UHGV-2027671

Genome information

Genome length 35,576 bps

CDS count 62

Completeness 97.76% (high-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-2027671
vOTU ID	vOTU-072223
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029121\|Ga0168811_100043\|provirus_43984_79559
BioSample	SAMEA2737792
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.76% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	65.77
Jumbo phage	No

Genome content
Genome length	35,576 bps
GC content	46.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	91.03%
Average CDS length	528.15 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2027671_1	PHROG	phrog_18996	NA	unknown function
UHGV-2027671_1	eggNOG-mapper	864563.HMPREF9166_1229	NA	NA
UHGV-2027671_2	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2027671_2	PHROG	phrog_435	endolysin	lysis
UHGV-2027671_2	UniRef90	UniRef90_G0VPG3	N-acetylmuramoyl-L-alanine amidase CwlB	NA
UHGV-2027671_2	eggNOG-mapper	1064535.MELS_1119	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2027671_2	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2027671_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2027671_2	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-2027671_3	eggNOG-mapper	1273103.NM10_01736	NA	NA
UHGV-2027671_4	PHROG	phrog_1863	NA	unknown function
UHGV-2027671_7	KOfam	K14059	int; integrase	NA
UHGV-2027671_7	PHROG	phrog_1	integrase	integration and excision
UHGV-2027671_7	UniRef90	UniRef90_S7J9K9	Site-specific tyrosine recombinase XerC	NA
UHGV-2027671_7	eggNOG-mapper	1273103.NM10_01678	Phage integrase family	NA
UHGV-2027671_7	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2027671_7	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2027671_7	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2027671_9	PHROG	phrog_2557	virion structural protein	head and packaging
UHGV-2027671_9	eggNOG-mapper	1111454.HMPREF1250_0201	tail collar domain protein	NA
UHGV-2027671_9	COG	COG4675	Phage tail collar domain	NA
UHGV-2027671_9	Structural annotation	PF09458, NF012201	NA	NA
UHGV-2027671_10	PHROG	phrog_521	tail protein	tail
UHGV-2027671_10	UniRef90	UniRef90_I0GWS5	Phage related protein	NA
UHGV-2027671_10	eggNOG-mapper	1111454.HMPREF1250_0200	NA	NA
UHGV-2027671_10	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-2027671_10	COG	COG3778	NA	NA
UHGV-2027671_10	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-2027671_11	PHROG	phrog_6	baseplate protein	tail
UHGV-2027671_11	UniRef90	UniRef90_A0A2S0M4L2	Baseplate_J domain-containing protein	NA
UHGV-2027671_11	eggNOG-mapper	1273103.NM10_00999	Baseplate J-like protein	NA
UHGV-2027671_11	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-2027671_11	COG	COG3299	NA	NA
UHGV-2027671_11	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-2027671_12	PHROG	phrog_120	baseplate protein	tail
UHGV-2027671_12	UniRef90	UniRef90_A0A2S0M4I9	NA	NA
UHGV-2027671_12	eggNOG-mapper	1232428.CAVO010000003_gene997	NA	NA
UHGV-2027671_12	Pfam	PF10934	NA	DUF2634
UHGV-2027671_12	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-2027671_12	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-2027671_13	PHROG	phrog_579	NA	unknown function
UHGV-2027671_13	UniRef90	UniRef90_A0A2S0M4I6	NA	NA
UHGV-2027671_13	eggNOG-mapper	1123250.KB908414_gene2116	NA	NA
UHGV-2027671_13	Pfam	PF10844	NA	DUF2577
UHGV-2027671_13	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-2027671_14	PHROG	phrog_400	tail protein	tail
UHGV-2027671_14	UniRef90	UniRef90_A0A848BXY8	Lytic transglycosylase domain-containing protein	NA
UHGV-2027671_14	eggNOG-mapper	1232428.CAVO010000003_gene999	NLP P60 protein	NA
UHGV-2027671_14	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-2027671_14	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2027671_15	PHROG	phrog_5184	NA	unknown function
UHGV-2027671_15	UniRef90	UniRef90_UPI001F405395	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-2027671_15	eggNOG-mapper	1232428.CAVO010000003_gene1000	LysM domain	NA
UHGV-2027671_15	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-2027671_15	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-2027671_16	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-2027671_16	UniRef90	UniRef90_UPI001645A310	phage tail tape measure protein	NA
UHGV-2027671_16	eggNOG-mapper	1232428.CAVO010000003_gene1001	Phage-related minor tail protein	NA
UHGV-2027671_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2027671_16	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2027671_16	COG	COG5283	Phage-related tail protein	NA
UHGV-2027671_16	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2027671_17	PHROG	phrog_2722	NA	unknown function
UHGV-2027671_18	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-2027671_18	UniRef90	UniRef90_UPI001645A435	XkdN-like protein	NA
UHGV-2027671_18	eggNOG-mapper	1232428.CAVO010000003_gene1002	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-2027671_18	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-2027671_18	Structural annotation	PF08890	NA	NA
UHGV-2027671_19	PHROG	phrog_365	tail protein	tail
UHGV-2027671_19	UniRef90	UniRef90_A0A2S0M4K4	Phage portal protein	NA
UHGV-2027671_19	eggNOG-mapper	1232428.CAVO010000003_gene1003	Phage tail tube protein	NA
UHGV-2027671_19	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-2027671_19	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-2027671_20	PHROG	phrog_1480	tail sheath	tail
UHGV-2027671_20	UniRef90	UniRef90_UPI0016491346	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-2027671_20	eggNOG-mapper	1232428.CAVO010000003_gene1004	Phage tail sheath C-terminal domain	NA
UHGV-2027671_20	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-2027671_20	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-2027671_20	Structural annotation	PF10758, COG3497	NA	NA
UHGV-2027671_21	PHROG	phrog_525	NA	unknown function
UHGV-2027671_21	eggNOG-mapper	1408324.JNJK01000006_gene1386	NA	NA
UHGV-2027671_21	Pfam	PF20765	NA	DUF6838
UHGV-2027671_22	UniRef90	UniRef90_UPI001645C731	HK97 gp10 family phage protein	NA
UHGV-2027671_22	eggNOG-mapper	1232428.CAVO010000003_gene1006	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2027671_22	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2027671_22	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-2027671_23	PHROG	phrog_25	head closure Hc1	connector
UHGV-2027671_23	UniRef90	UniRef90_UPI001648A1FB	phage head closure protein	NA
UHGV-2027671_23	eggNOG-mapper	1232428.CAVO010000003_gene1007	Phage head-tail joining protein	NA
UHGV-2027671_23	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2027671_23	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2027671_23	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2027671_23	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2027671_24	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2027671_24	UniRef90	UniRef90_UPI001647B235	head-tail connector protein	NA
UHGV-2027671_24	eggNOG-mapper	861450.HMPREF0080_02048	Phage gp6-like head-tail connector protein	NA
UHGV-2027671_24	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2027671_24	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2027671_24	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2027671_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-2027671_25	UniRef90	UniRef90_UPI000E53779F	phage major capsid protein	NA
UHGV-2027671_25	eggNOG-mapper	1341151.ASZU01000004_gene260	Phage capsid family	NA
UHGV-2027671_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2027671_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2027671_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2027671_25	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2027671_26	KOfam	K06904	NA	NA
UHGV-2027671_26	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2027671_26	UniRef90	UniRef90_A0A412CHQ0	HK97 family phage prohead protease	NA
UHGV-2027671_26	eggNOG-mapper	1235755.ANAM01000006_gene2374	Caudovirus prohead serine protease	NA
UHGV-2027671_26	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2027671_26	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2027671_26	COG	COG3740	Phage head maturation protease	NA
UHGV-2027671_26	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2027671_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-2027671_27	UniRef90	UniRef90_UPI0016454394	phage portal protein	NA
UHGV-2027671_27	eggNOG-mapper	1232428.CAVO010000003_gene1011	Phage portal protein	NA
UHGV-2027671_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2027671_27	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2027671_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2027671_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2027671_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2027671_28	UniRef90	UniRef90_UPI00164586AB	terminase large subunit	NA
UHGV-2027671_28	eggNOG-mapper	1232428.CAVO010000003_gene1012	Phage Terminase	NA
UHGV-2027671_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2027671_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2027671_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2027671_28	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2027671_29	PHROG	phrog_1066	NA	unknown function
UHGV-2027671_29	eggNOG-mapper	1232428.CAVO010000003_gene1013	NA	NA
UHGV-2027671_29	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-2027671_30	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2027671_30	UniRef90	UniRef90_A0A8D4UTL0	HNHc domain-containing protein	NA
UHGV-2027671_30	eggNOG-mapper	1094508.Tsac_2429	HNH nucleases	NA
UHGV-2027671_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2027671_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2027671_30	Structural annotation	NF008448	NA	NA
UHGV-2027671_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2027671_32	UniRef90	UniRef90_A0A6N2ZMD2	Sigma-70, region 4	NA
UHGV-2027671_32	eggNOG-mapper	1265507.KB899636_gene1634	NA	NA
UHGV-2027671_32	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-2027671_33	PHROG	phrog_37395	NA	unknown function
UHGV-2027671_34	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2027671_34	UniRef90	UniRef90_UPI001E47E116	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2027671_34	eggNOG-mapper	697281.Mahau_0558	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-2027671_34	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2027671_35	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2027671_35	eggNOG-mapper	1151292.QEW_0318	NA	NA
UHGV-2027671_35	Structural annotation	PF21578, NF033538	NA	NA
UHGV-2027671_36	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2027671_36	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2027671_36	UniRef90	UniRef90_UPI0013B408A0	single-stranded DNA-binding protein	NA
UHGV-2027671_36	eggNOG-mapper	1232410.KI421428_gene1074	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-2027671_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2027671_36	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2027671_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2027671_36	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2027671_36	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-2027671_40	PHROG	phrog_236	nucleotide kinase	other
UHGV-2027671_40	UniRef90	UniRef90_UPI001F0F7AF9	NA	NA
UHGV-2027671_40	eggNOG-mapper	706434.HMPREF9429_00388	NA	NA
UHGV-2027671_40	Pfam	PF11753	NA	DUF3310
UHGV-2027671_40	Structural annotation	PF11753	NA	NA
UHGV-2027671_43	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2027671_43	UniRef90	UniRef90_UPI0018C7AF31	NA	NA
UHGV-2027671_43	eggNOG-mapper	706434.HMPREF9429_00177	NA	NA
UHGV-2027671_43	Structural annotation	COG2250	NA	NA
UHGV-2027671_46	PHROG	phrog_9403	NA	unknown function
UHGV-2027671_47	PHROG	phrog_3777	NA	unknown function
UHGV-2027671_47	UniRef90	UniRef90_UPI00195D4819	NA	NA
UHGV-2027671_47	eggNOG-mapper	1504823.CCMM01000006_gene385	Antirestriction protein (ArdA)	NA
UHGV-2027671_47	Pfam	PF12957	NA	DUF3846
UHGV-2027671_47	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-2027671_56	PHROG	phrog_2211	NA	unknown function
UHGV-2027671_56	UniRef90	UniRef90_A0A0A8WJ72	Putative phage protein	NA
UHGV-2027671_56	eggNOG-mapper	935948.KE386495_gene1208	NA	NA
UHGV-2027671_58	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-2027671_58	UniRef90	UniRef90_W1V8T2	NA	NA
UHGV-2027671_58	eggNOG-mapper	1347392.CCEZ01000005_gene1206	NA	NA
UHGV-2027671_58	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2027671_58	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-2027671_59	UniRef90	UniRef90_UPI00068C50D9	transcriptional regulator	NA
UHGV-2027671_59	eggNOG-mapper	936589.HMPREF1521_1175	sequence-specific DNA binding	NA
UHGV-2027671_59	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2027671_59	Structural annotation	PF13443, MF_00535, NF041951, COG1396	NA	NA
UHGV-2027671_60	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-2027671_60	UniRef90	UniRef90_A0A0R1RLY2	DNA polymerase III, epsilon subunit related 3-5 exonuclease	NA
UHGV-2027671_60	eggNOG-mapper	1236973.JCM9157_3114	3' exoribonuclease, RNase T-like	NA
UHGV-2027671_60	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-2027671_60	Pfam	PF00929	Exonuclease	RNase_T
UHGV-2027671_60	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-2027671_60	Structural annotation	PF00929, MF_00157, NF004844, COG0847	NA	NA
UHGV-2027671_62	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2027671_62	PHROG	phrog_95	integrase	integration and excision
UHGV-2027671_62	UniRef90	UniRef90_UPI001D05C6CD	recombinase family protein	NA
UHGV-2027671_62	eggNOG-mapper	706434.HMPREF9429_00560	overlaps another CDS with the same product name	NA
UHGV-2027671_62	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2027671_62	Pfam	PF07508	Recombinase	Recombinase
UHGV-2027671_62	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2027671_62	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2027671_62	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA