UHGV-2026914

Genome information

Genome length 30,580 bps

CDS count 54

Completeness 86.67% (medium-quality)

geNomad score 0.9701

Prediction confidence Confident

Genome information
Genome ID	UHGV-2026914
vOTU ID	vOTU-017627
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029104\|Ga0169203_100209\|provirus_3_30582
BioSample	SAMEA2579937
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.67% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9701
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.44
Jumbo phage	No

Genome content
Genome length	30,580 bps
GC content	27.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	93.29%
Average CDS length	532.39 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2026914_1	PHROG	phrog_372	tail protein	tail
UHGV-2026914_2	Structural annotation	PF20747	NA	NA
UHGV-2026914_3	UniRef90	UniRef90_A0A1Q6K3Z9	Ricin B-type lectin domain-containing protein	NA
UHGV-2026914_3	Pfam	PF14200	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
UHGV-2026914_3	COG	COG1520	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	NA
UHGV-2026914_3	Structural annotation	PF00652, PF19586, PF13004, NF035930, COG4379	NA	NA
UHGV-2026914_4	UniRef90	UniRef90_UPI0013797660	phage baseplate protein	NA
UHGV-2026914_4	eggNOG-mapper	411471.SUBVAR_05861	NA	NA
UHGV-2026914_4	Pfam	PF16774	Distal tail protein, N-terminal domain	Dit_N
UHGV-2026914_4	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-2026914_5	Pfam	PF06827	Zinc finger found in FPG and IleRS	zf-FPG_IleRS
UHGV-2026914_7	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-2026914_7	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-2026914_7	UniRef90	UniRef90_UPI001EDCC813	phage tail tape measure protein	NA
UHGV-2026914_7	eggNOG-mapper	411471.SUBVAR_05860	tail tape measure protein, TP901	NA
UHGV-2026914_7	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2026914_7	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2026914_7	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2026914_9	PHROG	phrog_88	major tail protein	tail
UHGV-2026914_9	UniRef90	UniRef90_UPI00102F83A6	phage tail protein	NA
UHGV-2026914_9	eggNOG-mapper	202752.JL53_03780	phage tail protein	NA
UHGV-2026914_9	Pfam	PF06488	Phage tail tube protein	L_lac_phage_MSP
UHGV-2026914_9	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2026914_9	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-2026914_10	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-2026914_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2026914_11	UniRef90	UniRef90_A0A559U366	Bacteriophage HK97-gp10 putative tail-component	NA
UHGV-2026914_11	eggNOG-mapper	638301.HMPREF0444_1502	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2026914_11	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2026914_11	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2026914_12	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2026914_12	eggNOG-mapper	365048.Q0H236_9CAUD	NA	NA
UHGV-2026914_12	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2026914_13	PHROG	phrog_5223	neck protein	connector
UHGV-2026914_13	UniRef90	UniRef90_UPI0003FE9443	head-tail connector protein	NA
UHGV-2026914_13	eggNOG-mapper	1280689.AUJC01000011_gene1523	NA	NA
UHGV-2026914_14	PHROG	phrog_34916	tail fiber protein	tail
UHGV-2026914_14	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2026914_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-2026914_15	UniRef90	UniRef90_A0A1I6SHI5	Phage major capsid protein, HK97 family	NA
UHGV-2026914_15	eggNOG-mapper	1582155.A0A0A8WJR0_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-2026914_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2026914_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2026914_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2026914_16	KOfam	K06904	NA	NA
UHGV-2026914_16	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2026914_16	UniRef90	UniRef90_A0A7C6SI26	HK97 family phage prohead protease	NA
UHGV-2026914_16	eggNOG-mapper	1211817.CCAT010000007_gene1038	Caudovirus prohead serine protease	NA
UHGV-2026914_16	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2026914_16	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2026914_16	COG	COG3740	Phage head maturation protease	NA
UHGV-2026914_16	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2026914_17	PHROG	phrog_12	portal protein	head and packaging
UHGV-2026914_17	UniRef90	UniRef90_UPI000A35AB3D	phage portal protein	NA
UHGV-2026914_17	eggNOG-mapper	1094508.Tsac_2426	Portal protein	NA
UHGV-2026914_17	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2026914_17	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2026914_17	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2026914_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2026914_18	UniRef90	UniRef90_W9E9N7	Terminase	NA
UHGV-2026914_18	eggNOG-mapper	1094508.Tsac_2427	Phage Terminase	NA
UHGV-2026914_18	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2026914_18	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2026914_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2026914_18	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2026914_19	PHROG	phrog_1066	NA	unknown function
UHGV-2026914_19	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-2026914_19	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-2026914_21	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2026914_21	UniRef90	UniRef90_A0A1Q6K3Q9	HNH domain-containing protein	NA
UHGV-2026914_21	eggNOG-mapper	471855.Shel_08210	endonuclease activity	NA
UHGV-2026914_21	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2026914_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2026914_21	Structural annotation	NF008448	NA	NA
UHGV-2026914_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2026914_25	Structural annotation	PF15456, NF008895, COG5034	NA	NA
UHGV-2026914_26	KOfam	K07074	NA	NA
UHGV-2026914_26	PHROG	phrog_388	nucleotidyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2026914_26	UniRef90	UniRef90_A0A843FSU3	Nucleotidyltransferase domain-containing protein	NA
UHGV-2026914_26	eggNOG-mapper	1236973.JCM9157_1946	Predicted nucleotidyltransferase	NA
UHGV-2026914_26	Structural annotation	PF10127, NF000079, COG3541	NA	NA
UHGV-2026914_27	KOfam	K07099	NA	NA
UHGV-2026914_27	PHROG	phrog_547	phosphoesterase	other
UHGV-2026914_27	UniRef90	UniRef90_UPI0015F2F87C	metallophosphoesterase family protein	NA
UHGV-2026914_27	eggNOG-mapper	931276.Cspa_c39570	Ser Thr phosphatase family protein	NA
UHGV-2026914_27	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-2026914_27	COG	COG4186	NA	NA
UHGV-2026914_27	Structural annotation	PF12850, MF_00575, TIGR04123, COG4186	NA	NA
UHGV-2026914_28	PHROG	phrog_3163	NA	unknown function
UHGV-2026914_29	PHROG	phrog_918	NA	unknown function
UHGV-2026914_29	UniRef90	UniRef90_UPI000F4ECE86	NA	NA
UHGV-2026914_29	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-2026914_29	Pfam	PF19791	NA	DUF6275
UHGV-2026914_29	Structural annotation	PF19791	NA	NA
UHGV-2026914_32	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2026914_32	UniRef90	UniRef90_A0A0F9AUM7	HNHc domain-containing protein	NA
UHGV-2026914_32	eggNOG-mapper	1434319.W5RVD0_9CAUD	HNH endonuclease	NA
UHGV-2026914_32	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-2026914_32	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-2026914_32	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-2026914_32	Structural annotation	PF07453, TIGR01453	NA	NA
UHGV-2026914_34	Pfam	PF00569	Zinc finger, ZZ type	ZZ
UHGV-2026914_41	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2026914_41	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2026914_41	UniRef90	UniRef90_A0A1Q6K3G5	DNA helicase	NA
UHGV-2026914_41	eggNOG-mapper	1304880.JAGB01000002_gene2311	Participates in initiation and elongation during chromosome replication	NA
UHGV-2026914_41	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2026914_41	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2026914_41	COG	COG0305	Replicative DNA helicase	NA
UHGV-2026914_41	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2026914_42	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-2026914_42	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2026914_42	UniRef90	UniRef90_A0A1Q6K3H0	DnaB_2 domain-containing protein	NA
UHGV-2026914_42	eggNOG-mapper	936154.STP_1298	DnaD domain protein	NA
UHGV-2026914_42	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-2026914_42	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-2026914_42	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2026914_42	Structural annotation	TIGR01714	NA	NA
UHGV-2026914_44	PHROG	phrog_7566	NA	unknown function
UHGV-2026914_46	Structural annotation	PF09114, MF_00732, TIGR04176, COG1846	NA	NA
UHGV-2026914_48	Structural annotation	PF07471, NF033787	NA	NA
UHGV-2026914_49	UniRef90	UniRef90_A0A3D1PJT4	HTH cro/C1-type domain-containing protein	NA
UHGV-2026914_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2026914_49	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2026914_50	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2026914_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2026914_50	UniRef90	UniRef90_A0A3D1PLJ6	HTH cro/C1-type domain-containing protein	NA
UHGV-2026914_50	eggNOG-mapper	1391647.AVSV01000039_gene1077	Helix-turn-helix XRE-family like proteins	NA
UHGV-2026914_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2026914_50	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2026914_50	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2026914_52	UniRef90	UniRef90_R5PN39	NA	NA
UHGV-2026914_52	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2026914_53	UniRef90	UniRef90_A0A7C7D4K7	NA	NA
UHGV-2026914_53	eggNOG-mapper	1316932.MHH_c22260	NA	NA
UHGV-2026914_53	Pfam	PF12686	NA	DUF3800
UHGV-2026914_53	Structural annotation	PF01351, MF_00052_A, TIGR00729, COG1039	NA	NA
UHGV-2026914_54	KOfam	K14059	int; integrase	NA
UHGV-2026914_54	PHROG	phrog_1	integrase	integration and excision
UHGV-2026914_54	UniRef90	UniRef90_A0A1Q6LBZ5	Tyr recombinase domain-containing protein	NA
UHGV-2026914_54	eggNOG-mapper	1161902.HMPREF0378_0144	DNA integration	NA
UHGV-2026914_54	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-2026914_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2026914_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2026914_54	Structural annotation	PF00589, MF_02055, TIGR02224, COG4974	NA	NA