UHGV-2026482

Genome information

Genome length 35,134 bps

CDS count 65

Completeness 97.23% (high-quality)

geNomad score 0.9746

Prediction confidence Confident

Genome information
Genome ID	UHGV-2026482
vOTU ID	vOTU-008408
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029084\|Ga0169222_10053\|provirus_44858_79991
BioSample	SAMEA2579956
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.23% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9746
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.66
Jumbo phage	No

Genome content
Genome length	35,134 bps
GC content	27.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	92.25%
Average CDS length	502.52 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2026482_2	Structural annotation	PF09274, NF008671, COG4710	NA	NA
UHGV-2026482_4	KOfam	K03071	secB; preprotein translocase subunit SecB	NA
UHGV-2026482_4	PHROG	phrog_21664	NA	unknown function
UHGV-2026482_4	UniRef90	UniRef90_A0A1M6IG12	Preprotein translocase subunit SecB	NA
UHGV-2026482_4	eggNOG-mapper	86416.Clopa_1799	Preprotein translocase subunit SecB	NA
UHGV-2026482_4	Pfam	PF02556	Preprotein translocase subunit SecB	SecB
UHGV-2026482_4	COG	COG1952	Preprotein translocase subunit SecB	NA
UHGV-2026482_4	Structural annotation	PF02556, MF_00821, NF004394, COG1952	NA	NA
UHGV-2026482_6	PHROG	phrog_14664	NA	unknown function
UHGV-2026482_6	Structural annotation	PF00644, COG5654	NA	NA
UHGV-2026482_7	UniRef90	UniRef90_R7F968	Peptidoglycan-binding domain 1 protein	NA
UHGV-2026482_7	eggNOG-mapper	1121422.AUMW01000009_gene3264	Papain-like cysteine protease AvrRpt2	NA
UHGV-2026482_7	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-2026482_7	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-2026482_7	COG	COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	NA
UHGV-2026482_7	Structural annotation	PF03412, PF08239, NF040678, COG3807, COG3271	NA	NA
UHGV-2026482_8	Structural annotation	PF06946	NA	NA
UHGV-2026482_12	PHROG	phrog_24103	NA	unknown function
UHGV-2026482_12	eggNOG-mapper	742742.HMPREF9452_01288	NA	NA
UHGV-2026482_14	eggNOG-mapper	910314.HMPREF9220_1078	NA	NA
UHGV-2026482_14	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-2026482_16	UniRef90	UniRef90_A0A1Q6M1V5	Fibronectin type-III domain-containing protein	NA
UHGV-2026482_16	Structural annotation	PF05895, MF_00791, NF010681, COG2967	NA	NA
UHGV-2026482_17	Structural annotation	PF20747	NA	NA
UHGV-2026482_18	UniRef90	UniRef90_A0A1Q6K3Z9	Ricin B-type lectin domain-containing protein	NA
UHGV-2026482_18	eggNOG-mapper	502558.EGYY_09080	lysozyme activity	NA
UHGV-2026482_18	Pfam	PF14200	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
UHGV-2026482_18	COG	COG1404	Serine protease, subtilisin family	NA
UHGV-2026482_18	Structural annotation	PF00652, PF19586, PF13004, NF035930, COG4379	NA	NA
UHGV-2026482_19	eggNOG-mapper	411471.SUBVAR_05861	NA	NA
UHGV-2026482_19	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-2026482_21	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-2026482_21	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-2026482_21	UniRef90	UniRef90_A0A7U9JT69	Phage tail tape measure protein, TP901 family	NA
UHGV-2026482_21	eggNOG-mapper	35241.Q9AYV8_BPTU2	peptidoglycan catabolic process	NA
UHGV-2026482_21	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2026482_21	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2026482_21	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2026482_23	PHROG	phrog_709	NA	unknown function
UHGV-2026482_23	Structural annotation	PF11836	NA	NA
UHGV-2026482_24	PHROG	phrog_88	major tail protein	tail
UHGV-2026482_24	UniRef90	UniRef90_A0A1E8RGF9	Phage tail protein	NA
UHGV-2026482_24	eggNOG-mapper	1321782.HMPREF1986_01362	phage major tail protein, phi13 family	NA
UHGV-2026482_24	Pfam	PF06488	Phage tail tube protein	L_lac_phage_MSP
UHGV-2026482_24	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2026482_24	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-2026482_25	eggNOG-mapper	1145276.T479_12220	NA	NA
UHGV-2026482_25	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-2026482_26	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2026482_26	UniRef90	UniRef90_A0A0F4VPW6	NA	NA
UHGV-2026482_26	eggNOG-mapper	638301.HMPREF0444_1502	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2026482_26	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2026482_26	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2026482_27	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2026482_27	eggNOG-mapper	365048.Q0H236_9CAUD	NA	NA
UHGV-2026482_27	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2026482_28	PHROG	phrog_5223	neck protein	connector
UHGV-2026482_28	UniRef90	UniRef90_UPI00189ABEFE	DNA-packaging protein	NA
UHGV-2026482_28	eggNOG-mapper	1382358.JHVN01000024_gene1709	NA	NA
UHGV-2026482_29	PHROG	phrog_34916	tail fiber protein	tail
UHGV-2026482_30	PHROG	phrog_10	major head protein	head and packaging
UHGV-2026482_30	UniRef90	UniRef90_A0A1I6SHI5	Phage major capsid protein, HK97 family	NA
UHGV-2026482_30	eggNOG-mapper	1582155.A0A0A8WJR0_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-2026482_30	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2026482_30	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2026482_30	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2026482_31	KOfam	K06904	NA	NA
UHGV-2026482_31	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2026482_31	UniRef90	UniRef90_A0A7C6SI26	HK97 family phage prohead protease	NA
UHGV-2026482_31	eggNOG-mapper	1211817.CCAT010000007_gene1038	Caudovirus prohead serine protease	NA
UHGV-2026482_31	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2026482_31	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2026482_31	COG	COG3740	Phage head maturation protease	NA
UHGV-2026482_31	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2026482_32	PHROG	phrog_12	portal protein	head and packaging
UHGV-2026482_32	UniRef90	UniRef90_UPI000A35AB3D	phage portal protein	NA
UHGV-2026482_32	eggNOG-mapper	1094508.Tsac_2426	Portal protein	NA
UHGV-2026482_32	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2026482_32	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2026482_32	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2026482_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2026482_33	UniRef90	UniRef90_A0A1B1YAC1	Terminase	NA
UHGV-2026482_33	eggNOG-mapper	1094508.Tsac_2427	Phage Terminase	NA
UHGV-2026482_33	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2026482_33	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2026482_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2026482_33	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2026482_34	PHROG	phrog_1066	NA	unknown function
UHGV-2026482_34	eggNOG-mapper	318464.IO99_13770	NA	NA
UHGV-2026482_34	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-2026482_36	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2026482_36	UniRef90	UniRef90_A0A1Q6K3Q9	HNH domain-containing protein	NA
UHGV-2026482_36	eggNOG-mapper	543734.LCABL_11060	HNH endonuclease	NA
UHGV-2026482_36	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2026482_36	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2026482_36	Structural annotation	NF008448	NA	NA
UHGV-2026482_40	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2026482_40	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-2026482_40	Structural annotation	PF15456, NF008895, COG5034	NA	NA
UHGV-2026482_43	PHROG	phrog_3163	NA	unknown function
UHGV-2026482_49	eggNOG-mapper	1304866.K413DRAFT_4602	NA	NA
UHGV-2026482_53	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2026482_53	UniRef90	UniRef90_A0A377KMD4	Replication initiation and membrane attachment	NA
UHGV-2026482_53	eggNOG-mapper	796940.HMPREF9628_00167	NA	NA
UHGV-2026482_53	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2026482_53	Structural annotation	PF03444, NF041413, COG5625	NA	NA
UHGV-2026482_55	PHROG	phrog_7566	NA	unknown function
UHGV-2026482_59	Structural annotation	PF07471, NF033787	NA	NA
UHGV-2026482_60	Structural annotation	PF20385	NA	NA
UHGV-2026482_61	UniRef90	UniRef90_A0A3D1PJT4	HTH cro/C1-type domain-containing protein	NA
UHGV-2026482_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2026482_61	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2026482_62	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2026482_62	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2026482_62	UniRef90	UniRef90_A0A1Q6K3F1	HTH cro/C1-type domain-containing protein	NA
UHGV-2026482_62	eggNOG-mapper	536233.CLO_1400	Helix-turn-helix XRE-family like proteins	NA
UHGV-2026482_62	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2026482_62	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2026482_62	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2026482_63	Pfam	PF11163	NA	DUF2947
UHGV-2026482_64	PHROG	phrog_87	metallo-protease	other
UHGV-2026482_64	UniRef90	UniRef90_UPI001C10EA02	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2026482_64	eggNOG-mapper	332101.JIBU02000023_gene4734	Zn peptidase	NA
UHGV-2026482_64	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2026482_64	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2026482_64	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2026482_65	KOfam	K14059	int; integrase	NA
UHGV-2026482_65	PHROG	phrog_1	integrase	integration and excision
UHGV-2026482_65	UniRef90	UniRef90_R6DVW0	Phage integrase	NA
UHGV-2026482_65	eggNOG-mapper	1161902.HMPREF0378_0144	DNA integration	NA
UHGV-2026482_65	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-2026482_65	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2026482_65	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2026482_65	Structural annotation	PF00589, MF_02055, TIGR02224, COG4974	NA	NA