UHGV-2027782

Genome information

Genome length 39,798 bps

CDS count 73

Completeness 94.22% (high-quality)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-2027782
vOTU ID	vOTU-070329
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029119\|Ga0168816_100592
BioSample	SAMEA2737797
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.22% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.94
Jumbo phage	No

Genome content
Genome length	39,798 bps
GC content	53.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	91.81%
Average CDS length	503.92 bps
tRNA count	5
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2027782_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2027782_2	PHROG	phrog_10250	NA	unknown function
UHGV-2027782_2	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-2027782_2	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-2027782_2	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2027782_2	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-2027782_2	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2027782_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-2027782_2	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2027782_3	PHROG	phrog_64	portal protein	head and packaging
UHGV-2027782_3	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-2027782_3	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2027782_3	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2027782_3	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2027782_5	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-2027782_5	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-2027782_5	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-2027782_5	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2027782_5	COG	COG2369	NA	NA
UHGV-2027782_5	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-2027782_8	PHROG	phrog_8680	NA	unknown function
UHGV-2027782_8	UniRef90	UniRef90_A0A844D688	NA	NA
UHGV-2027782_8	eggNOG-mapper	1423790.BN53_04265	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-2027782_8	Pfam	PF14386	NA	DUF4417
UHGV-2027782_8	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2027782_8	Structural annotation	PF14386	NA	NA
UHGV-2027782_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2027782_10	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-2027782_10	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2027782_10	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2027782_10	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2027782_10	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2027782_12	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-2027782_12	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-2027782_12	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-2027782_13	Structural annotation	PF06810	NA	NA
UHGV-2027782_14	PHROG	phrog_544	major head protein	head and packaging
UHGV-2027782_14	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-2027782_14	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-2027782_14	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2027782_16	PHROG	phrog_17977	NA	unknown function
UHGV-2027782_16	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-2027782_16	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2027782_17	Structural annotation	PF13554	NA	NA
UHGV-2027782_18	PHROG	phrog_885	major tail protein	tail
UHGV-2027782_18	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-2027782_18	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-2027782_21	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-2027782_21	UniRef90	UniRef90_A0A6N7TLD3	Tape measure protein	NA
UHGV-2027782_21	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-2027782_21	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2027782_21	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2027782_21	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2027782_21	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2027782_22	UniRef90	UniRef90_A0A415UCK7	MtfA protein	NA
UHGV-2027782_22	eggNOG-mapper	1111121.HMPREF1247_1241	NA	NA
UHGV-2027782_22	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-2027782_23	PHROG	phrog_3558	tail protein	tail
UHGV-2027782_23	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-2027782_23	eggNOG-mapper	411460.RUMTOR_00484	Prophage endopeptidase tail	NA
UHGV-2027782_23	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2027782_23	COG	COG4926	Phage-related protein	NA
UHGV-2027782_23	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2027782_25	KOfam	K07273	acm; lysozyme	NA
UHGV-2027782_25	PHROG	phrog_291	endolysin	lysis
UHGV-2027782_25	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-2027782_25	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-2027782_25	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2027782_25	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2027782_25	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-2027782_26	PHROG	phrog_1863	NA	unknown function
UHGV-2027782_26	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-2027782_27	PHROG	phrog_15303	NA	unknown function
UHGV-2027782_30	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-2027782_30	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-2027782_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2027782_30	COG	COG1309	DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA	NA
UHGV-2027782_30	Structural annotation	PF01381, TIGR03070, COG1396	NA	NA
UHGV-2027782_32	PHROG	phrog_3754	NA	unknown function
UHGV-2027782_32	eggNOG-mapper	1485543.JMME01000025_gene2462	NA	NA
UHGV-2027782_33	PHROG	phrog_21718	NA	unknown function
UHGV-2027782_33	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-2027782_34	PHROG	phrog_22984	NA	unknown function
UHGV-2027782_36	PHROG	phrog_16490	NA	unknown function
UHGV-2027782_36	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-2027782_37	PHROG	phrog_20016	NA	unknown function
UHGV-2027782_37	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-2027782_38	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-2027782_38	Structural annotation	PF12510	NA	NA
UHGV-2027782_40	KOfam	K14059	int; integrase	NA
UHGV-2027782_40	PHROG	phrog_1	integrase	integration and excision
UHGV-2027782_40	UniRef90	UniRef90_A0A6N7TNQ4	Tyrosine-type recombinase/integrase	NA
UHGV-2027782_40	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-2027782_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2027782_40	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2027782_40	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2027782_41	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-2027782_41	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2027782_41	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-2027782_44	eggNOG-mapper	321955.AAGP01000017_gene2211	NA	NA
UHGV-2027782_44	Structural annotation	PF16900, NF040991	NA	NA
UHGV-2027782_47	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2027782_47	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2027782_47	UniRef90	UniRef90_A0A844DFR0	Helix-turn-helix domain-containing protein	NA
UHGV-2027782_47	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-2027782_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2027782_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2027782_47	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2027782_49	Structural annotation	PF16857, NF001981	NA	NA
UHGV-2027782_52	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2027782_52	PHROG	phrog_5817	anti-repressor Ant	transcription regulation
UHGV-2027782_52	UniRef90	UniRef90_A0A6N7TLD1	Phage antirepressor Ant	NA
UHGV-2027782_52	eggNOG-mapper	445971.ANASTE_00706	AntA/AntB antirepressor	NA
UHGV-2027782_52	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-2027782_52	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2027782_52	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-2027782_52	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-2027782_55	PHROG	phrog_4433	NA	unknown function
UHGV-2027782_55	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-2027782_55	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-2027782_56	Structural annotation	PF10743, NF033787	NA	NA
UHGV-2027782_60	Structural annotation	PF06718	NA	NA
UHGV-2027782_62	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2027782_62	UniRef90	UniRef90_UPI0011C8A287	recombinase RecT	NA
UHGV-2027782_62	eggNOG-mapper	33035.JPJF01000071_gene4462	NA	NA
UHGV-2027782_63	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2027782_63	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2027782_63	UniRef90	UniRef90_D4K451	Single-stranded DNA-binding protein	NA
UHGV-2027782_63	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-2027782_63	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2027782_63	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2027782_63	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2027782_63	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2027782_63	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-2027782_64	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-2027782_64	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2027782_64	UniRef90	UniRef90_A0A6N7TLH4	DnaD domain protein	NA
UHGV-2027782_64	eggNOG-mapper	877411.JMMA01000002_gene2292	NA	NA
UHGV-2027782_64	Pfam	PF19808	NA	DUF6291
UHGV-2027782_64	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-2027782_64	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-2027782_64	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-2027782_65	Structural annotation	PF11417	NA	NA
UHGV-2027782_66	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-2027782_68	PHROG	phrog_3136	NA	unknown function
UHGV-2027782_68	UniRef90	UniRef90_A0A6N7TMC2	ASCH domain-containing protein	NA
UHGV-2027782_68	eggNOG-mapper	1235793.C809_02645	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-2027782_68	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-2027782_68	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-2027782_69	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2027782_69	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2027782_69	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2027782_69	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-2027782_69	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2027782_69	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2027782_69	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2027782_70	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-2027782_70	PHROG	phrog_359	DNA methyltransferase	other
UHGV-2027782_70	UniRef90	UniRef90_A0A329TJ90	DNA methyltransferase	NA
UHGV-2027782_70	eggNOG-mapper	1235798.C817_04106	Belongs to the MT-A70-like family	NA
UHGV-2027782_70	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-2027782_70	Pfam	PF05063	MT-A70	MT-A70
UHGV-2027782_70	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-2027782_70	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-2027782_71	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2027782_71	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-2027782_73	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-2027782_73	UniRef90	UniRef90_UPI001C02EFD1	DNA-packaging protein	NA
UHGV-2027782_73	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-2027782_73	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-2027782_73	Structural annotation	PF16677	NA	NA