UHGV-2025764

Genome information

Genome length 31,935 bps

CDS count 41

Completeness 78.51% (medium-quality)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-2025764
vOTU ID	vOTU-041509
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029230\|Ga0168685_100036\|provirus_165629_197563
BioSample	SAMEA2737666
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.51% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.45
Jumbo phage	No

Genome content
Genome length	31,935 bps
GC content	55.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	94.70%
Average CDS length	740.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2025764_1	KOfam	K07486	K07486; transposase	NA
UHGV-2025764_1	PHROG	phrog_2199	transposase	integration and excision
UHGV-2025764_1	UniRef90	UniRef90_UPI001F21DBE8	IS110 family transposase	NA
UHGV-2025764_1	eggNOG-mapper	756499.Desde_3336	Transposase IS116 IS110 IS902	NA
UHGV-2025764_1	Pfam	PF01548	Transposase	DEDD_Tnp_IS110
UHGV-2025764_1	Pfam	PF02371	Transposase IS116/IS110/IS902 family	Transposase_20
UHGV-2025764_1	NCBIFam	NF033542.1	IS110 family transposase	NA
UHGV-2025764_1	COG	COG3547	Transposase	NA
UHGV-2025764_1	Structural annotation	PF01548, PF02371, MF_00651, NF033542, COG3547	NA	NA
UHGV-2025764_3	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-2025764_3	PHROG	phrog_1499	NA	unknown function
UHGV-2025764_3	UniRef90	UniRef90_UPI001C108D96	AAA family ATPase	NA
UHGV-2025764_3	eggNOG-mapper	1232449.BAHV02000018_gene1548	AAA domain	NA
UHGV-2025764_3	Pfam	PF13476	AAA domain	AAA_23
UHGV-2025764_3	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2025764_3	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-2025764_4	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2025764_4	UniRef90	UniRef90_UPI001C10B6A5	AAA family ATPase	NA
UHGV-2025764_4	eggNOG-mapper	645991.Sgly_0321	AAA domain	NA
UHGV-2025764_4	Pfam	PF13479	AAA domain	AAA_24
UHGV-2025764_4	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-2025764_5	PHROG	phrog_2698	NA	unknown function
UHGV-2025764_5	UniRef90	UniRef90_UPI00195E7908	NA	NA
UHGV-2025764_5	eggNOG-mapper	1127695.HMPREF9163_00377	NA	NA
UHGV-2025764_5	Structural annotation	PF05037	NA	NA
UHGV-2025764_6	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-2025764_6	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2025764_6	UniRef90	UniRef90_UPI001C10D103	DEAD/DEAH box helicase	NA
UHGV-2025764_6	eggNOG-mapper	1235798.C817_03499	helicase superfamily c-terminal domain	NA
UHGV-2025764_6	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2025764_6	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2025764_6	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2025764_6	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2025764_6	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-2025764_7	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-2025764_7	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2025764_7	UniRef90	UniRef90_UPI001C104E70	AAA family ATPase	NA
UHGV-2025764_7	eggNOG-mapper	645991.Sgly_0325	Primase C terminal 2 (PriCT-2)	NA
UHGV-2025764_7	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-2025764_7	Pfam	PF13481	AAA domain	AAA_25
UHGV-2025764_7	COG	COG3598	RecA-family ATPase	NA
UHGV-2025764_7	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-2025764_8	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2025764_8	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2025764_8	UniRef90	UniRef90_A0A658JVZ2	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2025764_8	eggNOG-mapper	478749.BRYFOR_07588	endodeoxyribonuclease RusA	NA
UHGV-2025764_8	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2025764_8	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2025764_8	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2025764_10	PHROG	phrog_954	DNA methyltransferase	other
UHGV-2025764_10	UniRef90	UniRef90_UPI001C3EDFA5	class I SAM-dependent methyltransferase	NA
UHGV-2025764_10	eggNOG-mapper	679201.HMPREF9334_00469	methyltransferase	NA
UHGV-2025764_10	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-2025764_10	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-2025764_10	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-2025764_11	PHROG	phrog_6568	NA	unknown function
UHGV-2025764_12	eggNOG-mapper	693746.OBV_25230	NA	NA
UHGV-2025764_12	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-2025764_13	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-2025764_13	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-2025764_13	UniRef90	UniRef90_A0A1Y3XJ19	HicB family protein	NA
UHGV-2025764_13	eggNOG-mapper	1122925.KB895394_gene1703	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-2025764_13	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-2025764_13	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-2025764_13	Structural annotation	PF15919, COG1598	NA	NA
UHGV-2025764_14	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-2025764_14	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2025764_14	UniRef90	UniRef90_A0A1Y3XIW8	Toxin-antitoxin system, toxin component, HicA family protein	NA
UHGV-2025764_14	eggNOG-mapper	592026.GCWU0000282_000315	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-2025764_14	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-2025764_14	Structural annotation	PF07927, COG1724	NA	NA
UHGV-2025764_15	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2025764_15	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2025764_15	UniRef90	UniRef90_A0A353GYF1	Terminase small subunit	NA
UHGV-2025764_15	eggNOG-mapper	1462526.BN990_03868	Terminase small subunit	NA
UHGV-2025764_15	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2025764_15	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2025764_15	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2025764_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2025764_16	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2025764_16	UniRef90	UniRef90_A0A372V3S5	Terminase	NA
UHGV-2025764_16	eggNOG-mapper	645991.Sgly_0335	Phage terminase, large subunit, PBSX family	NA
UHGV-2025764_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-2025764_16	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2025764_17	PHROG	phrog_533	portal protein	head and packaging
UHGV-2025764_17	UniRef90	UniRef90_UPI001875FE3B	capsid protein	NA
UHGV-2025764_17	eggNOG-mapper	1507.HMPREF0262_01175	NA	NA
UHGV-2025764_17	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2025764_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2025764_18	UniRef90	UniRef90_UPI000A270255	polymorphic toxin type 50 domain-containing protein	NA
UHGV-2025764_18	eggNOG-mapper	1507.HMPREF0262_01176	Phage minor capsid protein 2	NA
UHGV-2025764_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2025764_18	Pfam	PF18810	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
UHGV-2025764_18	COG	COG2369	NA	NA
UHGV-2025764_18	Structural annotation	PF06152, PF01129, NF041404	NA	NA
UHGV-2025764_21	PHROG	phrog_422	major head protein	head and packaging
UHGV-2025764_21	UniRef90	UniRef90_UPI0018750F33	phage capsid protein	NA
UHGV-2025764_21	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-2025764_21	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2025764_22	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2025764_22	eggNOG-mapper	1151292.QEW_2431	NA	NA
UHGV-2025764_23	PHROG	phrog_8710	NA	unknown function
UHGV-2025764_23	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-2025764_23	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-2025764_24	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2025764_24	eggNOG-mapper	1507.HMPREF0262_01182	NA	NA
UHGV-2025764_25	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-2025764_25	UniRef90	UniRef90_UPI000A26871F	minor capsid protein	NA
UHGV-2025764_25	eggNOG-mapper	1151292.QEW_2427	NA	NA
UHGV-2025764_25	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-2025764_25	Structural annotation	PF12691, COG5003	NA	NA
UHGV-2025764_26	PHROG	phrog_820	major tail protein	tail
UHGV-2025764_26	eggNOG-mapper	1507.HMPREF0262_01184	domain, Protein	NA
UHGV-2025764_26	COG	COG5492	NA	NA
UHGV-2025764_26	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2025764_28	PHROG	phrog_8680	NA	unknown function
UHGV-2025764_28	UniRef90	UniRef90_UPI0015711ED3	NA	NA
UHGV-2025764_28	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-2025764_28	Pfam	PF14386	NA	DUF4417
UHGV-2025764_28	Structural annotation	PF14386	NA	NA
UHGV-2025764_29	PHROG	phrog_8300	NA	unknown function
UHGV-2025764_29	eggNOG-mapper	1507.HMPREF0262_01185	NA	NA
UHGV-2025764_29	Structural annotation	PF06896	NA	NA
UHGV-2025764_30	PHROG	phrog_8355	NA	unknown function
UHGV-2025764_30	UniRef90	UniRef90_UPI0018A7EA5D	Gp15 family bacteriophage protein	NA
UHGV-2025764_30	eggNOG-mapper	1507.HMPREF0262_01186	NA	NA
UHGV-2025764_30	Structural annotation	PF06854	NA	NA
UHGV-2025764_31	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2025764_31	UniRef90	UniRef90_A0A0H2YR97	Putative membrane protein	NA
UHGV-2025764_31	eggNOG-mapper	665956.HMPREF1032_03628	domain protein	NA
UHGV-2025764_31	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-2025764_31	COG	COG1511	NA	NA
UHGV-2025764_32	PHROG	phrog_1194	NA	unknown function
UHGV-2025764_32	eggNOG-mapper	411471.SUBVAR_06933	NA	NA
UHGV-2025764_32	Structural annotation	PF20458, TIGR02126, COG4718	NA	NA
UHGV-2025764_33	PHROG	phrog_18190	NA	unknown function
UHGV-2025764_33	UniRef90	UniRef90_R0CTZ0	Peptidase S74 domain-containing protein	NA
UHGV-2025764_33	eggNOG-mapper	411471.SUBVAR_06932	NA	NA
UHGV-2025764_34	PHROG	phrog_372	tail protein	tail
UHGV-2025764_34	UniRef90	UniRef90_A0A351TJT1	Pilus assembly protein	NA
UHGV-2025764_34	eggNOG-mapper	1416759.AYMR01000009_gene3061	NA	NA
UHGV-2025764_34	Pfam	PF05895	NA	DUF859
UHGV-2025764_35	eggNOG-mapper	1121866.AUGK01000006_gene893	NA	NA
UHGV-2025764_39	UniRef90	UniRef90_A0A521IRB0	Chitin-binding type-3 domain-containing protein	NA
UHGV-2025764_39	eggNOG-mapper	1154860.SAG0136_08155	NA	NA
UHGV-2025764_39	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-2025764_39	Structural annotation	PF14600	NA	NA
UHGV-2025764_40	PHROG	phrog_1863	NA	unknown function
UHGV-2025764_40	eggNOG-mapper	552398.HMPREF0866_01158	NA	NA
UHGV-2025764_41	PHROG	phrog_1129	holin	lysis
UHGV-2025764_41	UniRef90	UniRef90_R6H6W8	Putative holin	NA
UHGV-2025764_41	eggNOG-mapper	742740.HMPREF9474_03522	NA	NA
UHGV-2025764_41	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2025764_41	Structural annotation	PF06946	NA	NA