UHGV-2027883

Genome information

Genome length 29,438 bps

CDS count 35

Completeness 62.12% (medium-quality)

geNomad score 0.9511

Prediction confidence Confident

Genome information
Genome ID	UHGV-2027883
vOTU ID	vOTU-028008
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029136\|Ga0168747_100771\|provirus_121_29558
BioSample	SAMEA2737728
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.12% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9511
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.38
Jumbo phage	No

Genome content
Genome length	29,438 bps
GC content	40.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	93.20%
Average CDS length	788.14 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2027883_1	PHROG	phrog_36734	NA	unknown function
UHGV-2027883_1	UniRef90	UniRef90_A0A1B3IRL4	NimC/NimA family protein	NA
UHGV-2027883_1	eggNOG-mapper	1449050.JNLE01000003_gene2486	Pyridoxamine 5'-phosphate	NA
UHGV-2027883_1	Pfam	PF01243	Pyridoxamine 5'-phosphate oxidase	Putative_PNPOx
UHGV-2027883_1	COG	COG5015	Pyridoxamine 5'-phosphate oxidase (PNPOx-like) family protein	NA
UHGV-2027883_2	UniRef90	UniRef90_A0A413RVK3	Transposase (Fragment)	NA
UHGV-2027883_2	eggNOG-mapper	1280692.AUJL01000005_gene1783	Helix-turn-helix domain	NA
UHGV-2027883_2	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-2027883_3	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2027883_3	PHROG	phrog_498	DNA methyltransferase	other
UHGV-2027883_3	UniRef90	UniRef90_A0A1M6IQU9	Methyltransferase	NA
UHGV-2027883_3	eggNOG-mapper	879308.HMPREF9130_0842	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-2027883_3	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2027883_3	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2027883_3	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2027883_3	COG	COG0863	DNA modification methylase	NA
UHGV-2027883_3	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-2027883_4	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2027883_4	UniRef90	UniRef90_A0A1M6IQQ7	HNH endonuclease	NA
UHGV-2027883_4	eggNOG-mapper	411473.RUMCAL_00463	HNH endonuclease	NA
UHGV-2027883_4	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-2027883_5	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2027883_5	PHROG	phrog_38038	NA	unknown function
UHGV-2027883_5	UniRef90	UniRef90_A0A4R7LBD6	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2027883_5	eggNOG-mapper	755731.Clo1100_3595	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-2027883_5	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-2027883_5	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2027883_5	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2027883_5	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2027883_5	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-2027883_6	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-2027883_6	UniRef90	UniRef90_W8TI52	Virulence-like protein	NA
UHGV-2027883_6	eggNOG-mapper	1286171.EAL2_c05800	NA	NA
UHGV-2027883_6	AcrCatalog	cluster_14489	NA	NA
UHGV-2027883_7	PHROG	phrog_3782	NA	unknown function
UHGV-2027883_7	UniRef90	UniRef90_A0A898FLG2	NA	NA
UHGV-2027883_7	eggNOG-mapper	1111454.HMPREF1250_1744	NA	NA
UHGV-2027883_7	Pfam	PF14192	NA	DUF4314
UHGV-2027883_7	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-2027883_7	Structural annotation	PF14192, MF_00754, NF003018	NA	NA
UHGV-2027883_8	PHROG	phrog_8677	NA	unknown function
UHGV-2027883_8	UniRef90	UniRef90_UPI001C9D43D0	NA	NA
UHGV-2027883_8	eggNOG-mapper	1408437.JNJN01000033_gene2214	NA	NA
UHGV-2027883_8	Pfam	PF16468	NA	DUF5049
UHGV-2027883_8	Structural annotation	PF16468	NA	NA
UHGV-2027883_9	PHROG	phrog_4709	NA	unknown function
UHGV-2027883_9	eggNOG-mapper	1120978.KB894083_gene910	NA	NA
UHGV-2027883_9	AcrCatalog	cluster_3300	NA	NA
UHGV-2027883_10	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2027883_10	UniRef90	UniRef90_A0A2S6FV15	Phage terminase large subunit-like protein	NA
UHGV-2027883_10	eggNOG-mapper	1487921.DP68_11310	Terminase	NA
UHGV-2027883_10	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2027883_10	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2027883_10	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2027883_10	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2027883_11	PHROG	phrog_12	portal protein	head and packaging
UHGV-2027883_11	UniRef90	UniRef90_UPI0005598979	phage portal protein	NA
UHGV-2027883_11	eggNOG-mapper	1408437.JNJN01000033_gene2218	Phage portal protein	NA
UHGV-2027883_11	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2027883_11	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2027883_11	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2027883_11	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2027883_12	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2027883_12	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2027883_12	UniRef90	UniRef90_A0A644UBU5	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2027883_12	eggNOG-mapper	1123263.AUKY01000027_gene846	Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins	NA
UHGV-2027883_12	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2027883_12	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2027883_12	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-2027883_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-2027883_13	UniRef90	UniRef90_A0A415H804	Phage major capsid protein	NA
UHGV-2027883_13	eggNOG-mapper	908340.HMPREF9406_0168	Phage major capsid protein, HK97 family	NA
UHGV-2027883_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2027883_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2027883_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2027883_13	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2027883_14	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2027883_14	UniRef90	UniRef90_A0A143XCH0	Phage gp6-like head-tail connector protein	NA
UHGV-2027883_14	eggNOG-mapper	411468.CLOSCI_00202	Phage gp6-like head-tail connector protein	NA
UHGV-2027883_14	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2027883_14	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2027883_14	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2027883_15	PHROG	phrog_25	head closure Hc1	connector
UHGV-2027883_15	UniRef90	UniRef90_A0A1H2ZKH2	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-2027883_15	eggNOG-mapper	568816.Acin_1914	Phage head-tail joining protein	NA
UHGV-2027883_15	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2027883_15	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2027883_15	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2027883_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2027883_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2027883_16	UniRef90	UniRef90_A0A1H2ZKK2	Phage protein, HK97 gp10 family	NA
UHGV-2027883_16	eggNOG-mapper	568816.Acin_1913	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2027883_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2027883_16	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2027883_16	COG	COG5005	NA	NA
UHGV-2027883_16	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2027883_17	PHROG	phrog_176	tail terminator	connector
UHGV-2027883_17	UniRef90	UniRef90_UPI000E4BB0CC	NA	NA
UHGV-2027883_17	eggNOG-mapper	2754.EH55_13215	NA	NA
UHGV-2027883_17	Pfam	PF11367	NA	DUF3168
UHGV-2027883_17	Structural annotation	PF16807, COG5003	NA	NA
UHGV-2027883_18	PHROG	phrog_1407	major tail protein	tail
UHGV-2027883_18	UniRef90	UniRef90_R6X5G0	Phage major tail protein TP901-1 family	NA
UHGV-2027883_18	eggNOG-mapper	568816.Acin_1911	Phage tail tube protein	NA
UHGV-2027883_18	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-2027883_18	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-2027883_18	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-2027883_18	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2027883_19	eggNOG-mapper	568816.Acin_1910	NA	NA
UHGV-2027883_19	Structural annotation	PF19591	NA	NA
UHGV-2027883_20	PHROG	phrog_12798	NA	unknown function
UHGV-2027883_20	UniRef90	UniRef90_UPI000E46A55D	tape measure protein	NA
UHGV-2027883_20	eggNOG-mapper	568816.Acin_1908	tape measure	NA
UHGV-2027883_20	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2027883_20	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2027883_20	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-2027883_20	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2027883_21	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2027883_21	UniRef90	UniRef90_UPI000E4A4EA0	phage tail family protein	NA
UHGV-2027883_21	eggNOG-mapper	568816.Acin_1906	Phage tail protein	NA
UHGV-2027883_21	Structural annotation	PF20753, PF19512, TIGR01633, COG4722	NA	NA
UHGV-2027883_22	eggNOG-mapper	568816.Acin_1905	NA	NA
UHGV-2027883_22	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-2027883_23	PHROG	phrog_13336	NA	unknown function
UHGV-2027883_23	eggNOG-mapper	2754.EH55_13265	NA	NA
UHGV-2027883_24	Structural annotation	PF14301	NA	NA
UHGV-2027883_25	PHROG	phrog_4105	NA	unknown function
UHGV-2027883_25	eggNOG-mapper	1291050.JAGE01000001_gene433	NA	NA
UHGV-2027883_26	eggNOG-mapper	936573.HMPREF1147_1352	NA	NA
UHGV-2027883_27	PHROG	phrog_5867	endolysin	lysis
UHGV-2027883_27	UniRef90	UniRef90_A0A644UC75	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-2027883_27	eggNOG-mapper	1262914.BN533_01630	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2027883_27	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2027883_27	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-2027883_27	Structural annotation	MF_04111	NA	NA
UHGV-2027883_28	eggNOG-mapper	591001.Acfer_1124	NA	NA
UHGV-2027883_29	KOfam	K09768	NA	NA
UHGV-2027883_29	UniRef90	UniRef90_R6I877	UPF0178 protein BN517_01637	NA
UHGV-2027883_29	eggNOG-mapper	1121344.JHZO01000003_gene1086	Belongs to the UPF0178 family	NA
UHGV-2027883_29	Pfam	PF02639	NA	DUF188
UHGV-2027883_29	NCBIFam	NF001095.0	YaiI/YqxD family protein	NA
UHGV-2027883_29	COG	COG1671	NA	NA
UHGV-2027883_31	PHROG	phrog_2996	NA	unknown function
UHGV-2027883_31	eggNOG-mapper	1487921.DP68_11400	NA	NA
UHGV-2027883_31	Pfam	PF20612	SHOCT domain	SHOCT_2
UHGV-2027883_31	Structural annotation	PF20612	NA	NA
UHGV-2027883_32	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2027883_32	PHROG	phrog_95	integrase	integration and excision
UHGV-2027883_32	UniRef90	UniRef90_A0A1C7G1I0	Recombinase family protein	NA
UHGV-2027883_32	eggNOG-mapper	411468.CLOSCI_00183	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-2027883_32	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2027883_32	Pfam	PF07508	Recombinase	Recombinase
UHGV-2027883_32	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2027883_32	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2027883_32	Structural annotation	PF00239, PF07508, PF18822, NF041201, COG1961	NA	NA
UHGV-2027883_33	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2027883_33	PHROG	phrog_7701	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-2027883_33	UniRef90	UniRef90_A0A1I6LVI5	Recombinase domain-containing protein	NA
UHGV-2027883_33	eggNOG-mapper	1235799.C818_01000	Recombinase	NA
UHGV-2027883_33	Pfam	PF07508	Recombinase	Recombinase
UHGV-2027883_33	Structural annotation	PF07508	NA	NA
UHGV-2027883_34	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2027883_34	PHROG	phrog_95	integrase	integration and excision
UHGV-2027883_34	UniRef90	UniRef90_UPI000252F336	recombinase family protein	NA
UHGV-2027883_34	eggNOG-mapper	649747.HMPREF0083_00639	Resolvase, N terminal domain	NA
UHGV-2027883_34	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2027883_34	Pfam	PF07508	Recombinase	Recombinase
UHGV-2027883_34	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2027883_34	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2027883_34	Structural annotation	PF00239, PF07508, PF18822, NF041201, COG1961	NA	NA
UHGV-2027883_35	KOfam	K19350	lsa; lincosamide and streptogramin A transport system ATP-binding/permease protein	NA
UHGV-2027883_35	PHROG	phrog_293	ABC transporter	moron, auxiliary metabolic gene and host takeover
UHGV-2027883_35	UniRef90	UniRef90_A0A182B7C7	Lsa family ABC-F type ribosomal protection protein	NA
UHGV-2027883_35	eggNOG-mapper	1120978.KB894081_gene80	ATPases associated with a variety of cellular activities	NA
UHGV-2027883_35	Pfam	PF13304	AAA domain, putative AbiEii toxin, Type IV TA system	AAA_21
UHGV-2027883_35	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-2027883_35	NCBIFam	NF000167.1	Lsa family ABC-F type ribosomal protection protein	NA
UHGV-2027883_35	COG	COG0488	ATPase components of ABC transporters with duplicated ATPase domains	NA