UHGV-2026226

Genome information

Genome length 43,906 bps

CDS count 64

Completeness 99.90% (high-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-2026226
vOTU ID	vOTU-061882
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029112\|Ga0168820_100327\|provirus_169_44074
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.83
Jumbo phage	No

Genome content
Genome length	43,906 bps
GC content	42.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	92.13%
Average CDS length	634.92 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2026226_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2026226_1	PHROG	phrog_670	endolysin	lysis
UHGV-2026226_1	UniRef90	UniRef90_UPI00192054C9	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2026226_1	eggNOG-mapper	1235802.C823_05611	Ami_2	NA
UHGV-2026226_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2026226_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-2026226_1	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-2026226_2	PHROG	phrog_443	holin	lysis
UHGV-2026226_2	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-2026226_2	eggNOG-mapper	1235802.C823_05612	Putative lactococcus lactis phage r1t holin	NA
UHGV-2026226_2	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2026226_2	Structural annotation	PF16945	NA	NA
UHGV-2026226_3	PHROG	phrog_937	hemolysin	other
UHGV-2026226_4	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-2026226_4	Structural annotation	NF040910	NA	NA
UHGV-2026226_5	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-2026226_6	eggNOG-mapper	742733.HMPREF9469_01801	NA	NA
UHGV-2026226_7	PHROG	phrog_17196	kinase	other
UHGV-2026226_7	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-2026226_7	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-2026226_8	PHROG	phrog_18190	NA	unknown function
UHGV-2026226_8	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-2026226_8	eggNOG-mapper	397290.C810_01435	NA	NA
UHGV-2026226_8	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2026226_8	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-2026226_9	PHROG	phrog_1194	NA	unknown function
UHGV-2026226_9	eggNOG-mapper	742733.HMPREF9469_01808	NA	NA
UHGV-2026226_9	Pfam	PF20458	NA	DUF6711
UHGV-2026226_9	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2026226_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2026226_10	UniRef90	UniRef90_A0A448W7L1	Phage-related protein	NA
UHGV-2026226_10	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-2026226_10	COG	COG5283	Phage-related tail protein	NA
UHGV-2026226_11	PHROG	phrog_706	NA	unknown function
UHGV-2026226_11	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-2026226_11	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-2026226_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2026226_11	Structural annotation	PF06854	NA	NA
UHGV-2026226_12	UniRef90	UniRef90_A0A412KF72	RNA polymerase subunit sigma	NA
UHGV-2026226_12	Structural annotation	PF10666	NA	NA
UHGV-2026226_13	PHROG	phrog_3099	NA	unknown function
UHGV-2026226_13	eggNOG-mapper	1235790.C805_00082	NA	NA
UHGV-2026226_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2026226_14	PHROG	phrog_3266	tail completion	connector
UHGV-2026226_14	eggNOG-mapper	397290.C810_05232	NA	NA
UHGV-2026226_14	Structural annotation	PF12691	NA	NA
UHGV-2026226_15	PHROG	phrog_3366	NA	unknown function
UHGV-2026226_15	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-2026226_15	Structural annotation	PF20536, COG5614	NA	NA
UHGV-2026226_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2026226_16	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-2026226_16	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-2026226_17	PHROG	phrog_283	major head protein	head and packaging
UHGV-2026226_17	UniRef90	UniRef90_A0A173REC9	p22 coat protein-gene protein 5	NA
UHGV-2026226_17	eggNOG-mapper	411461.DORFOR_01167	P22 coat protein - gene protein 5	NA
UHGV-2026226_17	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-2026226_17	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2026226_18	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2026226_18	UniRef90	UniRef90_UPI000E538A87	phage scaffolding protein	NA
UHGV-2026226_18	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-2026226_18	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2026226_21	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2026226_21	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-2026226_21	eggNOG-mapper	663278.Ethha_0091	NA	NA
UHGV-2026226_21	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2026226_21	COG	COG2369	NA	NA
UHGV-2026226_21	Structural annotation	PF06152, PF12636	NA	NA
UHGV-2026226_22	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2026226_22	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-2026226_22	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-2026226_22	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2026226_22	Structural annotation	PF11114	NA	NA
UHGV-2026226_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-2026226_23	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-2026226_23	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-2026226_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2026226_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2026226_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2026226_24	UniRef90	UniRef90_A0A6L5YJQ3	PBSX family phage terminase large subunit	NA
UHGV-2026226_24	eggNOG-mapper	397290.C810_05187	Phage terminase large subunit	NA
UHGV-2026226_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2026226_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2026226_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-2026226_24	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2026226_25	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2026226_25	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-2026226_25	UniRef90	UniRef90_UPI00164AF8F0	terminase small subunit	NA
UHGV-2026226_25	eggNOG-mapper	1415774.U728_838	terminase, small subunit	NA
UHGV-2026226_25	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-2026226_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2026226_25	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2026226_25	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-2026226_27	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2026226_27	PHROG	phrog_3502	NA	unknown function
UHGV-2026226_27	UniRef90	UniRef90_A0A374HT58	LexA_DNA_bind domain-containing protein	NA
UHGV-2026226_27	eggNOG-mapper	742733.HMPREF9469_01830	LexA DNA binding domain	NA
UHGV-2026226_27	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-2026226_27	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2026226_27	Structural annotation	PF01726, MF_00732, NF000243, COG1321	NA	NA
UHGV-2026226_28	UniRef90	UniRef90_UPI001C02D4D3	ABC transporter ATP-binding protein	NA
UHGV-2026226_29	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2026226_29	PHROG	phrog_1	integrase	integration and excision
UHGV-2026226_29	UniRef90	UniRef90_UPI001C034698	tyrosine-type recombinase/integrase	NA
UHGV-2026226_29	eggNOG-mapper	610130.Closa_0719	Belongs to the 'phage' integrase family	NA
UHGV-2026226_29	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-2026226_29	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2026226_29	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2026226_29	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-2026226_30	eggNOG-mapper	1131462.DCF50_p1314	NA	NA
UHGV-2026226_31	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2026226_31	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2026226_31	UniRef90	UniRef90_A0A173S745	Putative methyltransferase	NA
UHGV-2026226_31	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-2026226_31	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2026226_31	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2026226_31	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2026226_31	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-2026226_32	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2026226_32	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-2026226_32	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-2026226_32	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2026226_32	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-2026226_35	PHROG	phrog_8684	NA	unknown function
UHGV-2026226_35	UniRef90	UniRef90_A0A417PEY2	YopX domain-containing protein	NA
UHGV-2026226_35	eggNOG-mapper	742723.HMPREF9477_00921	YopX protein	NA
UHGV-2026226_35	Pfam	PF09643	YopX protein	YopX
UHGV-2026226_35	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2026226_35	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2026226_36	PHROG	phrog_7711	NA	unknown function
UHGV-2026226_36	UniRef90	UniRef90_UPI001C38CAD2	Lar family restriction alleviation protein	NA
UHGV-2026226_36	eggNOG-mapper	268407.PWYN_15580	NA	NA
UHGV-2026226_37	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-2026226_39	PHROG	phrog_15198	NA	unknown function
UHGV-2026226_39	UniRef90	UniRef90_A0A173SA50	NA	NA
UHGV-2026226_39	eggNOG-mapper	1232453.BAIF02000057_gene1153	NA	NA
UHGV-2026226_39	Pfam	PF04448	NA	DUF551
UHGV-2026226_41	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2026226_41	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2026226_41	UniRef90	UniRef90_UPI000E81B795	ATP-binding protein	NA
UHGV-2026226_41	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-2026226_41	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-2026226_41	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2026226_41	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-2026226_42	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2026226_42	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-2026226_42	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-2026226_42	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-2026226_43	PHROG	phrog_398	NA	unknown function
UHGV-2026226_43	UniRef90	UniRef90_UPI00068C968F	putative HNHc nuclease	NA
UHGV-2026226_43	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-2026226_43	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-2026226_43	Structural annotation	PF16784	NA	NA
UHGV-2026226_44	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2026226_44	UniRef90	UniRef90_A0A3R6H986	NA	NA
UHGV-2026226_44	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-2026226_44	Pfam	PF06378	NA	DUF1071
UHGV-2026226_44	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-2026226_46	Structural annotation	PF00412	NA	NA
UHGV-2026226_49	Structural annotation	PF12750	NA	NA
UHGV-2026226_57	UniRef90	UniRef90_A0A416W0Y7	XRE family transcriptional regulator	NA
UHGV-2026226_57	eggNOG-mapper	411461.DORFOR_00030	Helix-turn-helix XRE-family like proteins	NA
UHGV-2026226_57	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2026226_57	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2026226_58	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2026226_58	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2026226_58	UniRef90	UniRef90_R9J0L9	HTH cro/C1-type domain-containing protein	NA
UHGV-2026226_58	eggNOG-mapper	397288.C806_00131	Transcriptional	NA
UHGV-2026226_58	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2026226_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2026226_58	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2026226_59	PHROG	phrog_87	metallo-protease	other
UHGV-2026226_59	UniRef90	UniRef90_A0A316M7A2	Peptidase_M78 domain-containing protein	NA
UHGV-2026226_59	eggNOG-mapper	397288.C806_00132	Zn peptidase	NA
UHGV-2026226_59	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2026226_59	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2026226_59	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2026226_60	PHROG	phrog_26910	NA	unknown function
UHGV-2026226_60	UniRef90	UniRef90_UPI001F1D4362	zinc ribbon domain-containing protein	NA
UHGV-2026226_60	eggNOG-mapper	394503.Ccel_0822	NA	NA
UHGV-2026226_60	Structural annotation	PF13028, COG4875	NA	NA
UHGV-2026226_61	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2026226_61	PHROG	phrog_95	integrase	integration and excision
UHGV-2026226_61	UniRef90	UniRef90_A0A173S7T2	Resolvase, N terminal domain	NA
UHGV-2026226_61	eggNOG-mapper	411459.RUMOBE_00967	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-2026226_61	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2026226_61	Pfam	PF07508	Recombinase	Recombinase
UHGV-2026226_61	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2026226_61	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2026226_61	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-2026226_62	KOfam	K06334	cotJC; spore coat protein JC	NA
UHGV-2026226_62	PHROG	phrog_7573	NA	unknown function
UHGV-2026226_62	UniRef90	UniRef90_A0A844KSA5	Manganese catalase family protein	NA
UHGV-2026226_62	eggNOG-mapper	622312.ROSEINA2194_00921	PFAM Manganese containing catalase	NA
UHGV-2026226_62	Pfam	PF05067	Manganese containing catalase	Mn_catalase
UHGV-2026226_62	COG	COG3546	Mn-containing catalase (includes spore coat protein CotJC)	NA
UHGV-2026226_62	Structural annotation	PF05067, MF_00931, TIGR04535, COG3546	NA	NA
UHGV-2026226_63	eggNOG-mapper	585394.RHOM_06810	NA	NA
UHGV-2026226_64	UniRef90	UniRef90_A0A5P6VSS8	Tetratricopeptide repeat protein	NA
UHGV-2026226_64	eggNOG-mapper	585394.RHOM_06805	NA	NA