	PF19587, MF_01872, NF011489, COG0286	NA	NA
UHGV-2025738_31	Structural annotation	PF02376, NF040507, COG4800	NA	NA
UHGV-2025738_32	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2025738_32	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2025738_32	UniRef90	UniRef90_A0A3D5BAV1	Peptidase_S24 domain-containing protein	NA
UHGV-2025738_32	eggNOG-mapper	1430440.MGMSRv2_0712	Peptidase S24-like	NA
UHGV-2025738_32	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2025738_32	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-2025738_32	Structural annotation	PF00717, PF02316, MF_00015, NF007621, COG2932	NA	NA
UHGV-2025738_34	eggNOG-mapper	1121097.JCM15093_3614	NA	NA
UHGV-2025738_34	Pfam	PF07603	NA	DUF1566
UHGV-2025738_34	Structural annotation	PF07603, TIGR02145	NA	NA
UHGV-2025738_39	Structural annotation	PF11195	NA	NA
UHGV-2025738_40	Structural annotation	PF12961, MF_00684, COG4043	NA	NA
UHGV-2025738_41	Structural annotation	PF13973, MF_01194, NF010729, COG4873	NA	NA
UHGV-2025738_44	PHROG	phrog_98	NA	unknown function
UHGV-2025738_44	UniRef90	UniRef90_A0A843H253	YopX domain-containing protein	NA
UHGV-2025738_44	eggNOG-mapper	220668.lp_0653	YopX protein	NA
UHGV-2025738_44	Pfam	PF09643	YopX protein	YopX
UHGV-2025738_44	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2025738_44	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2025738_50	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2025738_50	PHROG	phrog_95	integrase	integration and excision
UHGV-2025738_50	UniRef90	UniRef90_A0A356F6B9	Recombinase domain-containing protein (Fragment)	NA
UHGV-2025738_50	eggNOG-mapper	1437425.CSEC_0908	Resolvase, N terminal domain	NA
UHGV-2025738_50	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2025738_50	Pfam	PF07508	Recombinase	Recombinase
UHGV-2025738_50	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2025738_50	Structural annotation	PF00239, PF07508, PF18822, NF041201, COG1961	NA	NA
UHGV-2025738_51	KOfam	K02902	RP-L28, MRPL28, rpmB; large subunit ribosomal protein L28	NA
UHGV-2025738_51	UniRef90	UniRef90_R6HV85	50S ribosomal protein L28	NA
UHGV-2025738_51	eggNOG-mapper	412597.AEPN01000004_gene3184	Belongs to the bacterial ribosomal protein bL28 family	NA
UHGV-2025738_51	Pfam	PF00830	Ribosomal L28 family	Ribosomal_L28
UHGV-2025738_51	NCBIFam	TIGR00009.1	50S ribosomal protein L28	NA
UHGV-2025738_51	COG	COG0227	Ribosomal protein L28	NA
UHGV-2025738_51	HAMAP	MF_00373	Large ribosomal subunit protein bL28 [rpmB]	NA
UHGV-2025738_52	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2025738_52	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2025738_52	UniRef90	UniRef90_R6I350	Replicative DNA helicase	NA
UHGV-2025738_52	eggNOG-mapper	1244869.H261_06936	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	NA
UHGV-2025738_52	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2025738_52	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2025738_52	NCBIFam	NF006606.0	replicative DNA helicase	NA
UHGV-2025738_52	COG	COG0305	Replicative DNA helicase	NA
UHGV-2025738_52	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA