UHGV-2029158

Genome information

Genome length 31,303 bps

CDS count 46

Completeness 93.57% (high-quality)

geNomad score 0.9646

Prediction confidence Confident

Genome information
Genome ID	UHGV-2029158
vOTU ID	vOTU-010365
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029197\|Ga0167473_100018\|provirus_134495_165797
BioSample	SAMEA2737817
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.57% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9646
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.59
Jumbo phage	No

Genome content
Genome length	31,303 bps
GC content	32.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	94.56%
Average CDS length	647.87 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2029158_1	PHROG	phrog_3300	transposase	integration and excision
UHGV-2029158_1	UniRef90	UniRef90_UPI001959522E	Rpn family recombination-promoting nuclease/putative transposase	NA
UHGV-2029158_1	eggNOG-mapper	1122216.AUHW01000002_gene1745	PD-(D/E)XK nuclease family transposase	NA
UHGV-2029158_1	Pfam	PF12784	PD-(D/E)XK nuclease family transposase	PDDEXK_2
UHGV-2029158_1	NCBIFam	TIGR01784.1	Rpn family recombination-promoting nuclease/putative transposase	NA
UHGV-2029158_1	COG	COG5464	Recombination-promoting DNA endonuclease RpnC/YadD	NA
UHGV-2029158_1	Structural annotation	PF12784, TIGR01784, COG5464	NA	NA
UHGV-2029158_2	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2029158_2	UniRef90	UniRef90_UPI001D06ECCB	helix-turn-helix transcriptional regulator	NA
UHGV-2029158_2	eggNOG-mapper	1123511.KB905857_gene1687	sequence-specific DNA binding	NA
UHGV-2029158_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2029158_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2029158_2	Structural annotation	PF12844, MF_02017, NF007257, COG1476	NA	NA
UHGV-2029158_4	UniRef90	UniRef90_I0AKY5	DNA polymerase III subunit epsilon	NA
UHGV-2029158_4	eggNOG-mapper	2754.EH55_11715	PFAM Exonuclease RNase T and DNA polymerase III	NA
UHGV-2029158_4	Pfam	PF00929	Exonuclease	RNase_T
UHGV-2029158_4	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-2029158_6	PHROG	phrog_21028	NA	unknown function
UHGV-2029158_6	Structural annotation	PF21441	NA	NA
UHGV-2029158_11	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2029158_11	eggNOG-mapper	641107.CDLVIII_1314	NA	NA
UHGV-2029158_11	Structural annotation	PF11726	NA	NA
UHGV-2029158_12	KOfam	K03700	recU; recombination protein U	NA
UHGV-2029158_12	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2029158_12	UniRef90	UniRef90_A0A412CHF7	Holliday junction resolvase RecU	NA
UHGV-2029158_12	eggNOG-mapper	1151292.QEW_0324	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-2029158_12	Pfam	PF03838	Recombination protein U	RecU
UHGV-2029158_12	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-2029158_12	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-2029158_15	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-2029158_15	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2029158_15	UniRef90	UniRef90_A0A412CHM1	ParA family protein	NA
UHGV-2029158_15	eggNOG-mapper	1151292.QEW_0328	AAA domain	NA
UHGV-2029158_15	Pfam	PF13614	AAA domain	AAA_31
UHGV-2029158_15	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-2029158_15	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-2029158_16	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2029158_16	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2029158_16	UniRef90	UniRef90_A0A412CHQ9	ParB domain-containing protein	NA
UHGV-2029158_16	eggNOG-mapper	1415774.U728_489	Belongs to the ParB family	NA
UHGV-2029158_16	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2029158_16	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2029158_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2029158_19	UniRef90	UniRef90_A0A412CHD7	NA	NA
UHGV-2029158_19	eggNOG-mapper	927704.SELR_11170	DNA-templated transcription, initiation	NA
UHGV-2029158_19	Pfam	PF07374	NA	DUF1492
UHGV-2029158_19	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-2029158_19	Structural annotation	PF06530, TIGR01636, COG2739	NA	NA
UHGV-2029158_23	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2029158_23	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2029158_23	UniRef90	UniRef90_A0A412CHN3	HNH endonuclease	NA
UHGV-2029158_23	eggNOG-mapper	1089548.KI783301_gene3222	HNH endonuclease	NA
UHGV-2029158_23	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2029158_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2029158_24	PHROG	phrog_1066	NA	unknown function
UHGV-2029158_24	eggNOG-mapper	1232428.CAVO010000003_gene1013	NA	NA
UHGV-2029158_24	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-2029158_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2029158_25	UniRef90	UniRef90_A0A412CHE2	Terminase large subunit	NA
UHGV-2029158_25	eggNOG-mapper	1232428.CAVO010000003_gene1012	Phage Terminase	NA
UHGV-2029158_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2029158_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2029158_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2029158_25	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2029158_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-2029158_26	UniRef90	UniRef90_UPI001D0729FC	phage portal protein	NA
UHGV-2029158_26	eggNOG-mapper	1232428.CAVO010000003_gene1011	Phage portal protein	NA
UHGV-2029158_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2029158_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2029158_26	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2029158_27	KOfam	K06904	NA	NA
UHGV-2029158_27	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2029158_27	UniRef90	UniRef90_A0A412CHQ0	HK97 family phage prohead protease	NA
UHGV-2029158_27	eggNOG-mapper	1232428.CAVO010000003_gene1010	Caudovirus prohead serine protease	NA
UHGV-2029158_27	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2029158_27	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2029158_27	COG	COG3740	Phage head maturation protease	NA
UHGV-2029158_27	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2029158_28	PHROG	phrog_10	major head protein	head and packaging
UHGV-2029158_28	UniRef90	UniRef90_UPI000E53779F	phage major capsid protein	NA
UHGV-2029158_28	eggNOG-mapper	1341151.ASZU01000004_gene260	Phage capsid family	NA
UHGV-2029158_28	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2029158_28	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2029158_28	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2029158_28	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2029158_29	PHROG	phrog_32779	NA	unknown function
UHGV-2029158_29	eggNOG-mapper	1235803.C825_05332	Collagen triple helix repeat (20 copies)	NA
UHGV-2029158_29	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-2029158_30	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2029158_30	UniRef90	UniRef90_A0A412CHC9	Phage gp6-like head-tail connector protein	NA
UHGV-2029158_30	eggNOG-mapper	66692.ABC1335	Phage gp6-like head-tail connector protein	NA
UHGV-2029158_30	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2029158_30	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2029158_30	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2029158_31	PHROG	phrog_25	head closure Hc1	connector
UHGV-2029158_31	UniRef90	UniRef90_UPI001CD5F5A7	phage head closure protein	NA
UHGV-2029158_31	eggNOG-mapper	1232428.CAVO010000003_gene1007	Phage head-tail joining protein	NA
UHGV-2029158_31	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2029158_31	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2029158_31	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2029158_31	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2029158_32	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2029158_32	UniRef90	UniRef90_A0A412CI38	HK97 gp10 family phage protein	NA
UHGV-2029158_32	eggNOG-mapper	1232428.CAVO010000003_gene1006	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2029158_32	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2029158_32	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-2029158_33	PHROG	phrog_525	NA	unknown function
UHGV-2029158_33	eggNOG-mapper	397288.C806_00069	NA	NA
UHGV-2029158_33	Pfam	PF20765	NA	DUF6838
UHGV-2029158_33	Structural annotation	PF20765, COG5003	NA	NA
UHGV-2029158_34	PHROG	phrog_1480	tail sheath	tail
UHGV-2029158_34	UniRef90	UniRef90_UPI00195B2F80	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-2029158_34	eggNOG-mapper	1232428.CAVO010000003_gene1004	Phage tail sheath C-terminal domain	NA
UHGV-2029158_34	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-2029158_34	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-2029158_34	Structural annotation	PF10758, COG3497	NA	NA
UHGV-2029158_35	PHROG	phrog_365	tail protein	tail
UHGV-2029158_35	UniRef90	UniRef90_A0A412CHD4	Phage portal protein	NA
UHGV-2029158_35	eggNOG-mapper	1232428.CAVO010000003_gene1003	Phage tail tube protein	NA
UHGV-2029158_35	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-2029158_35	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-2029158_36	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-2029158_36	UniRef90	UniRef90_I0GWR7	Phage related protein	NA
UHGV-2029158_36	eggNOG-mapper	1410653.JHVC01000006_gene212	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-2029158_36	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-2029158_36	Structural annotation	PF08890	NA	NA
UHGV-2029158_37	PHROG	phrog_2722	NA	unknown function
UHGV-2029158_38	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-2029158_38	UniRef90	UniRef90_UPI00187699E2	phage tail tape measure protein	NA
UHGV-2029158_38	eggNOG-mapper	1232428.CAVO010000003_gene1001	Phage-related minor tail protein	NA
UHGV-2029158_38	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2029158_38	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2029158_38	COG	COG5283	Phage-related tail protein	NA
UHGV-2029158_38	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2029158_39	PHROG	phrog_5184	NA	unknown function
UHGV-2029158_39	UniRef90	UniRef90_A0A0L0W6M8	LysM domain-containing protein	NA
UHGV-2029158_39	eggNOG-mapper	1232428.CAVO010000003_gene1000	LysM domain	NA
UHGV-2029158_39	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-2029158_39	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-2029158_39	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-2029158_40	PHROG	phrog_400	tail protein	tail
UHGV-2029158_40	UniRef90	UniRef90_A0A848BXY8	Lytic transglycosylase domain-containing protein	NA
UHGV-2029158_40	eggNOG-mapper	1232428.CAVO010000003_gene999	NLP P60 protein	NA
UHGV-2029158_40	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2029158_40	Structural annotation	PF14594, PF00877, NF033848, NF008096, COG3500	NA	NA
UHGV-2029158_41	PHROG	phrog_579	NA	unknown function
UHGV-2029158_41	UniRef90	UniRef90_A0A412CHC2	NA	NA
UHGV-2029158_41	eggNOG-mapper	1232428.CAVO010000003_gene998	NA	NA
UHGV-2029158_41	Pfam	PF10844	NA	DUF2577
UHGV-2029158_41	Structural annotation	PF10844	NA	NA
UHGV-2029158_42	PHROG	phrog_120	baseplate protein	tail
UHGV-2029158_42	UniRef90	UniRef90_A0A412CHX1	NA	NA
UHGV-2029158_42	eggNOG-mapper	1232428.CAVO010000003_gene997	NA	NA
UHGV-2029158_42	Pfam	PF10934	NA	DUF2634
UHGV-2029158_42	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-2029158_42	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-2029158_43	PHROG	phrog_6	baseplate protein	tail
UHGV-2029158_43	UniRef90	UniRef90_UPI001D09317C	baseplate J/gp47 family protein	NA
UHGV-2029158_43	eggNOG-mapper	568816.Acin_1959	Baseplate J-like protein	NA
UHGV-2029158_43	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-2029158_43	COG	COG3299	NA	NA
UHGV-2029158_43	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-2029158_44	PHROG	phrog_521	tail protein	tail
UHGV-2029158_44	UniRef90	UniRef90_UPI001D081220	YmfQ family protein	NA
UHGV-2029158_44	eggNOG-mapper	568816.Acin_1327	NA	NA
UHGV-2029158_44	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-2029158_44	COG	COG3778	NA	NA
UHGV-2029158_44	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-2029158_45	eggNOG-mapper	1122918.KB907250_gene3597	Phage tail-collar fibre protein	NA
UHGV-2029158_45	Structural annotation	PF12571	NA	NA
UHGV-2029158_46	PHROG	phrog_18608	NA	unknown function
UHGV-2029158_46	eggNOG-mapper	1536772.R70723_29220	ATPase involved in DNA repair	NA
UHGV-2029158_46	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2029158_46	Structural annotation	PF18463, NF012201	NA	NA