UHGV-2027978

Genome information

vOTU vOTU-019952

Genome length 33,729 bps

CDS count 43

Completeness 82.62% (medium-quality)

geNomad score 0.9622

Prediction confidence Confident

Genome information
Genome ID	UHGV-2027978
vOTU ID	vOTU-019952
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029088\|Ga0169204_100091\|provirus_76_33804
BioSample	SAMEA2579938
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.62% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9622
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.82
Jumbo phage	No

Genome content
Genome length	33,729 bps
GC content	37.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	86.60%
Average CDS length	682.61 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2027978_1	PHROG	phrog_9321	NA	unknown function
UHGV-2027978_2	PHROG	phrog_6616	tail protein	tail
UHGV-2027978_2	UniRef90	UniRef90_UPI0008BC4959	gp58-like family protein	NA
UHGV-2027978_2	eggNOG-mapper	1158602.I590_01695	gp58-like protein	NA
UHGV-2027978_2	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-2027978_3	PHROG	phrog_1194	NA	unknown function
UHGV-2027978_3	UniRef90	UniRef90_D7RWK1	Gp18	NA
UHGV-2027978_3	eggNOG-mapper	1158602.I590_01694	NA	NA
UHGV-2027978_3	Pfam	PF20458	NA	DUF6711
UHGV-2027978_3	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2027978_4	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2027978_4	UniRef90	UniRef90_UPI000534E6C8	transglycosylase SLT domain-containing protein	NA
UHGV-2027978_4	eggNOG-mapper	1158602.I590_01693	SLT domain	NA
UHGV-2027978_4	COG	COG3953	SLT domain protein	NA
UHGV-2027978_5	PHROG	phrog_2066	NA	unknown function
UHGV-2027978_5	eggNOG-mapper	1140002.I570_01434	NA	NA
UHGV-2027978_6	PHROG	phrog_183	tail chaperone protein	tail
UHGV-2027978_6	UniRef90	UniRef90_UPI00177CE503	NA	NA
UHGV-2027978_6	eggNOG-mapper	1158602.I590_01691	NA	NA
UHGV-2027978_6	Pfam	PF19591	NA	DUF6096
UHGV-2027978_6	Structural annotation	PF19591	NA	NA
UHGV-2027978_7	PHROG	phrog_158	major tail protein	tail
UHGV-2027978_7	UniRef90	UniRef90_UPI000B4AA6D0	phage tail protein	NA
UHGV-2027978_7	eggNOG-mapper	1140002.I570_01436	Phage tail tube protein, TTP	NA
UHGV-2027978_7	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-2027978_7	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-2027978_8	PHROG	phrog_78	tail terminator	connector
UHGV-2027978_8	eggNOG-mapper	1158602.I590_01689	NA	NA
UHGV-2027978_8	Structural annotation	PF05657	NA	NA
UHGV-2027978_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2027978_9	UniRef90	UniRef90_UPI00178309EF	HK97 gp10 family phage protein	NA
UHGV-2027978_9	eggNOG-mapper	1158602.I590_01688	NA	NA
UHGV-2027978_9	Structural annotation	TIGR01725	NA	NA
UHGV-2027978_10	PHROG	phrog_2168	NA	unknown function
UHGV-2027978_10	UniRef90	UniRef90_D7RWJ2	Gp11	NA
UHGV-2027978_10	eggNOG-mapper	1140002.I570_01439	NA	NA
UHGV-2027978_10	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2027978_11	PHROG	phrog_1161	head-tail adaptor	connector
UHGV-2027978_11	UniRef90	UniRef90_UPI00137ABDD7	phage head-tail connector protein	NA
UHGV-2027978_11	eggNOG-mapper	1140002.I570_01440	NA	NA
UHGV-2027978_11	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2027978_11	Structural annotation	PF05135	NA	NA
UHGV-2027978_12	PHROG	phrog_247	major head protein	head and packaging
UHGV-2027978_12	UniRef90	UniRef90_UPI001E53E6E9	major capsid protein	NA
UHGV-2027978_12	eggNOG-mapper	1140002.I570_01441	NA	NA
UHGV-2027978_12	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-2027978_12	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-2027978_13	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-2027978_13	UniRef90	UniRef90_UPI0017809275	NA	NA
UHGV-2027978_13	eggNOG-mapper	1140002.I570_01442	NA	NA
UHGV-2027978_13	Pfam	PF14265	NA	DUF4355
UHGV-2027978_13	Structural annotation	PF14265	NA	NA
UHGV-2027978_14	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2027978_14	UniRef90	UniRef90_S0LFE1	Phage_Mu_F domain-containing protein	NA
UHGV-2027978_14	eggNOG-mapper	1158602.I590_01683	Phage Mu protein F like protein	NA
UHGV-2027978_14	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2027978_14	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2027978_14	COG	COG2369	NA	NA
UHGV-2027978_14	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-2027978_15	KOfam	K07584	NA	NA
UHGV-2027978_15	PHROG	phrog_4478	peptidase	other
UHGV-2027978_15	UniRef90	UniRef90_UPI00066581AB	ribosomal-processing cysteine protease Prp	NA
UHGV-2027978_15	eggNOG-mapper	1158602.I590_01682	Pfam:Peptidase_C108	NA
UHGV-2027978_15	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-2027978_15	COG	COG2868	NA	NA
UHGV-2027978_16	PHROG	phrog_64	portal protein	head and packaging
UHGV-2027978_16	UniRef90	UniRef90_S0LHP6	SPP1 family phage portal protein	NA
UHGV-2027978_16	eggNOG-mapper	1140002.I570_01445	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2027978_16	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2027978_16	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-2027978_16	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-2027978_17	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2027978_17	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2027978_17	UniRef90	UniRef90_S0S8H6	PBSX family phage terminase, large subunit	NA
UHGV-2027978_17	eggNOG-mapper	1158602.I590_01680	Terminase RNAseH like domain	NA
UHGV-2027978_17	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2027978_17	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2027978_17	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2027978_17	COG	COG1783	Phage terminase large subunit	NA
UHGV-2027978_17	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-2027978_17	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2027978_18	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-2027978_18	UniRef90	UniRef90_S0L258	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-2027978_18	eggNOG-mapper	1140002.I570_01447	Helix-turn-helix of insertion element transposase	NA
UHGV-2027978_18	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-2027978_18	Structural annotation	PF13022	NA	NA
UHGV-2027978_19	PHROG	phrog_1202	NA	unknown function
UHGV-2027978_19	eggNOG-mapper	1158602.I590_01678	NA	NA
UHGV-2027978_19	Structural annotation	PF18789	NA	NA
UHGV-2027978_20	PHROG	phrog_24047	NA	unknown function
UHGV-2027978_20	eggNOG-mapper	1140002.I570_01449	NA	NA
UHGV-2027978_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2027978_21	UniRef90	UniRef90_UPI000F505473	sigma-70 family RNA polymerase sigma factor	NA
UHGV-2027978_21	eggNOG-mapper	1140002.I570_01450	NA	NA
UHGV-2027978_21	Structural annotation	PF04545, MF_00674, TIGR02984	NA	NA
UHGV-2027978_22	PHROG	phrog_5780	NA	unknown function
UHGV-2027978_22	eggNOG-mapper	1140002.I570_01451	NA	NA
UHGV-2027978_23	PHROG	phrog_34095	NA	unknown function
UHGV-2027978_23	UniRef90	UniRef90_UPI0010F8F270	NA	NA
UHGV-2027978_23	eggNOG-mapper	1140002.I570_01452	NA	NA
UHGV-2027978_24	KOfam	K21908	hdeD; membrane protein HdeD	NA
UHGV-2027978_24	PHROG	phrog_38735	NA	unknown function
UHGV-2027978_24	UniRef90	UniRef90_UPI001A912AB2	NA	NA
UHGV-2027978_24	eggNOG-mapper	1140002.I570_01453	NA	NA
UHGV-2027978_24	Pfam	PF03729	NA	DUF308
UHGV-2027978_24	COG	COG3247	NA	NA
UHGV-2027978_25	PHROG	phrog_14113	NA	unknown function
UHGV-2027978_28	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2027978_28	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2027978_28	UniRef90	UniRef90_A0A7H4KRA4	DNA replication protein DnaC	NA
UHGV-2027978_28	eggNOG-mapper	945021.TEH_08400	IstB-like ATP binding protein	NA
UHGV-2027978_28	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-2027978_28	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2027978_28	Structural annotation	PF01695, MF_00377, NF005931, COG1484	NA	NA
UHGV-2027978_29	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2027978_29	UniRef90	UniRef90_A0A7H4KRA3	Phg_2220_C domain-containing protein	NA
UHGV-2027978_29	eggNOG-mapper	945021.TEH_18370	Helix-turn-helix domain	NA
UHGV-2027978_29	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2027978_29	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-2027978_29	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-2027978_29	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-2027978_29	Structural annotation	PF09524, PF04703, TIGR02220, NF040939, COG3355	NA	NA
UHGV-2027978_30	eggNOG-mapper	1140003.I573_01280	NA	NA
UHGV-2027978_31	eggNOG-mapper	1158614.I592_01810	NA	NA
UHGV-2027978_33	PHROG	phrog_2902	anti-repressor	transcription regulation
UHGV-2027978_33	UniRef90	UniRef90_A0A7H4KR99	ORF6C domain protein	NA
UHGV-2027978_33	eggNOG-mapper	1140002.I570_01470	ORF6C domain	NA
UHGV-2027978_33	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-2027978_33	Structural annotation	PF10552	NA	NA
UHGV-2027978_34	PHROG	phrog_1733	NA	unknown function
UHGV-2027978_34	UniRef90	UniRef90_UPI0013EC4DD3	NA	NA
UHGV-2027978_34	eggNOG-mapper	646413.C5IUM1_9CAUD	NA	NA
UHGV-2027978_34	Pfam	PF11300	NA	DUF3102
UHGV-2027978_34	Structural annotation	PF11300, NF038070	NA	NA
UHGV-2027978_35	PHROG	phrog_904	excisionase	integration and excision
UHGV-2027978_35	UniRef90	UniRef90_A0A4U9YB53	Excisionase	NA
UHGV-2027978_35	eggNOG-mapper	1140002.I570_01473	NA	NA
UHGV-2027978_36	PHROG	phrog_9976	anti-repressor	transcription regulation
UHGV-2027978_36	UniRef90	UniRef90_A0A1L8X5Y4	Antirepressor	NA
UHGV-2027978_36	eggNOG-mapper	634956.Geoth_0745	COG3617 Prophage antirepressor	NA
UHGV-2027978_36	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2027978_36	COG	COG3617	Prophage antirepressor	NA
UHGV-2027978_36	Structural annotation	PF02498, NF008573, COG3617	NA	NA
UHGV-2027978_37	UniRef90	UniRef90_A0A7Z1Y8L0	XRE family transcriptional regulator	NA
UHGV-2027978_37	eggNOG-mapper	1158614.I592_02300	NA	NA
UHGV-2027978_37	Structural annotation	PF21291, TIGR04111, COG3655	NA	NA
UHGV-2027978_38	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2027978_38	UniRef90	UniRef90_A0A7H4KSA1	Helix-turn-helix domain-containing protein	NA
UHGV-2027978_38	eggNOG-mapper	1158614.I592_02301	Helix-turn-helix XRE-family like proteins	NA
UHGV-2027978_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2027978_38	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2027978_38	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-2027978_39	PHROG	phrog_1516	NA	unknown function
UHGV-2027978_39	UniRef90	UniRef90_A0A1L8X603	Peptidase_M78 domain-containing protein	NA
UHGV-2027978_39	eggNOG-mapper	1158614.I592_02302	IrrE N-terminal-like domain	NA
UHGV-2027978_39	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2027978_39	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2027978_40	PHROG	phrog_10226	NA	unknown function
UHGV-2027978_40	eggNOG-mapper	1158602.I590_01653	NA	NA
UHGV-2027978_40	Structural annotation	PF01878, COG4127	NA	NA
UHGV-2027978_42	KOfam	K14059	int; integrase	NA
UHGV-2027978_42	PHROG	phrog_1	integrase	integration and excision
UHGV-2027978_42	UniRef90	UniRef90_A0A7H4KS35	Site-specific tyrosine recombinase XerC-family protein	NA
UHGV-2027978_42	eggNOG-mapper	1158602.I590_01651	Phage integrase family	NA
UHGV-2027978_42	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-2027978_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2027978_42	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2027978_42	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2027978_43	KOfam	K03530	hupB; DNA-binding protein HU-beta	NA
UHGV-2027978_43	PHROG	phrog_379	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2027978_43	UniRef90	UniRef90_A0A1L8TPW6	DNA-binding protein HU	NA
UHGV-2027978_43	eggNOG-mapper	1140002.I570_01479	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions	NA
UHGV-2027978_43	Pfam	PF00216	Bacterial DNA-binding protein	Bac_DNA_binding
UHGV-2027978_43	COG	COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	NA
UHGV-2027978_43	Structural annotation	PF00216, MF_00381, NF007945, COG0776	NA	NA