UHGV-2029300

Genome information

Genome length 43,745 bps

CDS count 45

Completeness 90.38% (high-quality)

geNomad score 0.9703

Prediction confidence Confident

Genome information
Genome ID	UHGV-2029300
vOTU ID	vOTU-060979
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029204\|Ga0168686_100234\|provirus_2_43746
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.38% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9703
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.19
Jumbo phage	No

Genome content
Genome length	43,745 bps
GC content	49.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	89.13%
Average CDS length	870.13 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2029300_1	PHROG	phrog_14959	NA	unknown function
UHGV-2029300_1	eggNOG-mapper	470145.BACCOP_03719	NA	NA
UHGV-2029300_2	UniRef90	UniRef90_A0A395UR56	MFS transporter	NA
UHGV-2029300_2	eggNOG-mapper	470145.BACCOP_03720	NA	NA
UHGV-2029300_3	PHROG	phrog_24896	NA	unknown function
UHGV-2029300_3	eggNOG-mapper	484018.BACPLE_02703	membrane spanning protein TolA K03646	NA
UHGV-2029300_4	PHROG	phrog_22546	NA	unknown function
UHGV-2029300_4	eggNOG-mapper	483215.BACFIN_06295	Phage minor structural protein	NA
UHGV-2029300_4	COG	COG4926	Phage-related protein	NA
UHGV-2029300_4	Structural annotation	PF14594, PF04300, TIGR01665, NF033675, COG4926	NA	NA
UHGV-2029300_5	PHROG	phrog_6305	tail protein	tail
UHGV-2029300_5	eggNOG-mapper	470145.BACCOP_03724	NA	NA
UHGV-2029300_5	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2029300_6	PHROG	phrog_14295	NA	unknown function
UHGV-2029300_6	UniRef90	UniRef90_UPI001EDD8F9F	viral A-type inclusion protein	NA
UHGV-2029300_6	eggNOG-mapper	470145.BACCOP_03725	protein involved in control of spindle dynamics together with kar3p K00870	NA
UHGV-2029300_6	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2029300_7	PHROG	phrog_14983	NA	unknown function
UHGV-2029300_7	eggNOG-mapper	484018.BACPLE_02709	NA	NA
UHGV-2029300_7	Structural annotation	PF06894, TIGR01674	NA	NA
UHGV-2029300_8	PHROG	phrog_6767	NA	unknown function
UHGV-2029300_8	eggNOG-mapper	483215.BACFIN_05926	NA	NA
UHGV-2029300_8	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-2029300_9	UniRef90	UniRef90_A0A015X4G3	Putative 30S ribosomal protein S13	NA
UHGV-2029300_9	eggNOG-mapper	1121098.HMPREF1534_03362	NA	NA
UHGV-2029300_10	PHROG	phrog_23256	NA	unknown function
UHGV-2029300_10	eggNOG-mapper	762968.HMPREF9441_02370	NA	NA
UHGV-2029300_11	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2029300_11	PHROG	phrog_822	amidase	lysis
UHGV-2029300_11	UniRef90	UniRef90_E5UXC6	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-2029300_11	eggNOG-mapper	762968.HMPREF9441_02371	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2029300_11	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2029300_11	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-2029300_11	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-2029300_12	PHROG	phrog_267	major head protein	head and packaging
UHGV-2029300_12	eggNOG-mapper	762968.HMPREF9441_02372	NA	NA
UHGV-2029300_12	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2029300_13	PHROG	phrog_11321	NA	unknown function
UHGV-2029300_13	UniRef90	UniRef90_A0A413UVZ8	Peptidase	NA
UHGV-2029300_13	eggNOG-mapper	762968.HMPREF9441_02374	Phage prohead protease, HK97 family	NA
UHGV-2029300_13	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2029300_13	COG	COG3740	Phage head maturation protease	NA
UHGV-2029300_14	PHROG	phrog_4151	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2029300_14	UniRef90	UniRef90_A0A413UVS5	Terminase	NA
UHGV-2029300_14	eggNOG-mapper	762968.HMPREF9441_02373	Putative ATPase subunit of terminase (gpP-like)	NA
UHGV-2029300_14	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-2029300_14	COG	COG5484	NA	NA
UHGV-2029300_14	Structural annotation	PF06056	NA	NA
UHGV-2029300_15	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-2029300_15	UniRef90	UniRef90_A0A1H5SBZ9	Phage terminase large subunit	NA
UHGV-2029300_15	eggNOG-mapper	762968.HMPREF9441_02375	NA	NA
UHGV-2029300_15	COG	COG5362	Phage terminase large subunit	NA
UHGV-2029300_15	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5323	NA	NA
UHGV-2029300_16	PHROG	phrog_195	head-tail adaptor	connector
UHGV-2029300_16	UniRef90	UniRef90_A0A3A5QYE0	NA	NA
UHGV-2029300_16	eggNOG-mapper	762968.HMPREF9441_02377	NA	NA
UHGV-2029300_16	Pfam	PF07030	Bacteriophage Mu, Gp36	Phage_Mu_Gp36
UHGV-2029300_16	COG	COG4387	NA	NA
UHGV-2029300_16	Structural annotation	PF07030, COG4387	NA	NA
UHGV-2029300_17	PHROG	phrog_113	portal protein	head and packaging
UHGV-2029300_17	UniRef90	UniRef90_J9GNP7	NA	NA
UHGV-2029300_17	eggNOG-mapper	762968.HMPREF9441_02378	NA	NA
UHGV-2029300_17	Pfam	PF06074	NA	DUF935
UHGV-2029300_17	COG	COG4383	NA	NA
UHGV-2029300_17	Structural annotation	PF06074, MF_04135, TIGR01537, COG4383	NA	NA
UHGV-2029300_18	PHROG	phrog_23416	NA	unknown function
UHGV-2029300_18	UniRef90	UniRef90_E5UXB9	NA	NA
UHGV-2029300_18	eggNOG-mapper	762968.HMPREF9441_02379	Phage protein F-like protein	NA
UHGV-2029300_18	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2029300_18	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-2029300_18	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2029300_18	COG	COG2369	NA	NA
UHGV-2029300_18	Structural annotation	PF18798, PF04233, TIGR01641	NA	NA
UHGV-2029300_19	PHROG	phrog_38535	NA	unknown function
UHGV-2029300_19	eggNOG-mapper	762968.HMPREF9441_02380	NA	NA
UHGV-2029300_20	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-2029300_20	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-2029300_20	UniRef90	UniRef90_B5D0A6	Reverse transcriptase domain-containing protein	NA
UHGV-2029300_20	eggNOG-mapper	470145.BACCOP_03717	NA	NA
UHGV-2029300_20	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-2029300_20	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-2029300_20	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-2029300_20	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-2029300_21	PHROG	phrog_19239	NA	unknown function
UHGV-2029300_21	eggNOG-mapper	762968.HMPREF9441_02382	NA	NA
UHGV-2029300_21	Structural annotation	PF14301	NA	NA
UHGV-2029300_22	PHROG	phrog_17790	NA	unknown function
UHGV-2029300_22	UniRef90	UniRef90_A0A5C6KEU3	Helix-turn-helix domain-containing protein	NA
UHGV-2029300_22	eggNOG-mapper	762968.HMPREF9441_02383	NA	NA
UHGV-2029300_23	KOfam	K00560	thyA, TYMS; thymidylate synthase [EC:2.1.1.45]	NA
UHGV-2029300_23	PHROG	phrog_160	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-2029300_23	UniRef90	UniRef90_A0A6N3HML3	Thymidylate synthase	NA
UHGV-2029300_23	eggNOG-mapper	762968.HMPREF9441_02384	NA	NA
UHGV-2029300_23	Pfam	PF00303	Thymidylate synthase	Thymidylat_synt
UHGV-2029300_23	COG	COG0207	Thymidylate synthase	NA
UHGV-2029300_23	Structural annotation	PF00303, MF_00008, NF002497, COG0207	NA	NA
UHGV-2029300_24	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-2029300_24	PHROG	phrog_56	DNA methyltransferase	other
UHGV-2029300_24	UniRef90	UniRef90_A0A3A5R5I2	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-2029300_24	eggNOG-mapper	762968.HMPREF9441_02385	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-2029300_24	PADLOC	MTase_II_00054	Type II methyltransferase	RM
UHGV-2029300_24	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-2029300_24	COG	COG0338	DNA-adenine methylase	NA
UHGV-2029300_24	Structural annotation	PF02086, TIGR00571, COG0338	NA	NA
UHGV-2029300_25	PHROG	phrog_6911	NA	unknown function
UHGV-2029300_25	eggNOG-mapper	762968.HMPREF9441_02386	NA	NA
UHGV-2029300_25	Structural annotation	PF08873, COG5003	NA	NA
UHGV-2029300_26	PHROG	phrog_26	tail completion or Neck1 protein	connector
UHGV-2029300_26	UniRef90	UniRef90_UPI0018986EB8	phage virion morphogenesis protein	NA
UHGV-2029300_26	eggNOG-mapper	762968.HMPREF9441_02387	NA	NA
UHGV-2029300_26	Pfam	PF05069	Phage virion morphogenesis family	Phage_tail_S
UHGV-2029300_26	COG	COG5005	NA	NA
UHGV-2029300_26	Structural annotation	PF05069, TIGR01635, COG5005	NA	NA
UHGV-2029300_27	PHROG	phrog_846	NA	unknown function
UHGV-2029300_27	UniRef90	UniRef90_A0A3A5QVK2	NA	NA
UHGV-2029300_27	eggNOG-mapper	762968.HMPREF9441_02390	NA	NA
UHGV-2029300_27	Pfam	PF11363	NA	DUF3164
UHGV-2029300_27	Structural annotation	PF11363	NA	NA
UHGV-2029300_28	UniRef90	UniRef90_J9GIV1	NA	NA
UHGV-2029300_28	eggNOG-mapper	762968.HMPREF9441_02391	NA	NA
UHGV-2029300_29	PHROG	phrog_14123	NA	unknown function
UHGV-2029300_29	eggNOG-mapper	762968.HMPREF9441_02392	NA	NA
UHGV-2029300_31	PHROG	phrog_5781	NA	unknown function
UHGV-2029300_31	UniRef90	UniRef90_A0A6I2NPZ6	NA	NA
UHGV-2029300_31	eggNOG-mapper	457424.BFAG_03328	NA	NA
UHGV-2029300_31	Pfam	PF14359	NA	DUF4406
UHGV-2029300_31	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-2029300_32	UniRef90	UniRef90_A0A6L3KS01	RNA polymerase subunit sigma	NA
UHGV-2029300_32	eggNOG-mapper	483215.BACFIN_06268	NA	NA
UHGV-2029300_32	Structural annotation	PF00543, MF_00707, NF010078, COG3978	NA	NA
UHGV-2029300_33	PHROG	phrog_6891	ATPase	other
UHGV-2029300_33	UniRef90	UniRef90_A0A413UVU5	AAA family ATPase	NA
UHGV-2029300_33	eggNOG-mapper	762968.HMPREF9441_02396	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function	NA
UHGV-2029300_33	COG	COG1066	DNA repair protein RadA/Sms, contains AAA+ ATPase domain	NA
UHGV-2029300_33	Structural annotation	PF03796, MF_01498, TIGR00416, COG1066	NA	NA
UHGV-2029300_34	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-2029300_34	UniRef90	UniRef90_A0A6N2VTJ1	AAA domain-containing protein	NA
UHGV-2029300_34	eggNOG-mapper	762968.HMPREF9441_02397	AAA domain	NA
UHGV-2029300_34	Pfam	PF13401	AAA domain	AAA_22
UHGV-2029300_34	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-2029300_34	Structural annotation	PF13401, MF_01509, TIGR03015, COG2842	NA	NA
UHGV-2029300_35	PHROG	phrog_310	transposase	integration and excision
UHGV-2029300_35	eggNOG-mapper	762968.HMPREF9441_02398	NA	NA
UHGV-2029300_35	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-2029300_35	Structural annotation	PF02914, NF033594, COG1662	NA	NA
UHGV-2029300_36	PHROG	phrog_16858	NA	unknown function
UHGV-2029300_36	eggNOG-mapper	762968.HMPREF9441_02400	NA	NA
UHGV-2029300_36	Structural annotation	PF00659, PF08587	NA	NA
UHGV-2029300_37	UniRef90	UniRef90_A0A6G0G0K9	Transcriptional regulator	NA
UHGV-2029300_37	eggNOG-mapper	457424.BFAG_03336	Peptidase S24-like	NA
UHGV-2029300_37	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2029300_38	UniRef90	UniRef90_B3JED3	Putative type II restriction endonuclease, Alw26I/Eco31I/Esp3I family	NA
UHGV-2029300_38	eggNOG-mapper	470145.BACCOP_00224	Type II restriction endonuclease, Alw26I Eco31I Esp3I family	NA
UHGV-2029300_38	PADLOC	REase_II_00071	Type II restriction enzyme	RM
UHGV-2029300_38	Pfam	PF09665	Type II restriction endonuclease (RE_Alw26IDE)	RE_Alw26IDE
UHGV-2029300_39	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2029300_39	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2029300_39	UniRef90	UniRef90_B3JED2	Cytosine-specific methyltransferase	NA
UHGV-2029300_39	eggNOG-mapper	470145.BACCOP_00223	C-5 cytosine-specific DNA methylase	NA
UHGV-2029300_39	PADLOC	MTase_II_00023	Type II methyltransferase	RM
UHGV-2029300_39	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2029300_39	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2029300_39	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2029300_40	KOfam	K07317	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-2029300_40	PHROG	phrog_31645	NA	unknown function
UHGV-2029300_40	UniRef90	UniRef90_B3JED1	Type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family	NA
UHGV-2029300_40	eggNOG-mapper	470145.BACCOP_00222	Eco57I restriction-modification methylase	NA
UHGV-2029300_40	PADLOC	MTase_II_00023	Type II methyltransferase	RM
UHGV-2029300_40	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-2029300_40	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-2029300_41	UniRef90	UniRef90_UPI0015B547CB	NA	NA
UHGV-2029300_41	eggNOG-mapper	470145.BACCOP_00221	NA	NA
UHGV-2029300_41	Pfam	PF14053	NA	DUF4248
UHGV-2029300_41	Structural annotation	PF14053	NA	NA
UHGV-2029300_42	UniRef90	UniRef90_A0A412GZ79	DNA-binding protein	NA
UHGV-2029300_42	eggNOG-mapper	470145.BACCOP_00220	NA	NA
UHGV-2029300_42	Pfam	PF18291	HU domain fused to wHTH, Ig, or Glycine-rich motif	HU-HIG
UHGV-2029300_42	COG	COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	NA
UHGV-2029300_42	Structural annotation	PF18291, MF_00380, TIGR01201, COG0776	NA	NA
UHGV-2029300_43	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2029300_43	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2029300_43	UniRef90	UniRef90_B3JEC8	DNA helicase	NA
UHGV-2029300_43	eggNOG-mapper	470145.BACCOP_00219	Participates in initiation and elongation during chromosome replication	NA
UHGV-2029300_43	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2029300_43	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2029300_43	COG	COG0305	Replicative DNA helicase	NA
UHGV-2029300_43	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2029300_44	eggNOG-mapper	411901.BACCAC_02359	NA	NA