UHGV-2026656

Genome information

Genome length 40,391 bps

CDS count 55

Completeness 97.81% (high-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-2026656
vOTU ID	vOTU-014368
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029170\|Ga0120232_100015\|provirus_66999_107389
BioSample	SAMN03295850
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.81% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.05
Jumbo phage	No

Genome content
Genome length	40,391 bps
GC content	36.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	95.72%
Average CDS length	708.87 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2026656_2	PHROG	phrog_10797	NA	unknown function
UHGV-2026656_2	UniRef90	UniRef90_A0A1B1I041	Glycoprotease	NA
UHGV-2026656_2	eggNOG-mapper	883156.HMPREF9282_01266	NA	NA
UHGV-2026656_2	Structural annotation	PF06531	NA	NA
UHGV-2026656_3	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-2026656_3	PHROG	phrog_894	endolysin	lysis
UHGV-2026656_3	UniRef90	UniRef90_A0A496P8E9	NA	NA
UHGV-2026656_3	eggNOG-mapper	613026.HRAG_01219	NA	NA
UHGV-2026656_3	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-2026656_3	COG	COG3108	NA	NA
UHGV-2026656_3	Structural annotation	PF08291, COG3108	NA	NA
UHGV-2026656_5	PHROG	phrog_23091	NA	unknown function
UHGV-2026656_5	Structural annotation	PF05105, NF035928	NA	NA
UHGV-2026656_7	KOfam	K13925	pfbA; plasmin and fibronectin-binding protein A	NA
UHGV-2026656_7	UniRef90	UniRef90_A0A2S7ZGN5	Pectate_lyase_3 domain-containing protein	NA
UHGV-2026656_7	eggNOG-mapper	1150626.PHAMO_180136	NA	NA
UHGV-2026656_7	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-2026656_7	Structural annotation	PF05096, PF03906, MF_03008, TIGR03866, COG3204	NA	NA
UHGV-2026656_8	PHROG	phrog_9880	NA	unknown function
UHGV-2026656_8	UniRef90	UniRef90_D1YMD8	MuF_C domain-containing protein	NA
UHGV-2026656_8	eggNOG-mapper	699218.HMPREF0889_0277	NA	NA
UHGV-2026656_8	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-2026656_9	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-2026656_9	Structural annotation	PF01464, COG0741	NA	NA
UHGV-2026656_10	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-2026656_10	eggNOG-mapper	1401067.HMPREF0872_06765	NA	NA
UHGV-2026656_10	Structural annotation	PF05384, TIGR01010, COG3524	NA	NA
UHGV-2026656_11	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-2026656_11	UniRef90	UniRef90_UPI001D08FF44	NA	NA
UHGV-2026656_11	Pfam	PF11090	Bacteriophage T7, probable scaffold protein Gp13	Phage_T7_Gp13
UHGV-2026656_11	Structural annotation	PF11039, MF_02210, NF000165, COG1247	NA	NA
UHGV-2026656_12	PHROG	phrog_376	tail protein	tail
UHGV-2026656_12	UniRef90	UniRef90_A0A3A4JUE0	E1_FCCH domain-containing protein	NA
UHGV-2026656_12	eggNOG-mapper	1401067.HMPREF0872_06775	NA	NA
UHGV-2026656_12	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-2026656_13	PHROG	phrog_394	tail protein	tail
UHGV-2026656_13	eggNOG-mapper	1401067.HMPREF0872_06780	NA	NA
UHGV-2026656_13	Structural annotation	PF17212	NA	NA
UHGV-2026656_15	PHROG	phrog_427	NA	unknown function
UHGV-2026656_15	Structural annotation	PF21190	NA	NA
UHGV-2026656_16	PHROG	phrog_212	major head protein	head and packaging
UHGV-2026656_16	UniRef90	UniRef90_A0A239Z8I8	Phage capsid family	NA
UHGV-2026656_16	eggNOG-mapper	1401067.HMPREF0872_06795	NA	NA
UHGV-2026656_16	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-2026656_16	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2026656_17	PHROG	phrog_458	protease	other
UHGV-2026656_17	eggNOG-mapper	1401067.HMPREF0872_06800	NA	NA
UHGV-2026656_18	PHROG	phrog_528	NA	unknown function
UHGV-2026656_18	eggNOG-mapper	568816.Acin_1833	NA	NA
UHGV-2026656_19	PHROG	phrog_332	head-tail adaptor	connector
UHGV-2026656_19	UniRef90	UniRef90_UPI001D07F371	portal protein	NA
UHGV-2026656_19	eggNOG-mapper	1401067.HMPREF0872_06810	Bacteriophage head to tail connecting protein	NA
UHGV-2026656_19	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-2026656_19	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-2026656_21	PHROG	phrog_5902	NA	unknown function
UHGV-2026656_21	UniRef90	UniRef90_UPI0018A6EFE4	terminase	NA
UHGV-2026656_21	eggNOG-mapper	1200557.JHWV01000001_gene277	Terminase RNaseH-like domain	NA
UHGV-2026656_21	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-2026656_21	Structural annotation	PF03237, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2026656_22	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2026656_22	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2026656_22	UniRef90	UniRef90_A0A239Z9J1	Terminase small subunit	NA
UHGV-2026656_22	eggNOG-mapper	1280689.AUJC01000003_gene961	Terminase small subunit	NA
UHGV-2026656_22	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2026656_22	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2026656_22	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2026656_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2026656_26	UniRef90	UniRef90_UPI0013DFE289	NA	NA
UHGV-2026656_26	eggNOG-mapper	706434.HMPREF9429_00383	NA	NA
UHGV-2026656_26	Structural annotation	PF07374	NA	NA
UHGV-2026656_28	PHROG	phrog_21026	NA	unknown function
UHGV-2026656_31	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-2026656_31	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-2026656_31	UniRef90	UniRef90_UPI000AF5B6BD	dUTP diphosphatase	NA
UHGV-2026656_31	eggNOG-mapper	192875.XP_004364204.1	Deoxyuridine 5-triphosphate nucleotidohydrolase	NA
UHGV-2026656_31	Pfam	PF00692	dUTPase	dUTPase
UHGV-2026656_31	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-2026656_31	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-2026656_31	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-2026656_32	Structural annotation	PF13384, NF040595	NA	NA
UHGV-2026656_33	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2026656_33	UniRef90	UniRef90_A0A841R0Q1	Holliday junction resolvase	NA
UHGV-2026656_33	eggNOG-mapper	1200557.JHWV01000001_gene280	NA	NA
UHGV-2026656_33	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-2026656_34	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2026656_34	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2026656_34	UniRef90	UniRef90_UPI00196047F8	site-specific DNA-methyltransferase	NA
UHGV-2026656_34	eggNOG-mapper	749222.Nitsa_1817	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-2026656_34	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-2026656_34	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2026656_34	COG	COG0863	DNA modification methylase	NA
UHGV-2026656_34	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-2026656_35	PHROG	phrog_2882	DNA methyltransferase	other
UHGV-2026656_35	UniRef90	UniRef90_UPI000E75FDEB	DNA methyltransferase	NA
UHGV-2026656_35	eggNOG-mapper	565653.EGBG_01954	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-2026656_35	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2026656_35	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2026656_35	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-2026656_36	Structural annotation	PF11305, MF_01360	NA	NA
UHGV-2026656_37	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2026656_37	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2026656_37	UniRef90	UniRef90_UPI000750C286	single-stranded DNA-binding protein	NA
UHGV-2026656_37	eggNOG-mapper	936589.HMPREF1521_1228	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-2026656_37	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2026656_37	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2026656_37	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2026656_37	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2026656_37	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2026656_40	PHROG	phrog_9804	NA	unknown function
UHGV-2026656_40	Structural annotation	PF11417	NA	NA
UHGV-2026656_41	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-2026656_41	UniRef90	UniRef90_UPI0019608C6C	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-2026656_41	eggNOG-mapper	999425.HMPREF9186_02013	Phage replisome organizer, N-terminal domain protein	NA
UHGV-2026656_41	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-2026656_41	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-2026656_41	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2026656_41	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-2026656_43	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2026656_43	PHROG	phrog_7785	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2026656_43	UniRef90	UniRef90_UPI001D0937EE	HNH endonuclease	NA
UHGV-2026656_43	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2026656_43	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2026656_43	Structural annotation	PF01844, COG1403	NA	NA
UHGV-2026656_44	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2026656_44	UniRef90	UniRef90_R5BGH3	Conserved domain protein	NA
UHGV-2026656_44	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-2026656_45	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2026656_45	UniRef90	UniRef90_A0A847WN59	Endonuclease	NA
UHGV-2026656_45	eggNOG-mapper	1005994.GTGU_00289	NUMOD4 motif	NA
UHGV-2026656_45	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-2026656_45	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-2026656_45	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-2026656_46	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2026656_46	UniRef90	UniRef90_A0A239Z9L3	ERF superfamily	NA
UHGV-2026656_46	eggNOG-mapper	877240.E1ABY9_9CAUD	ERF superfamily	NA
UHGV-2026656_46	Pfam	PF04404	ERF superfamily	ERF
UHGV-2026656_46	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-2026656_47	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2026656_47	UniRef90	UniRef90_A0A239Z9K6	Siphovirus Gp157	NA
UHGV-2026656_47	eggNOG-mapper	1227360.C176_12583	Siphovirus Gp157	NA
UHGV-2026656_47	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-2026656_47	Structural annotation	PF05565, NF002139	NA	NA
UHGV-2026656_49	PHROG	phrog_7735	excisionase	integration and excision
UHGV-2026656_49	UniRef90	UniRef90_UPI001D08B64F	helix-turn-helix domain-containing protein	NA
UHGV-2026656_49	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2026656_49	Structural annotation	PF12728, MF_01155, NF033787, COG3311	NA	NA
UHGV-2026656_51	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2026656_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2026656_51	UniRef90	UniRef90_UPI001D06F06D	helix-turn-helix domain-containing protein	NA
UHGV-2026656_51	eggNOG-mapper	1111454.HMPREF1250_1028	carbohydrate binding	NA
UHGV-2026656_51	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2026656_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2026656_51	COG	COG2390	DNA-binding transcriptional regulator LsrR, DeoR family	NA
UHGV-2026656_51	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2026656_52	eggNOG-mapper	883156.HMPREF9282_00651	NA	NA
UHGV-2026656_52	Structural annotation	PF16747	NA	NA
UHGV-2026656_54	PHROG	phrog_20936	NA	unknown function
UHGV-2026656_54	UniRef90	UniRef90_UPI001D086FA7	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2026656_54	eggNOG-mapper	706434.HMPREF9429_00182	NA	NA
UHGV-2026656_54	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2026656_54	Structural annotation	PF06114	NA	NA
UHGV-2026656_55	KOfam	K14059	int; integrase	NA
UHGV-2026656_55	PHROG	phrog_1	integrase	integration and excision
UHGV-2026656_55	UniRef90	UniRef90_UPI001D0692F2	site-specific integrase	NA
UHGV-2026656_55	eggNOG-mapper	1232428.CAVO010000003_gene1025	Belongs to the 'phage' integrase family	NA
UHGV-2026656_55	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-2026656_55	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2026656_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2026656_55	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2026656_55	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA