UHGV-2027901

Genome information

Genome length 37,216 bps

CDS count 48

Completeness 93.28% (high-quality)

geNomad score 0.9749

Prediction confidence Confident

Genome information
Genome ID	UHGV-2027901
vOTU ID	vOTU-067191
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029119\|Ga0168816_100117\|provirus_83048_120263
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.28% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9749
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.12
Jumbo phage	No

Genome content
Genome length	37,216 bps
GC content	49.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	94.13%
Average CDS length	734.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2027901_1	PHROG	phrog_263	holin	lysis
UHGV-2027901_1	UniRef90	UniRef90_R6ITV1	Phage lysis protein holin	NA
UHGV-2027901_1	eggNOG-mapper	445971.ANASTE_00091	SPP1 phage holin	NA
UHGV-2027901_1	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-2027901_1	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-2027901_2	PHROG	phrog_1863	NA	unknown function
UHGV-2027901_2	UniRef90	UniRef90_A0A2K9NYV1	Holin	NA
UHGV-2027901_2	eggNOG-mapper	428125.CLOLEP_01781	NA	NA
UHGV-2027901_3	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2027901_3	PHROG	phrog_435	endolysin	lysis
UHGV-2027901_3	UniRef90	UniRef90_R6HWJ2	MurNAc-LAA domain-containing protein	NA
UHGV-2027901_3	eggNOG-mapper	1203606.HMPREF1526_00346	Ami_3	NA
UHGV-2027901_3	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2027901_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2027901_3	Structural annotation	PF01520, PF15591, MF_00562, TIGR02883, NF033202, COG0860	NA	NA
UHGV-2027901_4	PHROG	phrog_27545	NA	unknown function
UHGV-2027901_4	UniRef90	UniRef90_D1PRE7	Glycosyl hydrolase, family 18 family protein	NA
UHGV-2027901_4	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-2027901_4	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-2027901_6	Structural annotation	PF02973	NA	NA
UHGV-2027901_7	Structural annotation	PF10651, NF009453	NA	NA
UHGV-2027901_9	PHROG	phrog_6616	tail protein	tail
UHGV-2027901_9	UniRef90	UniRef90_A0A0J1FXD9	Peptidase S74 domain-containing protein	NA
UHGV-2027901_9	eggNOG-mapper	1294142.CINTURNW_1042	Phage minor structural protein	NA
UHGV-2027901_9	COG	COG4926	Phage-related protein	NA
UHGV-2027901_9	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-2027901_10	PHROG	phrog_1194	NA	unknown function
UHGV-2027901_10	UniRef90	UniRef90_A0A0R1Q5P9	NA	NA
UHGV-2027901_10	eggNOG-mapper	1400520.LFAB_05290	NA	NA
UHGV-2027901_10	Pfam	PF20458	NA	DUF6711
UHGV-2027901_10	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2027901_11	PHROG	phrog_26910	NA	unknown function
UHGV-2027901_11	eggNOG-mapper	1117958.PE143B_0109845	NA	NA
UHGV-2027901_12	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2027901_12	eggNOG-mapper	645991.Sgly_0352	SLT domain	NA
UHGV-2027901_12	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2027901_13	UniRef90	UniRef90_UPI0012BCDD8A	NA	NA
UHGV-2027901_13	eggNOG-mapper	1211844.CBLM010000016_gene1484	NA	NA
UHGV-2027901_13	Structural annotation	PF19591	NA	NA
UHGV-2027901_14	PHROG	phrog_158	major tail protein	tail
UHGV-2027901_14	UniRef90	UniRef90_R6HYI8	Major tail protein putative	NA
UHGV-2027901_14	eggNOG-mapper	1209989.TepiRe1_1157	Phage tail tube protein, TTP	NA
UHGV-2027901_14	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-2027901_14	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-2027901_15	Structural annotation	PF05657	NA	NA
UHGV-2027901_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2027901_16	UniRef90	UniRef90_R6IVT6	Bacteriophage protein PF04883 family	NA
UHGV-2027901_16	eggNOG-mapper	1280692.AUJL01000025_gene2076	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2027901_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2027901_16	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2027901_16	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2027901_17	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2027901_18	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2027901_18	UniRef90	UniRef90_R6I6I7	NA	NA
UHGV-2027901_18	eggNOG-mapper	268407.PWYN_03015	NA	NA
UHGV-2027901_19	PHROG	phrog_283	major head protein	head and packaging
UHGV-2027901_19	UniRef90	UniRef90_UPI001896DBE2	P22 coat protein	NA
UHGV-2027901_19	eggNOG-mapper	1297617.JPJD01000059_gene2633	P22 coat protein - gene protein 5	NA
UHGV-2027901_19	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-2027901_19	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2027901_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2027901_20	UniRef90	UniRef90_UPI001651708C	phage scaffolding protein	NA
UHGV-2027901_20	eggNOG-mapper	1196028.ALEF01000043_gene465	Phage minor structural protein GP20	NA
UHGV-2027901_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2027901_22	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2027901_22	UniRef90	UniRef90_A0A3D2QEP6	Phage_Mu_F domain-containing protein	NA
UHGV-2027901_22	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-2027901_22	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2027901_22	Pfam	PF14424	The BURPS668_1122 family of deaminases	Toxin-deaminase
UHGV-2027901_22	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2027901_22	COG	COG2369	NA	NA
UHGV-2027901_23	PHROG	phrog_64	portal protein	head and packaging
UHGV-2027901_23	UniRef90	UniRef90_R6IBR5	Phage portal protein	NA
UHGV-2027901_23	eggNOG-mapper	97138.C820_00238	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2027901_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2027901_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2027901_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2027901_24	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2027901_24	UniRef90	UniRef90_R6I0M1	Phage terminase large subunit PBSX family	NA
UHGV-2027901_24	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-2027901_24	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2027901_24	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2027901_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2027901_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-2027901_24	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2027901_25	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2027901_25	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2027901_25	UniRef90	UniRef90_A0A374UNI2	Terminase small subunit	NA
UHGV-2027901_25	eggNOG-mapper	608534.GCWU000341_02298	Terminase small subunit	NA
UHGV-2027901_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2027901_25	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2027901_25	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2027901_26	KOfam	K18831	higA; HTH-type transcriptional regulator / antitoxin HigA	NA
UHGV-2027901_26	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-2027901_26	UniRef90	UniRef90_Q0AZN6	Putative plasmid maintenance system antidote protein, XRE family	NA
UHGV-2027901_26	eggNOG-mapper	335541.Swol_0483	Addiction module antidote protein, HigA	NA
UHGV-2027901_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2027901_26	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2027901_26	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-2027901_26	Structural annotation	PF12844, MF_00535, TIGR02607, COG3093, COG2856	NA	NA
UHGV-2027901_27	PHROG	phrog_3066	toxin of TA system	moron, auxiliary metabolic gene and host takeover
UHGV-2027901_27	UniRef90	UniRef90_E2NQP8	Putative toxin-antitoxin system, toxin component, RelE family	NA
UHGV-2027901_27	eggNOG-mapper	1410674.JNKU01000019_gene173	Plasmid maintenance system killer	NA
UHGV-2027901_27	Pfam	PF05015	RelE-like toxin of type II toxin-antitoxin system HigB	HigB-like_toxin
UHGV-2027901_27	COG	COG3549	Plasmid maintenance system killer protein	NA
UHGV-2027901_27	Structural annotation	PF05015, TIGR02385, COG3549	NA	NA
UHGV-2027901_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2027901_28	UniRef90	UniRef90_UPI001D05F87A	RNA polymerase subunit sigma-24	NA
UHGV-2027901_28	eggNOG-mapper	1235835.C814_01174	NA	NA
UHGV-2027901_28	Structural annotation	PF04545	NA	NA
UHGV-2027901_29	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-2027901_29	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2027901_29	UniRef90	UniRef90_A0A2V2FWS9	DEAD/DEAH box helicase	NA
UHGV-2027901_29	eggNOG-mapper	1117108.PAALTS15_09950	SNF2 family N-terminal domain	NA
UHGV-2027901_29	PADLOC	DpdE_00010	DpdE	DPD
UHGV-2027901_29	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2027901_29	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2027901_29	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-2027901_30	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2027901_30	UniRef90	UniRef90_A0A2V2FU35	VRR-NUC domain-containing protein	NA
UHGV-2027901_30	eggNOG-mapper	445335.CBN_2999	VRR-NUC domain-containing protein	NA
UHGV-2027901_30	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-2027901_32	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2027901_32	UniRef90	UniRef90_A0A2V2FYQ5	Virulence-associated protein E	NA
UHGV-2027901_32	eggNOG-mapper	1203606.HMPREF1526_00242	virulence-associated E family protein	NA
UHGV-2027901_32	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-2027901_32	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-2027901_32	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-2027901_33	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-2027901_33	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2027901_33	UniRef90	UniRef90_A0A329UVL7	POLAc domain-containing protein	NA
UHGV-2027901_33	eggNOG-mapper	1203606.HMPREF1526_00239	DNA polymerase	NA
UHGV-2027901_33	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-2027901_33	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-2027901_33	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-2027901_34	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2027901_34	UniRef90	UniRef90_A0A2V2FV77	NA	NA
UHGV-2027901_34	eggNOG-mapper	1408437.JNJN01000081_gene1517	NA	NA
UHGV-2027901_34	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-2027901_34	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-2027901_36	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2027901_36	UniRef90	UniRef90_A0A2V2FS99	NA	NA
UHGV-2027901_36	eggNOG-mapper	1449126.JQKL01000006_gene838	NA	NA
UHGV-2027901_36	Pfam	PF10926	NA	DUF2800
UHGV-2027901_36	COG	COG2887	RecB family exonuclease	NA
UHGV-2027901_36	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2027901_37	PHROG	phrog_22695	NA	unknown function
UHGV-2027901_37	eggNOG-mapper	1120971.AUCA01000043_gene1180	NA	NA
UHGV-2027901_39	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2027901_39	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2027901_39	UniRef90	UniRef90_R6HY73	HTH cro/C1-type domain-containing protein	NA
UHGV-2027901_39	eggNOG-mapper	457412.RSAG_04663	sequence-specific DNA binding	NA
UHGV-2027901_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2027901_39	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2027901_39	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-2027901_41	PHROG	phrog_924	NA	unknown function
UHGV-2027901_41	UniRef90	UniRef90_UPI001958DC75	NA	NA
UHGV-2027901_41	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-2027901_41	Pfam	PF04448	NA	DUF551
UHGV-2027901_41	Structural annotation	PF04448	NA	NA
UHGV-2027901_43	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2027901_43	PHROG	phrog_18750	NA	unknown function
UHGV-2027901_43	UniRef90	UniRef90_A0A3D5TM41	Hydrolase_2 domain-containing protein	NA
UHGV-2027901_43	eggNOG-mapper	445972.ANACOL_03333	Cell wall hydrolase	NA
UHGV-2027901_43	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-2027901_43	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-2027901_43	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-2027901_45	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-2027901_45	UniRef90	UniRef90_UPI0013E96CDD	helix-turn-helix transcriptional regulator	NA
UHGV-2027901_45	eggNOG-mapper	1033737.CAEV01000029_gene313	Helix-turn-helix	NA
UHGV-2027901_45	Pfam	PF05339	NA	DUF739
UHGV-2027901_45	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-2027901_46	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2027901_46	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2027901_46	UniRef90	UniRef90_R6MAH2	LexA repressor	NA
UHGV-2027901_46	eggNOG-mapper	478749.BRYFOR_07570	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-2027901_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2027901_46	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2027901_46	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2027901_46	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-2027901_47	PHROG	phrog_5978	NA	unknown function
UHGV-2027901_47	UniRef90	UniRef90_A0A2N0UXR1	Adenosine monophosphate-protein transferase SoFic	NA
UHGV-2027901_47	eggNOG-mapper	936375.HMPREF1152_1541	Filamentation induced by cAMP protein fic	NA
UHGV-2027901_47	Pfam	PF02661	Fic/DOC family	Fic
UHGV-2027901_47	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-2027901_47	COG	COG3177	Fic family protein	NA
UHGV-2027901_47	Structural annotation	PF07183, MF_01911, NF040876, COG3177	NA	NA
UHGV-2027901_48	KOfam	K14059	int; integrase	NA
UHGV-2027901_48	PHROG	phrog_1	integrase	integration and excision
UHGV-2027901_48	UniRef90	UniRef90_UPI0005AA7FA8	site-specific integrase	NA
UHGV-2027901_48	eggNOG-mapper	1378168.N510_03298	Belongs to the 'phage' integrase family	NA
UHGV-2027901_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2027901_48	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2027901_48	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA