UHGV-2025915

Genome information

Genome length 33,272 bps

CDS count 49

Completeness 95.13% (high-quality)

geNomad score 0.9705

Prediction confidence Confident

Genome information
Genome ID	UHGV-2025915
vOTU ID	vOTU-072412
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029082\|Ga0169230_100071\|provirus_5088_38359
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.13% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9705
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.52
Jumbo phage	No

Genome content
Genome length	33,272 bps
GC content	40.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	90.98%
Average CDS length	620.33 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2025915_1	PHROG	phrog_199	holin	lysis
UHGV-2025915_1	UniRef90	UniRef90_A0A350VIW1	Holin	NA
UHGV-2025915_1	eggNOG-mapper	411462.DORLON_00766	Bacteriophage holin family	NA
UHGV-2025915_1	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2025915_1	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2025915_1	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2025915_1	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2025915_3	PHROG	phrog_24103	NA	unknown function
UHGV-2025915_3	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-2025915_3	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2025915_4	COG	COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	NA
UHGV-2025915_5	PHROG	phrog_15594	NA	unknown function
UHGV-2025915_5	eggNOG-mapper	862969.SCI_1223	NA	NA
UHGV-2025915_5	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-2025915_6	eggNOG-mapper	1235798.C817_04596	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-2025915_6	COG	COG4675	Phage tail collar domain	NA
UHGV-2025915_7	PHROG	phrog_11037	NA	unknown function
UHGV-2025915_7	UniRef90	UniRef90_A0A0M6WKQ1	Phage_lysozyme2 domain-containing protein	NA
UHGV-2025915_7	eggNOG-mapper	33035.JPJF01000023_gene3229	NA	NA
UHGV-2025915_7	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-2025915_7	Structural annotation	PF18013	NA	NA
UHGV-2025915_8	PHROG	phrog_13289	tail protein	tail
UHGV-2025915_8	UniRef90	UniRef90_A0A0M6WI67	Prophage_tail domain-containing protein	NA
UHGV-2025915_8	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-2025915_8	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2025915_8	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2025915_8	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-2025915_8	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2025915_9	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2025915_9	UniRef90	UniRef90_A0A350VIV2	Phage tail protein	NA
UHGV-2025915_9	eggNOG-mapper	1232452.BAIB02000007_gene1615	phage tail	NA
UHGV-2025915_9	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2025915_9	COG	COG4722	Phage-related protein YomH	NA
UHGV-2025915_9	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2025915_10	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-2025915_10	UniRef90	UniRef90_A0A350VIV1	Phage tail tape measure protein	NA
UHGV-2025915_10	eggNOG-mapper	1035184.HMPREF1042_1328	Phage tail tape measure protein	NA
UHGV-2025915_10	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2025915_10	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2025915_10	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2025915_12	PHROG	phrog_88	major tail protein	tail
UHGV-2025915_12	UniRef90	UniRef90_A0A1Q9J4Y1	Phage tail protein	NA
UHGV-2025915_12	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2025915_12	COG	COG5492	NA	NA
UHGV-2025915_12	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2025915_13	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2025915_13	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-2025915_13	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2025915_13	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-2025915_14	Structural annotation	PF05657	NA	NA
UHGV-2025915_15	UniRef90	UniRef90_A0A844KCF4	Phage head closure protein	NA
UHGV-2025915_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2025915_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-2025915_17	UniRef90	UniRef90_UPI00156F222D	phage major capsid protein	NA
UHGV-2025915_17	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-2025915_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2025915_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2025915_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2025915_17	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-2025915_18	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2025915_18	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2025915_18	UniRef90	UniRef90_A0A0M6WHX9	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2025915_18	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-2025915_18	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2025915_18	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2025915_18	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-2025915_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-2025915_19	UniRef90	UniRef90_UPI00156D5DC9	phage portal protein	NA
UHGV-2025915_19	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-2025915_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2025915_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2025915_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2025915_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2025915_20	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-2025915_20	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-2025915_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2025915_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2025915_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2025915_20	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2025915_21	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-2025915_21	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-2025915_21	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-2025915_21	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2025915_21	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2025915_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2025915_23	UniRef90	UniRef90_UPI001D05F87A	RNA polymerase subunit sigma-24	NA
UHGV-2025915_23	eggNOG-mapper	588581.Cpap_2562	NA	NA
UHGV-2025915_23	Structural annotation	PF07374, MF_00674, NF001074	NA	NA
UHGV-2025915_24	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2025915_24	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-2025915_24	eggNOG-mapper	411902.CLOBOL_03891	NA	NA
UHGV-2025915_24	Structural annotation	PF21578	NA	NA
UHGV-2025915_27	UniRef90	UniRef90_A0A355TJG3	ASCH domain-containing protein	NA
UHGV-2025915_27	eggNOG-mapper	397290.C810_00411	ASCH domain	NA
UHGV-2025915_27	Pfam	PF04266	ASCH domain	ASCH
UHGV-2025915_27	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-2025915_27	Structural annotation	PF08819, MF_00684, NF003443, COG4933	NA	NA
UHGV-2025915_29	Structural annotation	NF011508	NA	NA
UHGV-2025915_31	PHROG	phrog_15077	NA	unknown function
UHGV-2025915_31	UniRef90	UniRef90_A5ZPN2	NA	NA
UHGV-2025915_31	eggNOG-mapper	97139.C824_05986	NA	NA
UHGV-2025915_31	Structural annotation	NF033725	NA	NA
UHGV-2025915_32	PHROG	phrog_8470	NA	unknown function
UHGV-2025915_32	UniRef90	UniRef90_A0A1T4Y1A3	PcfJ-like protein (Fragment)	NA
UHGV-2025915_32	eggNOG-mapper	999413.HMPREF1094_04705	PcfJ-like protein	NA
UHGV-2025915_32	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2025915_33	PHROG	phrog_8470	NA	unknown function
UHGV-2025915_33	UniRef90	UniRef90_UPI000CDA663D	PcfJ domain-containing protein	NA
UHGV-2025915_33	eggNOG-mapper	999413.HMPREF1094_04705	PcfJ-like protein	NA
UHGV-2025915_34	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-2025915_35	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-2025915_35	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-2025915_36	KOfam	K14059	int; integrase	NA
UHGV-2025915_36	PHROG	phrog_1	integrase	integration and excision
UHGV-2025915_36	UniRef90	UniRef90_A0A0M6WVP0	Tyr recombinase domain-containing protein	NA
UHGV-2025915_36	eggNOG-mapper	1280698.AUJS01000010_gene818	Belongs to the 'phage' integrase family	NA
UHGV-2025915_36	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-2025915_36	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2025915_36	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2025915_36	Structural annotation	PF00589, PF14659, MF_02055, NF001399, COG4974	NA	NA
UHGV-2025915_37	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2025915_37	PHROG	phrog_1	integrase	integration and excision
UHGV-2025915_37	UniRef90	UniRef90_A0A6L5YHS5	Tyrosine-type recombinase/integrase	NA
UHGV-2025915_37	eggNOG-mapper	397291.C804_01139	Phage integrase, N-terminal SAM-like domain	NA
UHGV-2025915_37	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-2025915_37	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2025915_37	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2025915_37	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-2025915_38	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-2025915_38	PHROG	phrog_5696	NA	unknown function
UHGV-2025915_38	UniRef90	UniRef90_A0A0M6WYD5	N6_Mtase domain-containing protein	NA
UHGV-2025915_38	eggNOG-mapper	1245471.PCA10_p0930	N-6 DNA Methylase	NA
UHGV-2025915_38	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-2025915_38	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-2025915_38	Structural annotation	COG0286	NA	NA
UHGV-2025915_39	Structural annotation	PF18066, NF007780, COG1544	NA	NA
UHGV-2025915_40	eggNOG-mapper	411902.CLOBOL_05701	RNase H	NA
UHGV-2025915_40	COG	COG0328	Ribonuclease HI	NA
UHGV-2025915_42	Structural annotation	PF09486, TIGR03090, COG5420	NA	NA
UHGV-2025915_45	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2025915_45	UniRef90	UniRef90_U2Q2K9	DNA-binding helix-turn-helix protein	NA
UHGV-2025915_45	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-2025915_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2025915_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2025915_45	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2025915_46	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2025915_46	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2025915_46	UniRef90	UniRef90_C4Z801	SOS-response transcriptional repressor, LexA	NA
UHGV-2025915_46	eggNOG-mapper	1321820.HMPREF1983_00958	Helix-turn-helix XRE-family like proteins	NA
UHGV-2025915_46	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2025915_46	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2025915_46	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2025915_46	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-2025915_47	KOfam	K10716	kch, trkA, mthK, pch; voltage-gated potassium channel	NA
UHGV-2025915_47	PHROG	phrog_7872	NA	unknown function
UHGV-2025915_47	UniRef90	UniRef90_A0A350VIR8	Ion transporter	NA
UHGV-2025915_47	eggNOG-mapper	1211844.CBLM010000091_gene3165	Ion transport protein	NA
UHGV-2025915_47	Pfam	PF00520	Ion transport protein	Ion_trans
UHGV-2025915_47	COG	COG0569	Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain	NA
UHGV-2025915_47	Structural annotation	PF00520, NF040645	NA	NA
UHGV-2025915_48	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-2025915_48	PHROG	phrog_1412	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UHGV-2025915_48	UniRef90	UniRef90_UPI001BC64A01	Type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-2025915_48	eggNOG-mapper	1235792.C808_05257	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-2025915_48	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-2025915_48	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-2025915_48	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-2025915_49	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2025915_49	PHROG	phrog_95	integrase	integration and excision
UHGV-2025915_49	UniRef90	UniRef90_C4Z7Z8	Site-specific recombinase	NA
UHGV-2025915_49	eggNOG-mapper	742765.HMPREF9457_02089	Resolvase, N terminal domain	NA
UHGV-2025915_49	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2025915_49	Pfam	PF07508	Recombinase	Recombinase
UHGV-2025915_49	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2025915_49	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2025915_49	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA