UHGV-2027463

Genome information

Genome length 37,882 bps

CDS count 57

Completeness 91.21% (high-quality)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-2027463
vOTU ID	vOTU-062202
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029090\|Ga0169218_100359\|provirus_5411_43292
BioSample	SAMEA2579952
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.21% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	65.84
Jumbo phage	No

Genome content
Genome length	37,882 bps
GC content	40.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	93.13%
Average CDS length	621.95 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2027463_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2027463_1	PHROG	phrog_95	integrase	integration and excision
UHGV-2027463_1	UniRef90	UniRef90_R5TPY9	Resolvase N-terminal domain protein	NA
UHGV-2027463_1	eggNOG-mapper	1235792.C808_03104	NA	NA
UHGV-2027463_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2027463_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-2027463_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2027463_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2027463_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-2027463_2	eggNOG-mapper	411470.RUMGNA_03228	NA	NA
UHGV-2027463_3	PHROG	phrog_7115	NA	unknown function
UHGV-2027463_3	UniRef90	UniRef90_A0A412C4Y3	PH domain-containing protein	NA
UHGV-2027463_3	eggNOG-mapper	476272.RUMHYD_02184	Bacterial PH domain	NA
UHGV-2027463_3	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-2027463_4	PHROG	phrog_6600	NA	unknown function
UHGV-2027463_4	UniRef90	UniRef90_A0A2N5Q2T7	HIRAN domain-containing protein	NA
UHGV-2027463_4	eggNOG-mapper	411471.SUBVAR_05817	NA	NA
UHGV-2027463_4	Pfam	PF08797	HIRAN domain	HIRAN
UHGV-2027463_5	PHROG	phrog_87	metallo-protease	other
UHGV-2027463_5	UniRef90	UniRef90_A0A414UZ15	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2027463_5	eggNOG-mapper	476272.RUMHYD_01733	IrrE N-terminal-like domain	NA
UHGV-2027463_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2027463_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2027463_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2027463_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2027463_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2027463_6	UniRef90	UniRef90_R5TY56	Toxin-antitoxin system antitoxin component Xre family	NA
UHGV-2027463_6	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-2027463_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2027463_6	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-2027463_6	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-2027463_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2027463_7	UniRef90	UniRef90_R5TR53	DNA-binding helix-turn-helix protein	NA
UHGV-2027463_7	eggNOG-mapper	476272.RUMHYD_02827	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-2027463_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2027463_7	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2027463_7	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-2027463_8	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-2027463_8	UniRef90	UniRef90_A0A414UVZ4	Aspartate ammonia-lyase	NA
UHGV-2027463_8	eggNOG-mapper	562743.JH976434_gene1050	NA	NA
UHGV-2027463_8	Structural annotation	PF11195	NA	NA
UHGV-2027463_9	eggNOG-mapper	97139.C824_05931	NA	NA
UHGV-2027463_13	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2027463_13	eggNOG-mapper	1232453.BAIF02000027_gene4199	NA	NA
UHGV-2027463_13	Structural annotation	PF01446	NA	NA
UHGV-2027463_14	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-2027463_14	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-2027463_14	UniRef90	UniRef90_A0A414UW29	RNase H type-1 domain-containing protein	NA
UHGV-2027463_14	eggNOG-mapper	1235792.C808_03083	RNase H	NA
UHGV-2027463_14	Pfam	PF00075	RNase H	RNase_H
UHGV-2027463_14	COG	COG0328	Ribonuclease HI	NA
UHGV-2027463_14	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2027463_15	UniRef90	UniRef90_UPI0008BD6C31	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-2027463_15	eggNOG-mapper	1235793.C809_01906	NA	NA
UHGV-2027463_15	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-2027463_16	PHROG	phrog_8470	NA	unknown function
UHGV-2027463_16	UniRef90	UniRef90_UPI00042669A6	PcfJ domain-containing protein	NA
UHGV-2027463_16	eggNOG-mapper	1235793.C809_02197	PcfJ-like protein	NA
UHGV-2027463_16	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2027463_16	Structural annotation	PF14284	NA	NA
UHGV-2027463_17	PHROG	phrog_15077	NA	unknown function
UHGV-2027463_17	UniRef90	UniRef90_UPI001C0F37CA	NA	NA
UHGV-2027463_17	eggNOG-mapper	742740.HMPREF9474_03494	NA	NA
UHGV-2027463_17	Structural annotation	PF11300, NF033725	NA	NA
UHGV-2027463_18	PHROG	phrog_7566	NA	unknown function
UHGV-2027463_18	eggNOG-mapper	665950.HMPREF1025_02547	NA	NA
UHGV-2027463_19	eggNOG-mapper	1232453.BAIF02000010_gene3336	NA	NA
UHGV-2027463_20	PHROG	phrog_24386	NA	unknown function
UHGV-2027463_20	eggNOG-mapper	1235799.C818_04203	COG NOG28949 non supervised orthologous group	NA
UHGV-2027463_20	COG	COG0241	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	NA
UHGV-2027463_20	Structural annotation	TIGR01689	NA	NA
UHGV-2027463_21	PHROG	phrog_26861	NA	unknown function
UHGV-2027463_21	UniRef90	UniRef90_A0A1C5X384	Single-stranded DNA-binding protein	NA
UHGV-2027463_21	eggNOG-mapper	622312.ROSEINA2194_00317	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-2027463_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2027463_21	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-2027463_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2027463_21	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-2027463_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2027463_25	UniRef90	UniRef90_A0A1C5X3K2	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-2027463_25	eggNOG-mapper	742723.HMPREF9477_00916	NA	NA
UHGV-2027463_25	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-2027463_27	eggNOG-mapper	553973.CLOHYLEM_05570	NA	NA
UHGV-2027463_29	UniRef90	UniRef90_A0A174BR74	Chemotaxis protein	NA
UHGV-2027463_29	eggNOG-mapper	658088.HMPREF0987_01711	NA	NA
UHGV-2027463_29	Structural annotation	NF008671, COG4710	NA	NA
UHGV-2027463_30	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2027463_30	UniRef90	UniRef90_UPI000E5475E9	NUMOD4 motif-containing HNH endonuclease	NA
UHGV-2027463_30	eggNOG-mapper	1423814.HMPREF0549_1779	NUMOD4 motif	NA
UHGV-2027463_30	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-2027463_30	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-2027463_30	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-2027463_30	Structural annotation	PF07463, PF13392	NA	NA
UHGV-2027463_31	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2027463_31	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2027463_31	UniRef90	UniRef90_R5TPY3	Phage related protein	NA
UHGV-2027463_31	eggNOG-mapper	1235792.C808_00081	HNH nucleases	NA
UHGV-2027463_31	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2027463_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2027463_32	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-2027463_32	UniRef90	UniRef90_UPI001A9A3020	P27 family phage terminase small subunit	NA
UHGV-2027463_32	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-2027463_32	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2027463_32	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2027463_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2027463_33	UniRef90	UniRef90_A0A2N5NUK9	Terminase	NA
UHGV-2027463_33	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-2027463_33	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2027463_33	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2027463_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2027463_33	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2027463_34	PHROG	phrog_12	portal protein	head and packaging
UHGV-2027463_34	UniRef90	UniRef90_R5TQ78	Phage portal protein HK97 family	NA
UHGV-2027463_34	eggNOG-mapper	610130.Closa_0742	Phage portal protein, HK97 family	NA
UHGV-2027463_34	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2027463_34	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2027463_34	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2027463_34	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2027463_35	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2027463_35	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2027463_35	UniRef90	UniRef90_A0A6N3GKE0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2027463_35	eggNOG-mapper	610130.Closa_0743	Clp protease	NA
UHGV-2027463_35	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2027463_35	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2027463_35	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-2027463_36	PHROG	phrog_10	major head protein	head and packaging
UHGV-2027463_36	UniRef90	UniRef90_A0A4R3JAF4	HK97 family phage major capsid protein	NA
UHGV-2027463_36	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-2027463_36	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2027463_36	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2027463_36	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2027463_36	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2027463_37	PHROG	phrog_749	NA	unknown function
UHGV-2027463_37	eggNOG-mapper	1235792.C808_00087	NA	NA
UHGV-2027463_38	PHROG	phrog_19734	NA	unknown function
UHGV-2027463_38	eggNOG-mapper	1235792.C808_00088	NA	NA
UHGV-2027463_38	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2027463_39	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2027463_39	UniRef90	UniRef90_A0A4R3JAK0	Bacteriophage HK97-gp10 putative tail-component	NA
UHGV-2027463_39	eggNOG-mapper	411473.RUMCAL_01154	NA	NA
UHGV-2027463_39	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2027463_39	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2027463_40	PHROG	phrog_78	tail terminator	connector
UHGV-2027463_40	eggNOG-mapper	483218.BACPEC_01313	NA	NA
UHGV-2027463_40	Structural annotation	PF20765	NA	NA
UHGV-2027463_41	PHROG	phrog_88	major tail protein	tail
UHGV-2027463_41	UniRef90	UniRef90_A0A2N5NUL1	Phage tail protein	NA
UHGV-2027463_41	eggNOG-mapper	610130.Closa_0749	phage major tail protein, phi13 family	NA
UHGV-2027463_41	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2027463_42	PHROG	phrog_709	NA	unknown function
UHGV-2027463_42	eggNOG-mapper	879305.HMPREF9290_0132	NA	NA
UHGV-2027463_42	Structural annotation	PF11836	NA	NA
UHGV-2027463_43	PHROG	phrog_3033	NA	unknown function
UHGV-2027463_43	UniRef90	UniRef90_A0A2X2UJ60	Phage-like protein	NA
UHGV-2027463_43	eggNOG-mapper	1341157.RF007C_02605	NA	NA
UHGV-2027463_44	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-2027463_44	UniRef90	UniRef90_R5TQ69	PhageMin_Tail domain-containing protein	NA
UHGV-2027463_44	eggNOG-mapper	903814.ELI_1307	Phage-related minor tail protein	NA
UHGV-2027463_44	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2027463_44	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2027463_44	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-2027463_44	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-2027463_45	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2027463_45	UniRef90	UniRef90_UPI000E2F9A85	phage tail family protein	NA
UHGV-2027463_45	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-2027463_45	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2027463_45	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2027463_45	COG	COG4722	Phage-related protein YomH	NA
UHGV-2027463_45	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2027463_46	PHROG	phrog_13289	tail protein	tail
UHGV-2027463_46	UniRef90	UniRef90_A0A412C574	Prophage_tail domain-containing protein	NA
UHGV-2027463_46	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-2027463_46	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2027463_46	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2027463_46	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-2027463_46	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2027463_47	PHROG	phrog_14030	NA	unknown function
UHGV-2027463_47	UniRef90	UniRef90_A0A6N3GLP8	Phage_lysozyme2 domain-containing protein	NA
UHGV-2027463_47	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-2027463_47	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-2027463_47	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2027463_47	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-2027463_48	PHROG	phrog_21765	NA	unknown function
UHGV-2027463_48	UniRef90	UniRef90_UPI000E4B80F2	collagen-like protein	NA
UHGV-2027463_48	eggNOG-mapper	566552.BIFCAT_00854	outer membrane autotransporter barrel domain protein	NA
UHGV-2027463_48	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-2027463_49	PHROG	phrog_16164	NA	unknown function
UHGV-2027463_49	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-2027463_49	Structural annotation	PF10651, TIGR02657	NA	NA
UHGV-2027463_50	eggNOG-mapper	742733.HMPREF9469_00973	NA	NA
UHGV-2027463_50	Structural annotation	PF09136	NA	NA
UHGV-2027463_52	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-2027463_52	PHROG	phrog_819	tail protein	tail
UHGV-2027463_52	UniRef90	UniRef90_R5UG71	Collagen triple helix repeat protein	NA
UHGV-2027463_52	eggNOG-mapper	428127.EUBDOL_01210	self proteolysis	NA
UHGV-2027463_52	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2027463_52	COG	COG3209	NA	NA
UHGV-2027463_53	Structural annotation	PF08931	NA	NA
UHGV-2027463_54	PHROG	phrog_199	holin	lysis
UHGV-2027463_54	UniRef90	UniRef90_A0A6N3GN23	Holin family protein	NA
UHGV-2027463_54	eggNOG-mapper	476272.RUMHYD_02872	NA	NA
UHGV-2027463_54	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2027463_54	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2027463_54	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2027463_55	PHROG	phrog_14030	NA	unknown function
UHGV-2027463_55	UniRef90	UniRef90_A0A6N3GME3	Ricin-type beta-trefoil lectin domain protein	NA
UHGV-2027463_55	eggNOG-mapper	218140.BPSY_0951	NLP P60 protein	NA
UHGV-2027463_55	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-2027463_55	Pfam	PF14200	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
UHGV-2027463_55	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2027463_57	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2027463_57	PHROG	phrog_833	endolysin	lysis
UHGV-2027463_57	UniRef90	UniRef90_A0A829NR25	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-2027463_57	eggNOG-mapper	411470.RUMGNA_03787	COG NOG33632 non supervised orthologous group	NA
UHGV-2027463_57	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2027463_57	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-2027463_57	Structural annotation	PF01510, COG5632	NA	NA