UHGV-2028419

Genome information

Genome length 34,542 bps

CDS count 50

Completeness 91.29% (high-quality)

geNomad score 0.9740

Prediction confidence Confident

Genome information
Genome ID	UHGV-2028419
vOTU ID	vOTU-014004
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029115\|Ga0168848_100022\|provirus_50173_84714
BioSample	SAMEA2737856
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.29% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9740
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.58
Jumbo phage	No

Genome content
Genome length	34,542 bps
GC content	36.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	92.28%
Average CDS length	639.18 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2028419_1	PHROG	phrog_3136	NA	unknown function
UHGV-2028419_1	UniRef90	UniRef90_R5PEQ8	F-type H+-transporting ATPase alpha chain	NA
UHGV-2028419_1	eggNOG-mapper	515620.EUBELI_20476	ASCH	NA
UHGV-2028419_1	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-2028419_1	Structural annotation	PF12961, NF002008, COG4933	NA	NA
UHGV-2028419_2	PHROG	phrog_6345	NA	unknown function
UHGV-2028419_2	UniRef90	UniRef90_A0A415JXD3	N-acetyltransferase	NA
UHGV-2028419_2	eggNOG-mapper	515620.EUBELI_20477	acetyltransferase	NA
UHGV-2028419_2	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-2028419_2	Structural annotation	PF00583, PF01878, MF_02210, MF_00771, NF000482, NF002008, COG0456, COG2947	NA	NA
UHGV-2028419_3	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-2028419_3	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2028419_3	UniRef90	UniRef90_A0A396NX14	Endonuclease	NA
UHGV-2028419_3	eggNOG-mapper	411462.DORLON_00821	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-2028419_3	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-2028419_3	COG	COG4748	NA	NA
UHGV-2028419_3	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-2028419_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2028419_4	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2028419_4	UniRef90	UniRef90_R6A4U7	DNA-binding protein	NA
UHGV-2028419_4	eggNOG-mapper	1235798.C817_00620	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2028419_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2028419_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2028419_4	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-2028419_5	UniRef90	UniRef90_UPI000E7391FB	helix-turn-helix domain-containing protein	NA
UHGV-2028419_5	eggNOG-mapper	1321782.HMPREF1986_02244	Helix-turn-helix domain	NA
UHGV-2028419_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2028419_5	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2028419_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2028419_12	PHROG	phrog_674	NA	unknown function
UHGV-2028419_12	UniRef90	UniRef90_A0A371ATG1	NA	NA
UHGV-2028419_12	eggNOG-mapper	357809.Cphy_2989	NA	NA
UHGV-2028419_12	Pfam	PF07083	NA	DUF1351
UHGV-2028419_12	Structural annotation	PF07083	NA	NA
UHGV-2028419_13	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2028419_13	UniRef90	UniRef90_A0A7C6JWG7	Recombinase	NA
UHGV-2028419_13	eggNOG-mapper	1415775.U729_2586	ERF superfamily	NA
UHGV-2028419_13	Pfam	PF04404	ERF superfamily	ERF
UHGV-2028419_13	Structural annotation	PF04404	NA	NA
UHGV-2028419_14	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2028419_14	UniRef90	UniRef90_A0A285PU94	Recombinase NinB	NA
UHGV-2028419_14	eggNOG-mapper	411490.ANACAC_00804	NA	NA
UHGV-2028419_14	Structural annotation	PF05772, NF007281	NA	NA
UHGV-2028419_15	PHROG	phrog_7566	NA	unknown function
UHGV-2028419_15	UniRef90	UniRef90_A0A3D5LSW4	Phosphoenolpyruvate carboxykinase	NA
UHGV-2028419_15	eggNOG-mapper	1507.HMPREF0262_00433	NA	NA
UHGV-2028419_16	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2028419_16	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2028419_16	UniRef90	UniRef90_A0A6N7WNE3	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2028419_16	eggNOG-mapper	33035.JPJF01000071_gene4466	crossover junction endodeoxyribonuclease activity	NA
UHGV-2028419_16	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2028419_16	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-2028419_17	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2028419_17	UniRef90	UniRef90_E4QBK3	Putative transcriptional regulator, GntR family	NA
UHGV-2028419_17	eggNOG-mapper	796940.HMPREF9628_00167	NA	NA
UHGV-2028419_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2028419_17	Structural annotation	PF09202, MF_01819, TIGR01610, COG1959	NA	NA
UHGV-2028419_19	UniRef90	UniRef90_UPI0003FD05FD	NA	NA
UHGV-2028419_19	eggNOG-mapper	397291.C804_01035	NA	NA
UHGV-2028419_19	Pfam	PF18941	NA	DUF5688
UHGV-2028419_19	Structural annotation	PF18941, MF_01548, NF010189, COG4848	NA	NA
UHGV-2028419_20	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-2028419_20	UniRef90	UniRef90_A0A3D5LQU6	Toxin Bro	NA
UHGV-2028419_20	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-2028419_20	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2028419_20	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-2028419_20	COG	COG3617	Prophage antirepressor	NA
UHGV-2028419_20	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-2028419_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2028419_22	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-2028419_22	Structural annotation	PF02996	NA	NA
UHGV-2028419_24	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2028419_24	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2028419_24	UniRef90	UniRef90_A0A356C6K0	Terminase small subunit	NA
UHGV-2028419_24	eggNOG-mapper	1499683.CCFF01000014_gene3916	Terminase small subunit	NA
UHGV-2028419_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2028419_24	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2028419_24	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2028419_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2028419_25	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2028419_25	UniRef90	UniRef90_A0A413YU24	Terminase	NA
UHGV-2028419_25	eggNOG-mapper	1391647.AVSV01000003_gene1802	Phage terminase, large subunit, PBSX family	NA
UHGV-2028419_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2028419_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-2028419_25	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2028419_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-2028419_26	UniRef90	UniRef90_A0A3D5LTG9	Capsid protein	NA
UHGV-2028419_26	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-2028419_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2028419_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2028419_27	UniRef90	UniRef90_A0A3D5LQU4	Minor capsid protein	NA
UHGV-2028419_27	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-2028419_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2028419_27	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-2028419_27	Structural annotation	PF06152	NA	NA
UHGV-2028419_29	UniRef90	UniRef90_A0A358PKZ1	CopG family transcriptional regulator	NA
UHGV-2028419_29	eggNOG-mapper	1235793.C809_02220	NA	NA
UHGV-2028419_29	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-2028419_30	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-2028419_30	UniRef90	UniRef90_A0A3D5LSU5	Phage regulatory protein	NA
UHGV-2028419_30	eggNOG-mapper	1499683.CCFF01000014_gene3944	ORF6C domain	NA
UHGV-2028419_30	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-2028419_30	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-2028419_30	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-2028419_30	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2028419_30	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-2028419_32	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-2028419_32	eggNOG-mapper	483218.BACPEC_01156	NA	NA
UHGV-2028419_33	PHROG	phrog_422	major head protein	head and packaging
UHGV-2028419_33	UniRef90	UniRef90_A0A356C4N2	Capsid protein	NA
UHGV-2028419_33	eggNOG-mapper	742740.HMPREF9474_03505	NA	NA
UHGV-2028419_34	PHROG	phrog_1378	NA	unknown function
UHGV-2028419_34	eggNOG-mapper	742740.HMPREF9474_03506	NA	NA
UHGV-2028419_35	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2028419_35	eggNOG-mapper	483218.BACPEC_01153	NA	NA
UHGV-2028419_36	PHROG	phrog_8710	NA	unknown function
UHGV-2028419_36	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-2028419_36	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-2028419_37	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2028419_37	eggNOG-mapper	483218.BACPEC_01151	NA	NA
UHGV-2028419_38	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-2028419_38	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-2028419_38	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-2028419_38	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-2028419_38	Structural annotation	PF12691, COG5003	NA	NA
UHGV-2028419_39	PHROG	phrog_820	major tail protein	tail
UHGV-2028419_39	UniRef90	UniRef90_T3DDR1	Phage major tail 2 family protein	NA
UHGV-2028419_39	eggNOG-mapper	1151292.QEW_2426	NA	NA
UHGV-2028419_39	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2028419_40	PHROG	phrog_8300	NA	unknown function
UHGV-2028419_40	eggNOG-mapper	1151292.QEW_2425	NA	NA
UHGV-2028419_40	Structural annotation	PF06896	NA	NA
UHGV-2028419_41	PHROG	phrog_8355	NA	unknown function
UHGV-2028419_41	UniRef90	UniRef90_UPI0006BBA9AA	Gp15 family bacteriophage protein	NA
UHGV-2028419_41	eggNOG-mapper	1415775.U729_2613	NA	NA
UHGV-2028419_41	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2028419_41	Structural annotation	PF06854	NA	NA
UHGV-2028419_42	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2028419_42	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-2028419_42	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-2028419_42	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2028419_42	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2028419_43	PHROG	phrog_1194	NA	unknown function
UHGV-2028419_43	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-2028419_43	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2028419_45	PHROG	phrog_6616	tail protein	tail
UHGV-2028419_45	UniRef90	UniRef90_A0A1C5VLA0	Collagen triple helix repeat (20 copies)	NA
UHGV-2028419_45	eggNOG-mapper	1499683.CCFF01000014_gene3896	Phage minor structural protein	NA
UHGV-2028419_45	COG	COG4926	Phage-related protein	NA
UHGV-2028419_45	Structural annotation	PF14594, PF00629, NF033848, NF033675, COG3500	NA	NA
UHGV-2028419_46	PHROG	phrog_38044	NA	unknown function
UHGV-2028419_46	eggNOG-mapper	1437603.BMON_1128	NA	NA
UHGV-2028419_48	PHROG	phrog_1401	NA	unknown function
UHGV-2028419_48	UniRef90	UniRef90_UPI0007099B7A	NA	NA
UHGV-2028419_48	eggNOG-mapper	1347392.CCEZ01000045_gene2	NA	NA
UHGV-2028419_48	Structural annotation	PF07761	NA	NA
UHGV-2028419_49	PHROG	phrog_199	holin	lysis
UHGV-2028419_49	UniRef90	UniRef90_A0A3D5LSL4	Holin	NA
UHGV-2028419_49	eggNOG-mapper	411470.RUMGNA_02086	NA	NA
UHGV-2028419_49	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2028419_49	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2028419_49	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2028419_49	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2028419_50	KOfam	K07273	acm; lysozyme	NA
UHGV-2028419_50	PHROG	phrog_291	endolysin	lysis
UHGV-2028419_50	UniRef90	UniRef90_A0A174PB89	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-2028419_50	eggNOG-mapper	469596.HMPREF9488_01959	Glycosyl hydrolase family 25	NA
UHGV-2028419_50	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2028419_50	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2028419_50	Structural annotation	PF01183, PF11623, COG3757, COG2139	NA	NA